Wall clock time and date at job start Mon Mar 30 2020 06:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.32778 * 123.45993 * 2 1 4 4 S 1.75501 * 110.57805 * 179.97438 * 3 2 1 5 5 C 1.70448 * 92.44604 * 359.82020 * 4 3 2 6 6 C 1.36011 * 110.81785 * 0.31824 * 5 4 3 7 7 C 1.47184 * 123.46358 * 179.89187 * 6 5 4 8 8 O 1.21633 * 120.00079 * 186.41618 * 7 6 5 9 9 N 1.34776 * 119.99983 * 6.41407 * 7 6 5 10 10 C 1.47027 * 125.64697 * 355.31782 * 9 7 6 11 11 C 1.54322 * 107.40118 * 178.82403 * 10 9 7 12 12 C 1.55399 * 102.82800 * 337.97616 * 11 10 9 13 13 H 1.09005 * 110.89404 * 277.26674 * 12 11 10 14 14 C 1.50700 * 111.07050 * 153.48778 * 12 11 10 15 15 H 1.07998 * 120.00054 * 6.20560 * 14 12 11 16 16 C 1.37877 * 120.00144 * 186.20819 * 14 12 11 17 17 N 1.31519 * 119.99957 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 120.00364 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.46723 * 60.00245 * 18 16 14 20 20 H 1.48501 * 109.47492 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47095 * 300.00242 * 18 16 14 22 22 C 1.47419 * 125.65033 * 175.26980 * 9 7 6 23 23 H 1.08992 * 109.47429 * 270.02031 * 1 2 3 24 24 H 1.09003 * 109.47248 * 30.02326 * 1 2 3 25 25 H 1.09007 * 109.47186 * 150.02045 * 1 2 3 26 26 H 1.08003 * 124.70474 * 0.02562 * 3 2 1 27 27 H 1.07997 * 124.59320 * 180.20718 * 5 4 3 28 28 H 1.08996 * 109.88331 * 298.31987 * 10 9 7 29 29 H 1.08997 * 109.88334 * 59.32868 * 10 9 7 30 30 H 1.08996 * 110.72143 * 96.24549 * 11 10 9 31 31 H 1.08999 * 110.71919 * 219.52482 * 11 10 9 32 32 H 0.97001 * 119.99676 * 180.02562 * 17 16 14 33 33 H 1.09005 * 110.37085 * 323.00889 * 22 9 7 34 34 H 1.09003 * 110.37025 * 85.32922 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2390 1.1077 0.0000 4 16 3.9498 0.7165 0.0007 5 6 3.6411 -0.9598 0.0064 6 6 2.3033 -1.2049 0.0006 7 6 1.7263 -2.5590 0.0011 8 8 0.5254 -2.7084 -0.1220 9 7 2.5285 -3.6333 0.1380 10 6 3.9973 -3.6039 0.1975 11 6 4.4806 -5.0571 0.3875 12 6 3.2319 -5.7602 0.9885 13 1 3.1742 -5.5970 2.0647 14 6 3.2325 -7.2327 0.6677 15 1 4.0849 -7.6780 0.1763 16 6 2.1448 -8.0114 1.0017 17 7 1.1065 -7.4691 1.5997 18 14 2.1451 -9.8365 0.6035 19 1 3.2829 -10.4939 1.2954 20 1 0.8694 -10.4434 1.0612 21 1 2.2831 -10.0231 -0.8633 22 6 2.0786 -5.0324 0.2539 23 1 -0.3634 0.0004 1.0276 24 1 -0.3634 0.8898 -0.5142 25 1 -0.3634 -0.8902 -0.5135 26 1 1.8373 2.1103 0.0004 27 1 4.4044 -1.7238 0.0119 28 1 4.3978 -3.1985 -0.7316 29 1 4.3220 -2.9921 1.0391 30 1 4.7497 -5.5024 -0.5703 31 1 5.3199 -5.0966 1.0818 32 1 0.3415 -8.0171 1.8349 33 1 1.1608 -5.0886 0.8392 34 1 1.9259 -5.4650 -0.7349 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397753956.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:57 Heat of formation + Delta-G solvation = 2.233203 kcal Electronic energy + Delta-G solvation = -17812.831427 eV Core-core repulsion = 15030.455841 eV Total energy + Delta-G solvation = -2782.375586 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.77520 -37.40007 -36.33858 -33.18872 -31.46604 -30.14652 -28.29618 -27.40276 -25.21048 -24.19178 -21.98878 -20.35480 -19.52829 -18.41437 -17.22862 -16.57993 -16.14114 -15.19938 -14.80127 -14.46230 -14.14846 -13.79555 -13.24448 -13.13070 -12.68234 -12.56205 -12.35651 -12.04030 -11.85383 -11.79587 -11.61198 -11.25529 -10.95263 -10.84067 -10.60175 -10.54075 -9.93257 -9.35226 -9.25636 -9.04579 -8.82725 -8.54451 -8.31030 -7.84919 -6.11813 -4.17805 0.89133 1.61776 1.96738 2.15972 3.28020 3.34261 3.35254 3.64667 3.76972 4.36785 4.78354 5.00955 5.21018 5.26142 5.34328 5.43064 5.52762 5.60973 5.76393 5.81660 5.89311 6.06560 6.21154 6.31725 6.39850 6.66796 6.68779 6.82367 6.95241 7.04073 7.44524 7.64396 7.87294 8.22854 8.25159 8.75095 8.85215 9.48376 10.97461 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.036870 B = 0.004848 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.240610 B = 5773.658985 C = 6414.466994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.049 4.049 3 C -0.248 4.248 4 S 0.152 5.848 5 C -0.228 4.228 6 C -0.142 4.142 7 C 0.579 3.421 8 O -0.542 6.542 9 N -0.606 5.606 10 C 0.092 3.908 11 C -0.131 4.131 12 C 0.047 3.953 13 H 0.038 0.962 14 C -0.521 4.521 15 H 0.061 0.939 16 C 0.065 3.935 17 N -0.885 5.885 18 Si 0.896 3.104 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.121 3.879 23 H 0.070 0.930 24 H 0.059 0.941 25 H 0.097 0.903 26 H 0.165 0.835 27 H 0.191 0.809 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.265 0.735 33 H 0.085 0.915 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.740 15.270 -2.728 16.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.060 4.060 3 C -0.383 4.383 4 S 0.418 5.582 5 C -0.365 4.365 6 C -0.160 4.160 7 C 0.366 3.634 8 O -0.422 6.422 9 N -0.338 5.338 10 C -0.031 4.031 11 C -0.169 4.169 12 C 0.028 3.972 13 H 0.056 0.944 14 C -0.559 4.559 15 H 0.080 0.920 16 C -0.138 4.138 17 N -0.522 5.522 18 Si 0.724 3.276 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.201 1.201 22 C 0.000 4.000 23 H 0.088 0.912 24 H 0.078 0.922 25 H 0.115 0.885 26 H 0.182 0.818 27 H 0.207 0.793 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.204 16.075 -2.728 17.445 hybrid contribution -1.210 -1.804 -0.164 2.178 sum 4.994 14.270 -2.893 15.393 Atomic orbital electron populations 1.20688 0.88798 1.03807 1.02880 1.19916 0.97557 0.89946 0.98619 1.25210 0.96243 1.02331 1.14494 1.82835 1.06147 0.98105 1.71095 1.26695 1.00926 1.02409 1.06479 1.20363 0.92129 0.94769 1.08692 1.17223 0.85804 0.82678 0.77671 1.90700 1.14292 1.85887 1.51370 1.48787 1.06634 1.08539 1.69840 1.22380 0.81558 0.99794 0.99355 1.22829 1.00112 0.92305 1.01644 1.19886 0.87734 0.94159 0.95428 0.94361 1.20920 1.02826 0.91969 1.40173 0.92047 1.25043 0.95472 0.98806 0.94520 1.69931 1.06194 1.36187 1.39908 0.86591 0.77334 0.84879 0.78836 1.20162 1.21211 1.20148 1.22757 1.01360 0.75361 1.00489 0.91154 0.92168 0.88467 0.81786 0.79261 0.92309 0.91971 0.91273 0.91524 0.92529 0.89637 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.45 9.63 36.00 0.35 -1.10 16 2 C -0.05 -0.73 6.01 -104.06 -0.63 -1.35 16 3 C -0.25 -2.95 10.91 28.86 0.31 -2.64 16 4 S 0.15 1.65 23.02 -107.50 -2.48 -0.83 16 5 C -0.23 -3.12 9.41 29.93 0.28 -2.84 16 6 C -0.14 -2.38 5.97 -104.63 -0.62 -3.00 16 7 C 0.58 11.98 7.81 -12.63 -0.10 11.89 16 8 O -0.54 -12.76 14.49 5.25 0.08 -12.69 16 9 N -0.61 -12.52 3.33 -171.88 -0.57 -13.10 16 10 C 0.09 1.54 4.93 -3.06 -0.02 1.52 16 11 C -0.13 -2.42 6.42 -24.77 -0.16 -2.58 16 12 C 0.05 1.12 2.96 -89.49 -0.26 0.86 16 13 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 14 C -0.52 -13.61 8.56 -34.44 -0.29 -13.91 16 15 H 0.06 1.56 7.79 -52.49 -0.41 1.15 16 16 C 0.06 1.75 5.34 -17.82 -0.10 1.65 16 17 N -0.89 -25.10 12.06 55.43 0.67 -24.43 16 18 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 C 0.12 2.92 5.64 -2.53 -0.01 2.91 16 23 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 25 H 0.10 1.64 5.89 -51.92 -0.31 1.33 16 26 H 0.16 1.49 8.06 -52.48 -0.42 1.07 16 27 H 0.19 2.35 3.72 -52.49 -0.20 2.16 16 28 H 0.06 0.84 6.95 -51.93 -0.36 0.48 16 29 H 0.06 0.92 6.69 -51.93 -0.35 0.57 16 30 H 0.07 1.26 8.03 -51.93 -0.42 0.84 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.09 2.35 7.37 -51.93 -0.38 1.97 16 34 H 0.05 1.40 8.03 -51.93 -0.42 0.98 16 LS Contribution 290.75 15.07 4.38 4.38 Total: -1.00 -29.84 290.75 -8.27 -38.12 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -4.08 Total: 1.42 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -1.25 Total: -8.59 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.10 Total: -37.52 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.08 Total: -12.69 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -2.48 Total: -0.83 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.84 -8.27 -38.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397753956.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.351 kcal (2) G-P(sol) polarization free energy of solvation -29.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds