Wall clock time and date at job start Mon Mar 30 2020 06:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47086 * 2 1 4 4 C 1.47197 * 109.47243 * 120.00477 * 2 1 3 5 5 N 2.60800 * 109.47122 * 120.00323 * 2 1 3 6 6 C 1.53001 * 109.47183 * 240.00230 * 2 1 3 7 7 N 1.46497 * 109.47069 * 64.99752 * 6 2 1 8 8 C 1.38413 * 120.00093 * 180.02562 * 7 6 2 9 9 N 1.32746 * 119.43706 * 359.97438 * 8 7 6 10 10 C 1.31467 * 121.74179 * 180.02562 * 9 8 7 11 11 C 1.40789 * 120.39053 * 0.02562 * 10 9 8 12 12 C 1.41196 * 120.56889 * 180.02562 * 11 10 9 13 13 H 1.07998 * 119.99504 * 335.70924 * 12 11 10 14 14 C 1.39864 * 120.00116 * 155.70477 * 12 11 10 15 15 N 1.30895 * 120.00342 * 343.25300 * 14 12 11 16 16 Si 1.86802 * 119.99679 * 163.25349 * 14 12 11 17 17 H 1.48500 * 109.47048 * 90.00267 * 16 14 12 18 18 H 1.48497 * 109.47031 * 210.00001 * 16 14 12 19 19 H 1.48500 * 109.47150 * 330.00162 * 16 14 12 20 20 C 1.41291 * 118.86659 * 0.02562 * 11 10 9 21 21 C 1.36657 * 118.40221 * 359.97438 * 20 11 10 22 22 Cl 1.73603 * 120.26281 * 180.27401 * 21 20 11 23 23 H 1.08998 * 109.47327 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47438 * 299.99989 * 1 2 3 25 25 H 1.08997 * 109.47168 * 59.99909 * 1 2 3 26 26 H 1.09001 * 109.47192 * 305.00151 * 6 2 1 27 27 H 1.09000 * 109.47412 * 185.00253 * 6 2 1 28 28 H 0.97007 * 120.00307 * 0.02562 * 7 6 2 29 29 H 1.07997 * 119.80262 * 179.97438 * 10 9 8 30 30 H 0.96999 * 120.00069 * 179.97438 * 15 14 12 31 31 H 1.08005 * 120.79555 * 180.02562 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6940 1.2018 5 7 2.3994 -1.2295 2.1294 6 6 2.0400 -0.7212 -1.2493 7 7 1.6524 0.0354 -2.4424 8 6 2.0048 -0.4256 -3.6990 9 7 2.6944 -1.5544 -3.8101 10 6 3.0532 -2.0333 -4.9807 11 6 2.7112 -1.3519 -6.1642 12 6 3.0941 -1.8631 -7.4234 13 1 3.9466 -2.5215 -7.5023 14 6 2.3694 -1.5170 -8.5685 15 7 1.1706 -1.0041 -8.4543 16 14 3.1125 -1.7868 -10.2610 17 1 2.7557 -3.1436 -10.7477 18 1 2.5823 -0.7680 -11.2024 19 1 4.5900 -1.6631 -10.1784 20 6 1.9782 -0.1476 -6.0705 21 6 1.6302 0.3065 -4.8294 22 17 0.7234 1.7770 -4.6585 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.6054 -1.7198 -1.2953 27 1 3.1263 -0.7995 -1.2056 28 1 1.1488 0.8595 -2.3517 29 1 3.6144 -2.9545 -5.0346 30 1 0.6681 -0.7638 -9.2484 31 1 1.6989 0.4003 -6.9583 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390212480.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:42 Heat of formation + Delta-G solvation = 25.227328 kcal Electronic energy + Delta-G solvation = -16802.173885 eV Core-core repulsion = 13915.211349 eV Total energy + Delta-G solvation = -2886.962535 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.54626 -38.70266 -37.23560 -36.86617 -35.63470 -33.63438 -32.32022 -30.75404 -27.73107 -26.41799 -24.44530 -23.25485 -22.45433 -19.27323 -19.12739 -17.71612 -17.44806 -16.66673 -16.22762 -15.95133 -15.57580 -15.07193 -14.76978 -14.43686 -14.16492 -13.96347 -13.74669 -13.57939 -13.40940 -13.15550 -12.83640 -12.66244 -12.61637 -12.41099 -12.20788 -11.99300 -11.87746 -11.55189 -11.21250 -10.49822 -10.09194 -9.93211 -8.68756 -8.41625 -6.16208 0.69947 1.03595 1.45595 1.47218 1.54351 1.60254 1.64651 1.75013 2.25790 2.50669 2.77653 3.15208 3.68459 3.80450 4.00285 4.21289 4.28679 4.55921 4.80558 4.82107 4.88220 4.96247 5.08892 5.14538 5.27476 5.34268 5.35552 5.83206 5.85249 6.34372 6.51244 6.60274 6.80260 6.86231 6.93945 7.76736 8.37021 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.032141 B = 0.004673 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.964705 B = 5990.270178 C = 6686.770210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.006 3.994 3 H 0.149 0.851 4 C 0.244 3.756 5 N -0.484 5.484 6 C 0.157 3.843 7 N -0.724 5.724 8 C 0.297 3.703 9 N -0.511 5.511 10 C 0.006 3.994 11 C 0.011 3.989 12 C -0.484 4.484 13 H 0.084 0.916 14 C 0.036 3.964 15 N -0.829 5.829 16 Si 0.979 3.021 17 H -0.265 1.265 18 H -0.270 1.270 19 H -0.259 1.259 20 C -0.103 4.103 21 C -0.111 4.111 22 Cl -0.081 7.081 23 H 0.058 0.942 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.410 0.590 29 H 0.144 0.856 30 H 0.288 0.712 31 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.561 5.671 6.669 9.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.016 4.016 3 H 0.166 0.834 4 C -0.073 4.073 5 N -0.161 5.161 6 C 0.031 3.969 7 N -0.367 5.367 8 C 0.061 3.939 9 N -0.228 5.228 10 C -0.152 4.152 11 C 0.006 3.994 12 C -0.515 4.515 13 H 0.102 0.898 14 C -0.178 4.178 15 N -0.456 5.456 16 Si 0.801 3.199 17 H -0.190 1.190 18 H -0.195 1.195 19 H -0.183 1.183 20 C -0.130 4.130 21 C -0.143 4.143 22 Cl -0.053 7.053 23 H 0.077 0.923 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.249 0.751 29 H 0.161 0.839 30 H 0.099 0.901 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.967 4.479 8.818 10.084 hybrid contribution -0.385 0.715 -1.980 2.140 sum -2.352 5.194 6.838 8.904 Atomic orbital electron populations 1.21851 0.90234 1.03623 1.04476 1.19118 0.98423 1.00163 0.83905 0.83367 1.29204 0.91796 0.92396 0.93947 1.81238 1.10575 1.10725 1.13528 1.20827 0.99143 0.94579 0.82400 1.43593 1.64149 1.28456 1.00463 1.17625 0.98822 0.92132 0.85307 1.66826 1.15065 1.12033 1.28841 1.22531 1.05718 1.00250 0.86684 1.18575 0.94209 0.91794 0.94854 1.19583 1.13113 1.27322 0.91448 0.89798 1.26648 0.93829 0.92394 1.04938 1.69833 1.09626 1.32676 1.33472 0.85230 0.79641 0.78898 0.76159 1.18980 1.19483 1.18256 1.21260 1.00602 0.96076 0.95050 1.20951 1.06406 0.92203 0.94783 1.98241 1.73930 1.35307 1.97796 0.92250 0.89728 0.89739 0.93050 0.92994 0.75134 0.83882 0.90110 0.85736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.02 71.98 0.65 -1.33 16 2 C 0.01 0.09 2.80 -12.60 -0.04 0.06 16 3 H 0.15 1.63 8.14 -2.39 -0.02 1.61 16 4 C 0.24 5.35 14.64 89.44 1.31 6.66 16 5 N -0.48 -13.55 18.54 20.01 0.37 -13.17 16 6 C 0.16 3.92 5.01 86.38 0.43 4.36 16 7 N -0.72 -21.39 5.37 -344.75 -1.85 -23.24 16 8 C 0.30 11.92 7.48 133.32 1.00 12.92 16 9 N -0.51 -22.46 9.52 -191.08 -1.82 -24.28 16 10 C 0.01 0.28 10.97 85.37 0.94 1.22 16 11 C 0.01 0.57 5.59 -21.18 -0.12 0.45 16 12 C -0.48 -24.21 9.07 23.39 0.21 -24.00 16 13 H 0.08 4.00 7.90 -2.91 -0.02 3.97 16 14 C 0.04 1.72 5.18 85.23 0.44 2.16 16 15 N -0.83 -40.91 10.91 21.81 0.24 -40.67 16 16 Si 0.98 36.18 29.59 68.60 2.03 38.21 16 17 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 18 H -0.27 -9.62 7.11 99.48 0.71 -8.91 16 19 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 20 C -0.10 -4.99 8.52 22.65 0.19 -4.80 16 21 C -0.11 -4.69 6.32 22.28 0.14 -4.55 16 22 Cl -0.08 -2.75 27.56 -2.72 -0.07 -2.82 16 23 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.08 1.13 7.18 -2.39 -0.02 1.11 16 26 H 0.05 1.44 8.14 -2.39 -0.02 1.43 16 27 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.41 10.14 6.26 -92.70 -0.58 9.56 16 29 H 0.14 6.20 8.06 -2.91 -0.02 6.18 16 30 H 0.29 12.95 8.30 -92.71 -0.77 12.18 16 31 H 0.12 6.38 6.20 -2.91 -0.02 6.36 16 Total: -1.00 -58.30 292.01 4.65 -53.66 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 0.59 Total: 19.17 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 5.16 Total: -6.86 kcal Atomic # 7 Polarization: -98.30 SS G_CDS: -3.06 Total: -101.36 kcal Atomic # 14 Polarization: 36.18 SS G_CDS: 2.03 Total: 38.21 kcal Atomic # 17 Polarization: -2.75 SS G_CDS: -0.07 Total: -2.82 kcal Total: -58.30 4.65 -53.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390212480.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.884 kcal (2) G-P(sol) polarization free energy of solvation -58.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds