Wall clock time and date at job start Mon Mar 30 2020 06:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.32778 * 123.45993 * 2 1 4 4 S 1.75501 * 110.57805 * 179.97438 * 3 2 1 5 5 C 1.70448 * 92.44604 * 359.82020 * 4 3 2 6 6 C 1.36011 * 110.81785 * 0.31824 * 5 4 3 7 7 C 1.47184 * 123.46358 * 179.89187 * 6 5 4 8 8 O 1.21633 * 120.00079 * 186.41618 * 7 6 5 9 9 N 1.34776 * 119.99983 * 6.41407 * 7 6 5 10 10 C 1.47027 * 125.64697 * 355.31782 * 9 7 6 11 11 C 1.54322 * 107.40118 * 178.82403 * 10 9 7 12 12 C 1.55399 * 102.82800 * 337.97616 * 11 10 9 13 13 H 1.09005 * 110.89404 * 277.26674 * 12 11 10 14 14 C 1.50700 * 111.07050 * 153.48778 * 12 11 10 15 15 H 1.07998 * 120.00054 * 6.20560 * 14 12 11 16 16 C 1.37877 * 120.00144 * 186.20819 * 14 12 11 17 17 N 1.31519 * 119.99957 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 120.00364 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.46723 * 60.00245 * 18 16 14 20 20 H 1.48501 * 109.47492 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47095 * 300.00242 * 18 16 14 22 22 C 1.47419 * 125.65033 * 175.26980 * 9 7 6 23 23 H 1.08992 * 109.47429 * 270.02031 * 1 2 3 24 24 H 1.09003 * 109.47248 * 30.02326 * 1 2 3 25 25 H 1.09007 * 109.47186 * 150.02045 * 1 2 3 26 26 H 1.08003 * 124.70474 * 0.02562 * 3 2 1 27 27 H 1.07997 * 124.59320 * 180.20718 * 5 4 3 28 28 H 1.08996 * 109.88331 * 298.31987 * 10 9 7 29 29 H 1.08997 * 109.88334 * 59.32868 * 10 9 7 30 30 H 1.08996 * 110.72143 * 96.24549 * 11 10 9 31 31 H 1.08999 * 110.71919 * 219.52482 * 11 10 9 32 32 H 0.97001 * 119.99676 * 180.02562 * 17 16 14 33 33 H 1.09005 * 110.37085 * 323.00889 * 22 9 7 34 34 H 1.09003 * 110.37025 * 85.32922 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2390 1.1077 0.0000 4 16 3.9498 0.7165 0.0007 5 6 3.6411 -0.9598 0.0064 6 6 2.3033 -1.2049 0.0006 7 6 1.7263 -2.5590 0.0011 8 8 0.5254 -2.7084 -0.1220 9 7 2.5285 -3.6333 0.1380 10 6 3.9973 -3.6039 0.1975 11 6 4.4806 -5.0571 0.3875 12 6 3.2319 -5.7602 0.9885 13 1 3.1742 -5.5970 2.0647 14 6 3.2325 -7.2327 0.6677 15 1 4.0849 -7.6780 0.1763 16 6 2.1448 -8.0114 1.0017 17 7 1.1065 -7.4691 1.5997 18 14 2.1451 -9.8365 0.6035 19 1 3.2829 -10.4939 1.2954 20 1 0.8694 -10.4434 1.0612 21 1 2.2831 -10.0231 -0.8633 22 6 2.0786 -5.0324 0.2539 23 1 -0.3634 0.0004 1.0276 24 1 -0.3634 0.8898 -0.5142 25 1 -0.3634 -0.8902 -0.5135 26 1 1.8373 2.1103 0.0004 27 1 4.4044 -1.7238 0.0119 28 1 4.3978 -3.1985 -0.7316 29 1 4.3220 -2.9921 1.0391 30 1 4.7497 -5.5024 -0.5703 31 1 5.3199 -5.0966 1.0818 32 1 0.3415 -8.0171 1.8349 33 1 1.1608 -5.0886 0.8392 34 1 1.9259 -5.4650 -0.7349 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397753956.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:57 Heat of formation + Delta-G solvation = -16.088449 kcal Electronic energy + Delta-G solvation = -17813.625913 eV Core-core repulsion = 15030.455841 eV Total energy + Delta-G solvation = -2783.170072 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.25909 -38.80020 -37.81722 -35.07979 -32.96669 -31.60323 -29.88795 -28.60134 -26.96977 -25.70754 -23.37980 -21.87011 -21.17704 -19.65224 -18.57199 -18.28012 -17.58278 -16.90050 -16.35660 -16.23121 -15.53500 -15.01416 -14.50160 -14.41129 -14.27208 -14.18826 -13.63794 -13.50253 -13.46481 -13.06540 -12.99473 -12.79581 -12.75207 -12.48626 -12.21379 -11.82848 -11.62221 -11.12555 -11.07898 -10.78061 -10.57520 -9.85139 -9.64395 -9.15845 -8.18040 -6.31015 -0.18922 0.67429 0.97052 0.98753 1.42907 1.44604 1.52410 2.11017 2.32169 2.42445 3.14808 3.72395 3.75525 3.90272 4.19487 4.23826 4.27432 4.49377 4.55066 4.63538 4.66940 4.75397 4.80382 4.94848 4.99484 5.12779 5.16714 5.25459 5.35132 5.51193 5.59164 5.66145 5.84028 6.24035 6.65039 6.81292 7.18223 7.39470 8.90611 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.036870 B = 0.004848 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.240610 B = 5773.658985 C = 6414.466994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.082 4.082 3 C -0.240 4.240 4 S 0.250 5.750 5 C -0.229 4.229 6 C -0.180 4.180 7 C 0.569 3.431 8 O -0.589 6.589 9 N -0.614 5.614 10 C 0.093 3.907 11 C -0.119 4.119 12 C 0.038 3.962 13 H 0.009 0.991 14 C -0.531 4.531 15 H 0.070 0.930 16 C 0.010 3.990 17 N -0.923 5.923 18 Si 0.961 3.039 19 H -0.264 1.264 20 H -0.290 1.290 21 H -0.269 1.269 22 C 0.137 3.863 23 H 0.064 0.936 24 H 0.089 0.911 25 H 0.059 0.941 26 H 0.197 0.803 27 H 0.203 0.797 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.261 0.739 33 H 0.037 0.963 34 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.901 17.487 -3.371 19.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.092 4.092 3 C -0.374 4.374 4 S 0.517 5.483 5 C -0.367 4.367 6 C -0.198 4.198 7 C 0.359 3.641 8 O -0.473 6.473 9 N -0.346 5.346 10 C -0.029 4.029 11 C -0.157 4.157 12 C 0.018 3.982 13 H 0.027 0.973 14 C -0.569 4.569 15 H 0.089 0.911 16 C -0.189 4.189 17 N -0.562 5.562 18 Si 0.786 3.214 19 H -0.188 1.188 20 H -0.216 1.216 21 H -0.194 1.194 22 C 0.015 3.985 23 H 0.083 0.917 24 H 0.108 0.892 25 H 0.078 0.922 26 H 0.214 0.786 27 H 0.220 0.780 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 9.419 18.316 -3.375 20.870 hybrid contribution -2.112 -2.358 0.040 3.166 sum 7.307 15.958 -3.335 17.865 Atomic orbital electron populations 1.20589 0.89407 1.03369 1.02452 1.19952 0.97700 0.90340 1.01250 1.25635 0.97343 1.02821 1.11619 1.82583 1.03838 0.94161 1.67692 1.26930 0.99817 1.05518 1.04408 1.20106 0.93774 0.92753 1.13146 1.18015 0.85409 0.84259 0.76432 1.90667 1.16414 1.86832 1.53359 1.48819 1.08600 1.07003 1.70159 1.22638 0.78862 0.99160 1.02218 1.22760 0.98297 0.92633 1.02005 1.19807 0.90570 0.93883 0.93894 0.97257 1.21370 1.02834 0.93340 1.39365 0.91144 1.25913 0.95198 1.03305 0.94511 1.70107 1.06876 1.37627 1.41550 0.85563 0.77350 0.79646 0.78853 1.18835 1.21618 1.19432 1.22194 0.99905 0.78214 0.98232 0.91690 0.89198 0.92188 0.78619 0.78028 0.88873 0.89351 0.90738 0.88812 0.92973 0.94392 0.94997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.86 9.63 71.23 0.69 -2.17 16 2 C -0.08 -2.32 6.01 -19.47 -0.12 -2.44 16 3 C -0.24 -4.76 10.91 66.64 0.73 -4.03 16 4 S 0.25 4.15 23.02 -56.49 -1.30 2.85 16 5 C -0.23 -5.50 9.41 67.30 0.63 -4.87 16 6 C -0.18 -5.88 5.97 -19.87 -0.12 -6.00 16 7 C 0.57 24.54 7.81 86.59 0.68 25.21 16 8 O -0.59 -30.01 14.49 -4.14 -0.06 -30.07 16 9 N -0.61 -26.07 3.33 -815.94 -2.71 -28.78 16 10 C 0.09 2.90 4.93 86.73 0.43 3.32 16 11 C -0.12 -4.22 6.42 31.87 0.20 -4.01 16 12 C 0.04 1.85 2.96 -10.06 -0.03 1.82 16 13 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 14 C -0.53 -28.25 8.56 25.60 0.22 -28.04 16 15 H 0.07 3.53 7.79 -2.91 -0.02 3.51 16 16 C 0.01 0.56 5.34 84.65 0.45 1.01 16 17 N -0.92 -55.11 12.06 21.45 0.26 -54.85 16 18 Si 0.96 43.27 29.54 68.60 2.03 45.29 16 19 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 20 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 22 C 0.14 7.06 5.64 86.86 0.49 7.55 16 23 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.09 1.92 8.13 -2.39 -0.02 1.90 16 25 H 0.06 2.18 5.89 -2.38 -0.01 2.16 16 26 H 0.20 2.55 8.06 -2.91 -0.02 2.53 16 27 H 0.20 4.14 3.72 -2.91 -0.01 4.13 16 28 H 0.09 2.31 6.95 -2.39 -0.02 2.30 16 29 H 0.09 2.32 6.69 -2.39 -0.02 2.31 16 30 H 0.07 2.56 8.03 -2.39 -0.02 2.54 16 31 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 33 H 0.04 2.27 7.37 -2.38 -0.02 2.26 16 34 H 0.03 1.73 8.03 -2.39 -0.02 1.71 16 Total: -1.00 -71.11 290.75 3.57 -67.53 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 1.11 Total: 10.67 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: 4.25 Total: -12.63 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -2.46 Total: -83.64 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.06 Total: -30.07 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -1.30 Total: 2.85 kcal Total: -71.11 3.57 -67.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397753956.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.443 kcal (2) G-P(sol) polarization free energy of solvation -71.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds