Wall clock time and date at job start Mon Mar 30 2020 06:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35853 * 116.99976 * 2 1 4 4 C 1.37403 * 119.84110 * 359.72305 * 3 2 1 5 5 C 1.38906 * 120.69541 * 179.76284 * 4 3 2 6 6 C 1.38213 * 120.15139 * 0.49175 * 5 4 3 7 7 O 1.36052 * 119.86496 * 179.79266 * 6 5 4 8 8 C 1.42903 * 116.99462 * 359.97438 * 7 6 5 9 9 C 1.39543 * 120.27551 * 359.76679 * 6 5 4 10 10 S 1.76203 * 131.22250 * 179.97438 * 9 6 5 11 11 C 1.75848 * 90.32844 * 180.02562 * 10 9 6 12 12 C 1.40080 * 124.94487 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99868 * 0.02562 * 12 11 10 14 14 C 1.40306 * 120.00001 * 179.97438 * 12 11 10 15 15 N 1.30623 * 120.00193 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99907 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47131 * 90.00073 * 16 14 12 18 18 H 1.48499 * 109.47204 * 210.00529 * 16 14 12 19 19 H 1.48500 * 109.47060 * 330.00373 * 16 14 12 20 20 N 1.30525 * 110.11234 * 359.97438 * 11 10 9 21 21 C 1.32761 * 117.99658 * 0.02562 * 20 11 10 22 22 H 1.09001 * 109.47103 * 60.00562 * 1 2 3 23 23 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47187 * 300.00122 * 1 2 3 25 25 H 1.08002 * 119.65531 * 359.97438 * 4 3 2 26 26 H 1.08003 * 119.91981 * 180.23850 * 5 4 3 27 27 H 1.09004 * 109.46769 * 180.02562 * 8 7 6 28 28 H 1.09002 * 109.47605 * 300.00043 * 8 7 6 29 29 H 1.08997 * 109.47076 * 60.00570 * 8 7 6 30 30 H 0.97005 * 119.99752 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0458 1.2105 0.0000 4 6 1.2943 2.3607 -0.0058 5 6 1.9063 3.6077 -0.0009 6 6 3.2851 3.7043 -0.0005 7 8 3.8785 4.9286 0.0000 8 6 3.0155 6.0676 -0.0005 9 6 4.0711 2.5513 0.0001 10 16 5.8202 2.3384 0.0001 11 6 5.6178 0.5916 0.0002 12 6 6.6660 -0.3377 -0.0003 13 1 7.6905 0.0041 -0.0003 14 6 6.3849 -1.7123 0.0003 15 7 5.1458 -2.1256 0.0008 16 14 7.7828 -2.9514 0.0004 17 1 8.1536 -3.2793 1.4005 18 1 7.3488 -4.1874 -0.6991 19 1 8.9574 -2.3727 -0.7001 20 7 4.3486 0.2868 0.0007 21 6 3.4689 1.2812 0.0005 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.2163 2.2947 -0.0107 26 1 1.3034 4.5037 -0.0016 27 1 3.6153 6.9778 -0.0005 28 1 2.3871 6.0470 -0.8910 29 1 2.3860 6.0469 0.8890 30 1 4.9515 -3.0760 0.0008 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393823435.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:15 Heat of formation + Delta-G solvation = -49.348778 kcal Electronic energy + Delta-G solvation = -17443.147779 eV Core-core repulsion = 14522.702337 eV Total energy + Delta-G solvation = -2920.445443 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.24395 -39.74338 -38.83872 -36.41563 -35.05063 -31.28757 -30.47812 -28.88902 -27.65776 -27.47432 -24.63383 -22.78805 -22.08698 -19.66969 -19.20224 -18.29220 -17.66142 -16.99146 -16.72278 -16.35822 -16.28021 -16.15753 -15.46675 -15.05749 -14.72480 -14.18380 -13.71195 -13.44359 -13.17479 -13.12112 -12.83344 -12.59727 -12.54352 -12.34918 -12.06313 -11.93000 -11.60518 -11.33523 -10.98517 -10.09244 -9.69297 -9.51029 -8.62512 -8.15788 -6.77590 0.06885 0.55459 1.02169 1.36752 1.42810 1.43822 1.61044 1.99069 2.16490 2.45015 2.78455 2.81399 3.32699 3.76744 4.04727 4.29103 4.40339 4.45723 4.47378 4.47801 4.64169 4.72406 4.75221 4.78602 4.86519 5.08624 5.39175 5.42324 5.65044 5.90340 6.14832 6.42940 6.52202 6.79340 7.86507 8.15966 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.021026 B = 0.007332 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.390675 B = 3818.213579 C = 5129.156872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.336 6.336 3 C 0.054 3.946 4 C -0.141 4.141 5 C -0.236 4.236 6 C 0.159 3.841 7 O -0.342 6.342 8 C 0.021 3.979 9 C -0.273 4.273 10 S -0.103 6.103 11 C 0.217 3.783 12 C -0.387 4.387 13 H 0.117 0.883 14 C 0.019 3.981 15 N -0.729 5.729 16 Si 1.011 2.989 17 H -0.255 1.255 18 H -0.263 1.263 19 H -0.245 1.245 20 N -0.568 5.568 21 C 0.153 3.847 22 H 0.064 0.936 23 H 0.108 0.892 24 H 0.064 0.936 25 H 0.163 0.837 26 H 0.164 0.836 27 H 0.117 0.883 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.911 5.672 -0.020 8.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.250 6.250 3 C 0.006 3.994 4 C -0.163 4.163 5 C -0.258 4.258 6 C 0.109 3.891 7 O -0.257 6.257 8 C -0.074 4.074 9 C -0.394 4.394 10 S 0.152 5.848 11 C -0.034 4.034 12 C -0.428 4.428 13 H 0.135 0.865 14 C -0.209 4.209 15 N -0.350 5.350 16 Si 0.828 3.172 17 H -0.180 1.180 18 H -0.187 1.187 19 H -0.167 1.167 20 N -0.289 5.289 21 C 0.021 3.979 22 H 0.082 0.918 23 H 0.126 0.874 24 H 0.082 0.918 25 H 0.181 0.819 26 H 0.181 0.819 27 H 0.135 0.865 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.963 5.505 -0.024 7.412 hybrid contribution -0.850 -0.325 0.011 0.910 sum -5.814 5.180 -0.013 7.786 Atomic orbital electron populations 1.23250 0.77473 1.04728 1.01901 1.86143 1.22446 1.26904 1.89553 1.18617 0.88166 0.85653 1.06936 1.20779 1.00331 0.90131 1.05057 1.20743 0.91048 0.98923 1.15092 1.17969 0.90998 0.82625 0.97520 1.86073 1.37680 1.12929 1.89010 1.23320 0.95773 0.85894 1.02373 1.22617 0.95387 0.95652 1.25760 1.84037 1.03963 1.12570 1.84229 1.24264 0.93253 0.90276 0.95606 1.19840 0.93532 0.90781 1.38656 0.86535 1.27385 1.00130 1.00778 0.92578 1.70109 1.22415 1.18494 1.23967 0.84776 0.76575 0.75711 0.80134 1.17961 1.18718 1.16748 1.66867 0.99560 1.29190 1.33251 1.19152 0.93452 0.86999 0.98306 0.91774 0.87371 0.91787 0.81948 0.81868 0.86499 0.91558 0.91551 0.89390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 9.80 113.37 1.11 1.73 16 2 O -0.34 -15.39 10.51 -91.90 -0.97 -16.35 16 3 C 0.05 2.59 6.77 23.13 0.16 2.75 16 4 C -0.14 -5.25 8.99 22.23 0.20 -5.06 16 5 C -0.24 -8.48 9.04 22.42 0.20 -8.28 16 6 C 0.16 6.92 6.70 22.58 0.15 7.07 16 7 O -0.34 -13.20 10.50 -94.14 -0.99 -14.19 16 8 C 0.02 0.49 9.81 113.37 1.11 1.60 16 9 C -0.27 -14.31 6.48 23.15 0.15 -14.16 16 10 S -0.10 -5.38 23.33 -56.49 -1.32 -6.70 16 11 C 0.22 12.55 7.03 85.33 0.60 13.15 16 12 C -0.39 -20.39 9.39 23.22 0.22 -20.18 16 13 H 0.12 5.49 7.85 -2.91 -0.02 5.47 16 14 C 0.02 0.93 5.50 85.38 0.47 1.40 16 15 N -0.73 -39.10 11.84 21.89 0.26 -38.84 16 16 Si 1.01 35.14 29.56 68.60 2.03 37.17 16 17 H -0.26 -8.49 7.11 99.48 0.71 -7.78 16 18 H -0.26 -8.71 7.11 99.48 0.71 -8.00 16 19 H -0.24 -7.96 7.11 99.48 0.71 -7.26 16 20 N -0.57 -34.59 8.58 -186.14 -1.60 -36.19 16 21 C 0.15 8.59 6.89 40.63 0.28 8.87 16 22 H 0.06 1.60 7.63 -2.39 -0.02 1.58 16 23 H 0.11 2.67 8.14 -2.38 -0.02 2.65 16 24 H 0.06 1.60 7.65 -2.39 -0.02 1.58 16 25 H 0.16 4.50 6.19 -2.91 -0.02 4.48 16 26 H 0.16 4.29 6.25 -2.91 -0.02 4.27 16 27 H 0.12 2.15 8.14 -2.38 -0.02 2.13 16 28 H 0.07 1.38 7.65 -2.39 -0.02 1.36 16 29 H 0.07 1.38 7.65 -2.39 -0.02 1.36 16 30 H 0.29 14.00 8.29 -92.70 -0.77 13.23 16 Total: -1.00 -74.40 277.49 3.25 -71.14 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 1.18 Total: 15.07 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: 4.65 Total: -11.11 kcal Atomic # 7 Polarization: -73.69 SS G_CDS: -1.34 Total: -75.03 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -1.95 Total: -30.54 kcal Atomic # 14 Polarization: 35.14 SS G_CDS: 2.03 Total: 37.17 kcal Atomic # 16 Polarization: -5.38 SS G_CDS: -1.32 Total: -6.70 kcal Total: -74.40 3.25 -71.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393823435.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.796 kcal (2) G-P(sol) polarization free energy of solvation -74.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds