Wall clock time and date at job start Mon Mar 30 2020 06:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.32767 * 123.46233 * 2 1 4 4 S 1.75507 * 110.57746 * 179.97438 * 3 2 1 5 5 C 1.70445 * 92.44298 * 359.82288 * 4 3 2 6 6 C 1.36004 * 110.81917 * 0.31777 * 5 4 3 7 7 C 1.47194 * 123.45983 * 179.89168 * 6 5 4 8 8 O 1.21639 * 119.99834 * 215.08470 * 7 6 5 9 9 N 1.34773 * 120.00073 * 35.09312 * 7 6 5 10 10 C 1.47428 * 125.64798 * 355.04081 * 9 7 6 11 11 C 1.54913 * 104.83124 * 156.14160 * 10 9 7 12 12 C 1.55154 * 101.57912 * 37.01191 * 11 10 9 13 13 H 1.09005 * 110.87493 * 82.93121 * 12 11 10 14 14 C 1.50698 * 110.71718 * 206.13216 * 12 11 10 15 15 H 1.07990 * 120.00648 * 358.75346 * 14 12 11 16 16 C 1.37880 * 119.99550 * 178.75386 * 14 12 11 17 17 N 1.31511 * 120.00656 * 5.06807 * 16 14 12 18 18 Si 1.86804 * 119.99849 * 185.07362 * 16 14 12 19 19 H 1.48502 * 109.47455 * 84.99634 * 18 16 14 20 20 H 1.48502 * 109.46972 * 205.00203 * 18 16 14 21 21 H 1.48507 * 109.46906 * 324.99341 * 18 16 14 22 22 C 1.47019 * 125.64925 * 175.36321 * 9 7 6 23 23 H 1.09006 * 109.46930 * 270.02208 * 1 2 3 24 24 H 1.09001 * 109.47164 * 30.01423 * 1 2 3 25 25 H 1.08994 * 109.47657 * 150.01727 * 1 2 3 26 26 H 1.08004 * 124.70976 * 359.95296 * 3 2 1 27 27 H 1.08005 * 124.58658 * 180.20709 * 5 4 3 28 28 H 1.08993 * 110.37157 * 274.98465 * 10 9 7 29 29 H 1.09007 * 110.36205 * 37.30911 * 10 9 7 30 30 H 1.09004 * 111.00081 * 278.93778 * 11 10 9 31 31 H 1.08996 * 111.03577 * 155.10269 * 11 10 9 32 32 H 0.96994 * 120.00911 * 180.02562 * 17 16 14 33 33 H 1.08997 * 109.87915 * 300.20190 * 22 9 7 34 34 H 1.09004 * 109.88578 * 61.36757 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2390 1.1076 0.0000 4 16 3.9499 0.7162 0.0007 5 6 3.6410 -0.9600 0.0063 6 6 2.3032 -1.2050 0.0005 7 6 1.7261 -2.5591 0.0010 8 8 0.6976 -2.7821 -0.6090 9 7 2.3372 -3.5518 0.6773 10 6 3.6348 -3.4480 1.3694 11 6 3.5994 -4.5601 2.4473 12 6 2.8453 -5.6926 1.7016 13 1 3.5269 -6.2632 1.0708 14 6 2.1422 -6.5985 2.6793 15 1 2.2277 -6.4179 3.7406 16 6 1.3898 -7.6582 2.2188 17 7 1.3658 -7.9386 0.9342 18 14 0.4041 -8.6954 3.4197 19 1 -0.9117 -8.0522 3.6653 20 1 0.1941 -10.0496 2.8476 21 1 1.1464 -8.8090 4.7009 22 6 1.8235 -4.9195 0.8415 23 1 -0.3633 0.0004 1.0277 24 1 -0.3633 0.8899 -0.5141 25 1 -0.3634 -0.8901 -0.5135 26 1 1.8374 2.1102 -0.0007 27 1 4.4043 -1.7241 0.0118 28 1 4.4527 -3.6229 0.6705 29 1 3.7376 -2.4690 1.8377 30 1 3.0441 -4.2341 3.3268 31 1 4.6072 -4.8744 2.7184 32 1 0.8362 -8.6838 0.6101 33 1 0.8577 -4.8946 1.3462 34 1 1.7226 -5.3971 -0.1332 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397753958.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:59 Heat of formation + Delta-G solvation = -9.578782 kcal Electronic energy + Delta-G solvation = -17801.322055 eV Core-core repulsion = 15018.434263 eV Total energy + Delta-G solvation = -2782.887792 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.73410 -37.44532 -36.34761 -33.11117 -31.44914 -30.18190 -28.22843 -27.49560 -25.24856 -24.01897 -22.11530 -20.35907 -19.44580 -18.22716 -17.37152 -16.57701 -16.26372 -15.42717 -14.65972 -14.49393 -14.27640 -13.67574 -13.28434 -13.19840 -12.66202 -12.47713 -12.39454 -12.06452 -11.93188 -11.76872 -11.61919 -11.37579 -10.97177 -10.90477 -10.61970 -10.57914 -9.93637 -9.42615 -9.30718 -9.10422 -8.84075 -8.51718 -8.30600 -7.85827 -6.12399 -4.16535 0.89113 1.57550 1.92319 2.17528 3.28082 3.35328 3.36654 3.45557 3.75080 4.37905 4.73253 4.98552 5.18472 5.23522 5.33891 5.45614 5.54092 5.67674 5.77785 5.81170 5.82155 6.01947 6.18904 6.27946 6.43984 6.58204 6.68426 6.83972 6.90177 7.01144 7.41835 7.66165 7.85523 8.19683 8.27205 8.70758 8.86983 9.49197 10.97720 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.033948 B = 0.004879 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.597630 B = 5737.009382 C = 6169.152596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.052 4.052 3 C -0.244 4.244 4 S 0.157 5.843 5 C -0.214 4.214 6 C -0.136 4.136 7 C 0.579 3.421 8 O -0.543 6.543 9 N -0.604 5.604 10 C 0.094 3.906 11 C -0.129 4.129 12 C 0.045 3.955 13 H 0.044 0.956 14 C -0.520 4.520 15 H 0.061 0.939 16 C 0.065 3.935 17 N -0.886 5.886 18 Si 0.893 3.107 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.124 3.876 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.093 0.907 26 H 0.166 0.834 27 H 0.173 0.827 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.264 0.736 33 H 0.061 0.939 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.373 16.419 -0.669 17.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.064 4.064 3 C -0.379 4.379 4 S 0.423 5.577 5 C -0.351 4.351 6 C -0.154 4.154 7 C 0.366 3.634 8 O -0.423 6.423 9 N -0.336 5.336 10 C -0.029 4.029 11 C -0.167 4.167 12 C 0.026 3.974 13 H 0.062 0.938 14 C -0.558 4.558 15 H 0.079 0.921 16 C -0.138 4.138 17 N -0.523 5.523 18 Si 0.721 3.279 19 H -0.204 1.204 20 H -0.212 1.212 21 H -0.199 1.199 22 C 0.003 3.997 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.112 0.888 26 H 0.183 0.817 27 H 0.190 0.810 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.054 17.077 -1.169 18.156 hybrid contribution -1.729 -1.520 0.541 2.365 sum 4.325 15.557 -0.628 16.159 Atomic orbital electron populations 1.20666 0.88984 1.04114 1.02706 1.19855 0.97411 0.89962 0.99181 1.25208 0.96261 1.02325 1.14099 1.82834 1.05964 0.97627 1.71278 1.25805 0.99883 1.02121 1.07315 1.20318 0.92270 0.94730 1.08065 1.17250 0.83891 0.82854 0.79432 1.90729 1.24567 1.83023 1.43981 1.48790 1.21444 1.12809 1.50594 1.22519 0.85478 0.99931 0.94987 1.22884 1.00804 0.95944 0.97055 1.19742 0.92811 0.91172 0.93693 0.93811 1.20987 1.30828 1.11266 0.92690 0.92079 1.25035 0.96516 0.97006 0.95227 1.69940 1.40006 1.29266 1.13049 0.86585 0.80682 0.79456 0.81180 1.20448 1.21193 1.19851 1.22520 0.99232 0.77152 1.00794 0.91202 0.91655 0.88847 0.81690 0.80955 0.92237 0.91633 0.91471 0.91396 0.92624 0.92072 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 9.93 36.00 0.36 -1.08 16 2 C -0.05 -0.75 6.00 -104.06 -0.62 -1.38 16 3 C -0.24 -2.79 10.91 28.86 0.31 -2.48 16 4 S 0.16 1.64 23.02 -107.50 -2.48 -0.84 16 5 C -0.21 -2.85 8.86 29.93 0.27 -2.58 16 6 C -0.14 -2.23 5.60 -104.63 -0.59 -2.81 16 7 C 0.58 11.84 7.50 -12.62 -0.09 11.74 16 8 O -0.54 -12.79 15.27 5.24 0.08 -12.71 16 9 N -0.60 -12.42 3.33 -171.87 -0.57 -12.99 16 10 C 0.09 1.58 5.24 -2.52 -0.01 1.56 16 11 C -0.13 -2.43 6.50 -24.58 -0.16 -2.59 16 12 C 0.04 1.07 2.77 -89.94 -0.25 0.82 16 13 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 14 C -0.52 -13.71 8.37 -34.44 -0.29 -14.00 16 15 H 0.06 1.58 7.77 -52.49 -0.41 1.17 16 16 C 0.07 1.77 5.32 -17.82 -0.09 1.68 16 17 N -0.89 -25.15 12.86 55.43 0.71 -24.44 16 18 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 22 C 0.12 3.00 5.83 -3.07 -0.02 2.98 16 23 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 25 H 0.09 1.53 6.04 -51.93 -0.31 1.22 16 26 H 0.17 1.43 8.06 -52.48 -0.42 1.00 16 27 H 0.17 2.09 5.99 -52.48 -0.31 1.77 16 28 H 0.06 0.89 7.51 -51.93 -0.39 0.50 16 29 H 0.07 0.96 6.56 -51.93 -0.34 0.62 16 30 H 0.07 1.28 8.03 -51.93 -0.42 0.86 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.06 1.62 7.81 -51.93 -0.41 1.22 16 34 H 0.06 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 294.93 15.07 4.44 4.44 Total: -1.00 -30.17 294.93 -8.28 -38.45 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -4.26 Total: 0.31 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -1.19 Total: -8.13 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.14 Total: -37.42 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.08 Total: -12.71 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.48 Total: -0.84 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.17 -8.28 -38.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397753958.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.873 kcal (2) G-P(sol) polarization free energy of solvation -30.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds