Wall clock time and date at job start Mon Mar 30 2020 06:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.32767 * 123.46233 * 2 1 4 4 S 1.75507 * 110.57746 * 179.97438 * 3 2 1 5 5 C 1.70445 * 92.44298 * 359.82288 * 4 3 2 6 6 C 1.36004 * 110.81917 * 0.31777 * 5 4 3 7 7 C 1.47194 * 123.45983 * 179.89168 * 6 5 4 8 8 O 1.21639 * 119.99834 * 215.08470 * 7 6 5 9 9 N 1.34773 * 120.00073 * 35.09312 * 7 6 5 10 10 C 1.47428 * 125.64798 * 355.04081 * 9 7 6 11 11 C 1.54913 * 104.83124 * 156.14160 * 10 9 7 12 12 C 1.55154 * 101.57912 * 37.01191 * 11 10 9 13 13 H 1.09005 * 110.87493 * 82.93121 * 12 11 10 14 14 C 1.50698 * 110.71718 * 206.13216 * 12 11 10 15 15 H 1.07990 * 120.00648 * 358.75346 * 14 12 11 16 16 C 1.37880 * 119.99550 * 178.75386 * 14 12 11 17 17 N 1.31511 * 120.00656 * 5.06807 * 16 14 12 18 18 Si 1.86804 * 119.99849 * 185.07362 * 16 14 12 19 19 H 1.48502 * 109.47455 * 84.99634 * 18 16 14 20 20 H 1.48502 * 109.46972 * 205.00203 * 18 16 14 21 21 H 1.48507 * 109.46906 * 324.99341 * 18 16 14 22 22 C 1.47019 * 125.64925 * 175.36321 * 9 7 6 23 23 H 1.09006 * 109.46930 * 270.02208 * 1 2 3 24 24 H 1.09001 * 109.47164 * 30.01423 * 1 2 3 25 25 H 1.08994 * 109.47657 * 150.01727 * 1 2 3 26 26 H 1.08004 * 124.70976 * 359.95296 * 3 2 1 27 27 H 1.08005 * 124.58658 * 180.20709 * 5 4 3 28 28 H 1.08993 * 110.37157 * 274.98465 * 10 9 7 29 29 H 1.09007 * 110.36205 * 37.30911 * 10 9 7 30 30 H 1.09004 * 111.00081 * 278.93778 * 11 10 9 31 31 H 1.08996 * 111.03577 * 155.10269 * 11 10 9 32 32 H 0.96994 * 120.00911 * 180.02562 * 17 16 14 33 33 H 1.08997 * 109.87915 * 300.20190 * 22 9 7 34 34 H 1.09004 * 109.88578 * 61.36757 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2390 1.1076 0.0000 4 16 3.9499 0.7162 0.0007 5 6 3.6410 -0.9600 0.0063 6 6 2.3032 -1.2050 0.0005 7 6 1.7261 -2.5591 0.0010 8 8 0.6976 -2.7821 -0.6090 9 7 2.3372 -3.5518 0.6773 10 6 3.6348 -3.4480 1.3694 11 6 3.5994 -4.5601 2.4473 12 6 2.8453 -5.6926 1.7016 13 1 3.5269 -6.2632 1.0708 14 6 2.1422 -6.5985 2.6793 15 1 2.2277 -6.4179 3.7406 16 6 1.3898 -7.6582 2.2188 17 7 1.3658 -7.9386 0.9342 18 14 0.4041 -8.6954 3.4197 19 1 -0.9117 -8.0522 3.6653 20 1 0.1941 -10.0496 2.8476 21 1 1.1464 -8.8090 4.7009 22 6 1.8235 -4.9195 0.8415 23 1 -0.3633 0.0004 1.0277 24 1 -0.3633 0.8899 -0.5141 25 1 -0.3634 -0.8901 -0.5135 26 1 1.8374 2.1102 -0.0007 27 1 4.4043 -1.7241 0.0118 28 1 4.4527 -3.6229 0.6705 29 1 3.7376 -2.4690 1.8377 30 1 3.0441 -4.2341 3.3268 31 1 4.6072 -4.8744 2.7184 32 1 0.8362 -8.6838 0.6101 33 1 0.8577 -4.8946 1.3462 34 1 1.7226 -5.3971 -0.1332 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397753958.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:59 Heat of formation + Delta-G solvation = -28.112869 kcal Electronic energy + Delta-G solvation = -17802.125754 eV Core-core repulsion = 15018.434263 eV Total energy + Delta-G solvation = -2783.691490 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.22400 -38.82803 -37.84041 -35.03697 -32.90373 -31.63312 -29.86162 -28.65264 -27.01091 -25.52574 -23.51089 -21.85593 -21.09076 -19.46664 -18.53270 -18.39619 -17.74587 -17.10209 -16.42476 -16.11299 -15.63312 -14.82098 -14.63201 -14.37295 -14.31533 -14.10386 -13.74784 -13.44110 -13.34188 -13.24517 -12.95971 -12.82496 -12.78954 -12.47965 -12.33658 -11.86918 -11.70031 -11.16222 -11.11332 -10.89791 -10.59423 -9.84613 -9.63339 -9.16835 -8.20921 -6.31239 -0.14531 0.66596 0.94744 1.04169 1.40177 1.42417 1.51194 1.97054 2.25372 2.41312 3.12450 3.70499 3.74739 3.92749 4.22957 4.28490 4.30072 4.46975 4.57461 4.60014 4.65154 4.73776 4.79508 4.89626 4.97722 5.09091 5.17167 5.25084 5.30102 5.50241 5.54938 5.64852 5.82361 6.24342 6.62118 6.80406 7.13331 7.38302 8.89083 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.033948 B = 0.004879 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.597630 B = 5737.009382 C = 6169.152596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.084 4.084 3 C -0.235 4.235 4 S 0.253 5.747 5 C -0.216 4.216 6 C -0.173 4.173 7 C 0.573 3.427 8 O -0.591 6.591 9 N -0.612 5.612 10 C 0.098 3.902 11 C -0.118 4.118 12 C 0.037 3.963 13 H 0.021 0.979 14 C -0.531 4.531 15 H 0.066 0.934 16 C 0.012 3.988 17 N -0.922 5.922 18 Si 0.956 3.044 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.259 1.259 22 C 0.143 3.857 23 H 0.069 0.931 24 H 0.093 0.907 25 H 0.053 0.947 26 H 0.198 0.802 27 H 0.185 0.815 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.262 0.738 33 H 0.024 0.976 34 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.592 19.330 0.594 20.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.095 4.095 3 C -0.369 4.369 4 S 0.520 5.480 5 C -0.354 4.354 6 C -0.191 4.191 7 C 0.362 3.638 8 O -0.474 6.474 9 N -0.343 5.343 10 C -0.023 4.023 11 C -0.156 4.156 12 C 0.018 3.982 13 H 0.039 0.961 14 C -0.569 4.569 15 H 0.084 0.916 16 C -0.187 4.187 17 N -0.560 5.560 18 Si 0.781 3.219 19 H -0.206 1.206 20 H -0.210 1.210 21 H -0.183 1.183 22 C 0.020 3.980 23 H 0.088 0.912 24 H 0.112 0.888 25 H 0.072 0.928 26 H 0.215 0.785 27 H 0.202 0.798 28 H 0.102 0.898 29 H 0.116 0.884 30 H 0.084 0.916 31 H 0.114 0.886 32 H 0.071 0.929 33 H 0.043 0.957 34 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 8.314 20.020 0.121 21.678 hybrid contribution -2.329 -2.305 0.109 3.279 sum 5.986 17.714 0.229 18.700 Atomic orbital electron populations 1.20592 0.89490 1.03511 1.02587 1.19885 0.97584 0.90246 1.01802 1.25634 0.97272 1.02834 1.11198 1.82601 1.03778 0.93669 1.67940 1.26092 0.98823 1.05188 1.05340 1.20045 0.93863 0.92614 1.12614 1.18045 0.83238 0.84388 0.78123 1.90691 1.26806 1.84064 1.45856 1.48832 1.22860 1.11309 1.51313 1.22728 0.84110 1.00785 0.94672 1.22816 1.01440 0.94363 0.96970 1.19671 0.92655 0.92319 0.93544 0.96080 1.21410 1.30638 1.11492 0.93395 0.91573 1.25863 0.97631 0.98529 0.96701 1.70078 1.41080 1.29929 1.14919 0.85596 0.79055 0.77674 0.79558 1.20609 1.21040 1.18277 1.21944 0.98095 0.79715 0.98233 0.91183 0.88847 0.92757 0.78483 0.79818 0.89829 0.88382 0.91640 0.88556 0.92883 0.95715 0.95997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.80 9.93 71.23 0.71 -2.09 16 2 C -0.08 -2.29 6.00 -19.47 -0.12 -2.41 16 3 C -0.23 -4.40 10.91 66.64 0.73 -3.67 16 4 S 0.25 4.00 23.02 -56.49 -1.30 2.69 16 5 C -0.22 -5.06 8.86 67.30 0.60 -4.47 16 6 C -0.17 -5.50 5.60 -19.87 -0.11 -5.61 16 7 C 0.57 24.29 7.50 86.60 0.65 24.93 16 8 O -0.59 -29.94 15.27 -4.16 -0.06 -30.00 16 9 N -0.61 -25.80 3.33 -815.91 -2.71 -28.52 16 10 C 0.10 3.12 5.24 86.86 0.46 3.58 16 11 C -0.12 -4.28 6.50 31.99 0.21 -4.08 16 12 C 0.04 1.83 2.77 -10.35 -0.03 1.80 16 13 H 0.02 1.12 8.14 -2.38 -0.02 1.10 16 14 C -0.53 -28.64 8.37 25.60 0.21 -28.43 16 15 H 0.07 3.42 7.77 -2.92 -0.02 3.39 16 16 C 0.01 0.69 5.32 84.66 0.45 1.14 16 17 N -0.92 -54.76 12.86 21.45 0.28 -54.49 16 18 Si 0.96 43.76 29.54 68.60 2.03 45.78 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 22 C 0.14 7.37 5.83 86.73 0.51 7.88 16 23 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 24 H 0.09 1.89 8.13 -2.39 -0.02 1.87 16 25 H 0.05 1.90 6.04 -2.39 -0.01 1.89 16 26 H 0.20 2.34 8.06 -2.91 -0.02 2.32 16 27 H 0.18 3.75 5.99 -2.91 -0.02 3.73 16 28 H 0.08 2.27 7.51 -2.39 -0.02 2.26 16 29 H 0.10 2.51 6.56 -2.38 -0.02 2.50 16 30 H 0.06 2.40 8.03 -2.38 -0.02 2.38 16 31 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 32 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 33 H 0.02 1.41 7.81 -2.39 -0.02 1.39 16 34 H 0.02 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -71.27 294.93 3.58 -67.69 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 1.10 Total: 8.26 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 4.26 Total: -11.42 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -2.44 Total: -83.00 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.06 Total: -30.00 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: 4.00 SS G_CDS: -1.30 Total: 2.69 kcal Total: -71.27 3.58 -67.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397753958.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.576 kcal (2) G-P(sol) polarization free energy of solvation -71.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds