Wall clock time and date at job start Mon Mar 30 2020 06:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35853 * 116.99976 * 2 1 4 4 C 1.37403 * 119.84110 * 359.72305 * 3 2 1 5 5 C 1.38906 * 120.69541 * 179.76284 * 4 3 2 6 6 C 1.38213 * 120.15139 * 0.49175 * 5 4 3 7 7 O 1.36052 * 119.86496 * 179.79266 * 6 5 4 8 8 C 1.42903 * 116.99462 * 359.97438 * 7 6 5 9 9 C 1.39543 * 120.27551 * 359.76679 * 6 5 4 10 10 S 1.76203 * 131.22250 * 179.97438 * 9 6 5 11 11 C 1.75848 * 90.32844 * 180.02562 * 10 9 6 12 12 C 1.40080 * 124.94487 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99868 * 0.02562 * 12 11 10 14 14 C 1.40306 * 120.00001 * 179.97438 * 12 11 10 15 15 N 1.30623 * 120.00193 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99907 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47131 * 90.00073 * 16 14 12 18 18 H 1.48499 * 109.47204 * 210.00529 * 16 14 12 19 19 H 1.48500 * 109.47060 * 330.00373 * 16 14 12 20 20 N 1.30525 * 110.11234 * 359.97438 * 11 10 9 21 21 C 1.32761 * 117.99658 * 0.02562 * 20 11 10 22 22 H 1.09001 * 109.47103 * 60.00562 * 1 2 3 23 23 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47187 * 300.00122 * 1 2 3 25 25 H 1.08002 * 119.65531 * 359.97438 * 4 3 2 26 26 H 1.08003 * 119.91981 * 180.23850 * 5 4 3 27 27 H 1.09004 * 109.46769 * 180.02562 * 8 7 6 28 28 H 1.09002 * 109.47605 * 300.00043 * 8 7 6 29 29 H 1.08997 * 109.47076 * 60.00570 * 8 7 6 30 30 H 0.97005 * 119.99752 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0458 1.2105 0.0000 4 6 1.2943 2.3607 -0.0058 5 6 1.9063 3.6077 -0.0009 6 6 3.2851 3.7043 -0.0005 7 8 3.8785 4.9286 0.0000 8 6 3.0155 6.0676 -0.0005 9 6 4.0711 2.5513 0.0001 10 16 5.8202 2.3384 0.0001 11 6 5.6178 0.5916 0.0002 12 6 6.6660 -0.3377 -0.0003 13 1 7.6905 0.0041 -0.0003 14 6 6.3849 -1.7123 0.0003 15 7 5.1458 -2.1256 0.0008 16 14 7.7828 -2.9514 0.0004 17 1 8.1536 -3.2793 1.4005 18 1 7.3488 -4.1874 -0.6991 19 1 8.9574 -2.3727 -0.7001 20 7 4.3486 0.2868 0.0007 21 6 3.4689 1.2812 0.0005 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.2163 2.2947 -0.0107 26 1 1.3034 4.5037 -0.0016 27 1 3.6153 6.9778 -0.0005 28 1 2.3871 6.0470 -0.8910 29 1 2.3860 6.0469 0.8890 30 1 4.9515 -3.0760 0.0008 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393823435.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:16 Heat of formation + Delta-G solvation = -27.249351 kcal Electronic energy + Delta-G solvation = -17442.189476 eV Core-core repulsion = 14522.702337 eV Total energy + Delta-G solvation = -2919.487140 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.58947 -38.21475 -37.07931 -34.70891 -33.28660 -29.52944 -28.89322 -27.35849 -26.32719 -25.88299 -22.84647 -21.10640 -20.34249 -17.97923 -17.46623 -16.67971 -16.00928 -15.39754 -15.27985 -14.87779 -14.60900 -14.41973 -14.04089 -13.45740 -12.96932 -12.61826 -12.20910 -12.06006 -11.63595 -11.50621 -11.18170 -11.13959 -11.07559 -10.94347 -10.52803 -10.31546 -9.93405 -9.74884 -9.37696 -8.25439 -7.76887 -7.64235 -6.83098 -6.41673 -4.86659 1.86967 2.27421 2.82788 2.89330 2.94916 2.99790 3.31882 3.71660 3.72347 3.86386 4.25918 4.57728 5.20648 5.36302 5.42977 5.46535 5.51687 5.63133 5.64297 5.73287 5.88781 5.97456 6.32381 6.52156 6.59488 6.75662 7.04134 7.10640 7.35251 7.73214 7.96821 8.01988 8.27904 8.39140 9.73499 9.90431 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.021026 B = 0.007332 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.390675 B = 3818.213579 C = 5129.156872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.297 6.297 3 C 0.077 3.923 4 C -0.157 4.157 5 C -0.257 4.257 6 C 0.171 3.829 7 O -0.320 6.320 8 C 0.033 3.967 9 C -0.249 4.249 10 S -0.096 6.096 11 C 0.248 3.752 12 C -0.362 4.362 13 H 0.102 0.898 14 C 0.062 3.938 15 N -0.680 5.680 16 Si 0.926 3.074 17 H -0.263 1.263 18 H -0.271 1.271 19 H -0.256 1.256 20 N -0.529 5.529 21 C 0.201 3.799 22 H 0.044 0.956 23 H 0.088 0.912 24 H 0.044 0.956 25 H 0.118 0.882 26 H 0.117 0.883 27 H 0.089 0.911 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.581 4.601 -0.005 6.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.211 6.211 3 C 0.029 3.971 4 C -0.179 4.179 5 C -0.280 4.280 6 C 0.122 3.878 7 O -0.234 6.234 8 C -0.063 4.063 9 C -0.370 4.370 10 S 0.159 5.841 11 C -0.002 4.002 12 C -0.403 4.403 13 H 0.120 0.880 14 C -0.171 4.171 15 N -0.300 5.300 16 Si 0.748 3.252 17 H -0.188 1.188 18 H -0.195 1.195 19 H -0.179 1.179 20 N -0.248 5.248 21 C 0.066 3.934 22 H 0.062 0.938 23 H 0.107 0.893 24 H 0.062 0.938 25 H 0.136 0.864 26 H 0.135 0.865 27 H 0.108 0.892 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.578 4.379 -0.009 5.654 hybrid contribution -1.037 -0.206 0.004 1.057 sum -4.614 4.172 -0.005 6.221 Atomic orbital electron populations 1.22871 0.80913 1.02618 1.00114 1.86211 1.18771 1.26712 1.89357 1.18337 0.88815 0.84018 1.05932 1.20267 0.98339 0.91379 1.07925 1.20164 0.91818 0.97296 1.18696 1.17782 0.90218 0.82337 0.97474 1.86103 1.35551 1.12499 1.89269 1.22879 0.95196 0.87332 1.00844 1.22272 0.95554 0.94435 1.24761 1.84375 1.02772 1.13231 1.83695 1.23774 0.92757 0.89171 0.94535 1.19314 0.93185 0.89744 1.38048 0.88025 1.26225 0.97316 0.99352 0.94194 1.70001 1.19666 1.17557 1.22767 0.86003 0.80488 0.78942 0.79776 1.18790 1.19524 1.17929 1.66918 0.98751 1.27572 1.31560 1.18578 0.91775 0.86622 0.96423 0.93764 0.89313 0.93767 0.86395 0.86539 0.89236 0.93239 0.93231 0.90101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.80 101.05 0.99 1.48 16 2 O -0.30 -6.76 10.51 -19.28 -0.20 -6.96 16 3 C 0.08 1.83 6.77 -38.25 -0.26 1.57 16 4 C -0.16 -3.14 8.99 -39.64 -0.36 -3.50 16 5 C -0.26 -5.06 9.04 -39.34 -0.36 -5.41 16 6 C 0.17 3.82 6.70 -39.10 -0.26 3.56 16 7 O -0.32 -6.44 10.50 -19.91 -0.21 -6.65 16 8 C 0.03 0.46 9.81 101.05 0.99 1.45 16 9 C -0.25 -6.35 6.48 -38.22 -0.25 -6.60 16 10 S -0.10 -2.41 23.33 -107.50 -2.51 -4.91 16 11 C 0.25 6.79 7.03 -17.42 -0.12 6.67 16 12 C -0.36 -9.14 9.39 -38.11 -0.36 -9.49 16 13 H 0.10 2.31 7.85 -52.48 -0.41 1.90 16 14 C 0.06 1.46 5.50 -17.29 -0.10 1.37 16 15 N -0.68 -17.45 11.84 55.57 0.66 -16.80 16 16 Si 0.93 17.02 29.56 -169.99 -5.03 12.00 16 17 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 18 H -0.27 -4.87 7.11 56.52 0.40 -4.46 16 19 H -0.26 -4.57 7.11 56.52 0.40 -4.16 16 20 N -0.53 -15.25 8.58 -10.18 -0.09 -15.33 16 21 C 0.20 5.43 6.89 -84.95 -0.59 4.85 16 22 H 0.04 0.62 7.63 -51.93 -0.40 0.22 16 23 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 24 H 0.04 0.62 7.65 -51.93 -0.40 0.22 16 25 H 0.12 1.93 6.19 -52.49 -0.33 1.60 16 26 H 0.12 1.87 6.25 -52.48 -0.33 1.55 16 27 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.05 0.62 7.65 -51.93 -0.40 0.23 16 29 H 0.05 0.63 7.65 -51.93 -0.40 0.23 16 30 H 0.29 6.55 8.29 -40.82 -0.34 6.22 16 LS Contribution 277.49 15.07 4.18 4.18 Total: -1.00 -31.55 277.49 -6.48 -38.04 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -2.63 Total: 0.51 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -0.66 Total: -4.06 kcal Atomic # 7 Polarization: -32.70 SS G_CDS: 0.57 Total: -32.13 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.41 Total: -13.61 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -5.03 Total: 12.00 kcal Atomic # 16 Polarization: -2.41 SS G_CDS: -2.51 Total: -4.91 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.55 -6.48 -38.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393823435.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.787 kcal (2) G-P(sol) polarization free energy of solvation -31.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds