Wall clock time and date at job start Mon Mar 30 2020 06:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32773 * 124.71280 * 2 1 4 4 C 1.44424 * 113.08488 * 180.14074 * 3 2 1 5 5 C 1.47189 * 123.46204 * 179.80498 * 4 3 2 6 6 O 1.21637 * 119.99735 * 171.85800 * 5 4 3 7 7 N 1.34774 * 119.99993 * 351.86405 * 5 4 3 8 8 C 1.47422 * 125.64650 * 353.73868 * 7 5 4 9 9 C 1.55124 * 104.94143 * 204.04273 * 8 7 5 10 10 C 1.55162 * 101.48601 * 323.22183 * 9 8 7 11 11 H 1.08996 * 110.71645 * 276.83046 * 10 9 8 12 12 C 1.50699 * 110.71917 * 153.73639 * 10 9 8 13 13 H 1.08000 * 120.00433 * 2.43566 * 12 10 9 14 14 C 1.37879 * 119.99645 * 182.44450 * 12 10 9 15 15 N 1.31508 * 120.00189 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 119.99646 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47595 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47004 * 239.99778 * 16 14 12 19 19 H 1.48503 * 109.47050 * 119.99948 * 16 14 12 20 20 C 1.47022 * 125.64840 * 173.78426 * 7 5 4 21 21 C 1.36012 * 113.07586 * 359.54179 * 4 3 2 22 22 S 1.70450 * 110.81816 * 0.24445 * 21 4 3 23 23 H 1.08998 * 109.47409 * 180.31854 * 1 2 3 24 24 H 1.09005 * 109.47259 * 300.31154 * 1 2 3 25 25 H 1.09000 * 109.47605 * 60.31383 * 1 2 3 26 26 H 1.08001 * 123.45719 * 359.93698 * 3 2 1 27 27 H 1.08997 * 110.36815 * 323.00094 * 8 7 5 28 28 H 1.08993 * 110.37009 * 85.22226 * 8 7 5 29 29 H 1.09000 * 111.16582 * 205.13468 * 9 8 7 30 30 H 1.09001 * 110.93824 * 81.21506 * 9 8 7 31 31 H 0.97000 * 120.00091 * 0.02562 * 15 14 12 32 32 H 1.08999 * 109.88355 * 59.48214 * 20 7 5 33 33 H 1.09004 * 109.88020 * 298.32085 * 20 7 5 34 34 H 1.07998 * 124.58859 * 180.24046 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2630 1.0914 0.0000 4 6 3.6776 0.8003 -0.0033 5 6 4.7200 1.8395 -0.0081 6 8 5.8874 1.5306 0.1385 7 7 4.3811 3.1332 -0.1749 8 6 3.0310 3.6337 -0.4911 9 6 3.2632 5.0085 -1.1712 10 6 4.4737 5.5509 -0.3661 11 1 4.1419 6.0182 0.5611 12 6 5.2726 6.5235 -1.1949 13 1 4.9445 6.7808 -2.1912 14 6 6.4225 7.0846 -0.6814 15 7 6.8219 6.7716 0.5319 16 14 7.4131 8.2896 -1.7090 17 1 6.7564 8.4719 -3.0283 18 1 8.7854 7.7583 -1.9089 19 1 7.4856 9.5962 -1.0069 20 6 5.2967 4.2789 -0.0725 21 6 3.9476 -0.5327 0.0043 22 16 2.5063 -1.4427 0.0086 23 1 -0.3634 -1.0276 0.0057 24 1 -0.3634 0.5187 0.8872 25 1 -0.3634 0.5089 -0.8928 26 1 1.8614 2.0940 -0.0010 27 1 2.5242 2.9523 -1.1744 28 1 2.4486 3.7572 0.4219 29 1 2.3947 5.6568 -1.0550 30 1 3.5181 4.8843 -2.2237 31 1 6.3077 6.1456 1.0653 32 1 6.0986 4.1792 -0.8040 33 1 5.7140 4.3312 0.9332 34 1 4.9407 -0.9571 0.0072 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397786887.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:33 Heat of formation + Delta-G solvation = -4.646523 kcal Electronic energy + Delta-G solvation = -17699.283455 eV Core-core repulsion = 14916.609542 eV Total energy + Delta-G solvation = -2782.673913 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.81037 -37.32874 -36.67344 -33.29761 -32.08659 -30.51525 -28.33175 -26.71371 -25.58249 -23.64834 -22.54625 -20.01218 -19.80419 -18.83842 -17.60534 -16.84420 -15.88251 -15.36702 -15.32138 -14.23633 -14.15231 -13.77932 -13.61831 -13.39537 -13.05088 -12.76267 -12.43260 -12.19607 -12.04151 -11.92100 -11.73662 -11.33527 -11.12387 -10.79846 -10.51684 -10.13312 -10.10141 -9.65273 -9.54522 -8.85249 -8.64566 -8.48191 -8.45616 -7.97927 -6.41719 -4.16689 0.80609 1.44940 1.82198 2.04190 3.42161 3.45872 3.58913 3.60151 3.67182 4.48920 4.55307 4.94728 5.04026 5.17713 5.27064 5.30765 5.31392 5.39515 5.56470 5.67030 5.69244 5.83476 5.97809 6.12573 6.22771 6.27000 6.52283 6.68592 6.71607 6.83824 7.12703 7.42958 8.07574 8.09501 8.35992 8.61937 8.79012 9.55648 10.95972 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.039544 B = 0.004563 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.900140 B = 6135.411085 C = 6618.348705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.203 4.203 3 C -0.131 4.131 4 C -0.144 4.144 5 C 0.580 3.420 6 O -0.548 6.548 7 N -0.604 5.604 8 C 0.090 3.910 9 C -0.122 4.122 10 C 0.027 3.973 11 H 0.033 0.967 12 C -0.596 4.596 13 H 0.055 0.945 14 C 0.021 3.979 15 N -0.906 5.906 16 Si 1.075 2.925 17 H -0.289 1.289 18 H -0.286 1.286 19 H -0.286 1.286 20 C 0.113 3.887 21 C -0.187 4.187 22 S 0.164 5.836 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.166 0.834 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.272 0.728 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.911 -13.387 -1.348 19.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.319 4.319 3 C -0.159 4.159 4 C -0.161 4.161 5 C 0.367 3.633 6 O -0.428 6.428 7 N -0.336 5.336 8 C -0.033 4.033 9 C -0.160 4.160 10 C 0.008 3.992 11 H 0.051 0.949 12 C -0.634 4.634 13 H 0.074 0.926 14 C -0.184 4.184 15 N -0.542 5.542 16 Si 0.903 3.097 17 H -0.215 1.215 18 H -0.213 1.213 19 H -0.213 1.213 20 C -0.009 4.009 21 C -0.325 4.325 22 S 0.430 5.570 23 H 0.085 0.915 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.183 0.817 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -12.215 -14.200 -1.230 18.771 hybrid contribution -0.860 0.514 0.054 1.004 sum -13.075 -13.685 -1.176 18.964 Atomic orbital electron populations 1.20319 0.87555 1.02786 1.03182 1.24383 1.00315 0.95994 1.11224 1.21968 0.91320 1.00627 1.02028 1.20346 0.93579 0.93353 1.08811 1.17284 0.87392 0.81064 0.77557 1.90770 1.19224 1.81375 1.51449 1.48602 1.11430 1.05550 1.68009 1.22778 0.84695 0.96944 0.98885 1.22837 0.99724 0.93329 1.00080 1.19915 0.91742 0.91501 0.96016 0.94941 1.21926 1.11346 1.27560 1.02608 0.92630 1.25888 0.96240 0.98916 0.97395 1.70763 1.40767 1.33379 1.09287 0.83457 0.75820 0.75780 0.74661 1.21463 1.21263 1.21262 1.22753 0.93254 0.84220 1.00648 1.25465 1.04363 0.97054 1.05633 1.82853 0.94124 1.09028 1.71005 0.91505 0.90507 0.90469 0.81675 0.90834 0.91914 0.91222 0.91259 0.91662 0.91444 0.92913 0.80905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.35 36.00 0.37 -0.23 16 2 C -0.20 -2.22 6.44 -36.18 -0.23 -2.45 16 3 C -0.13 -1.74 8.50 -39.02 -0.33 -2.07 16 4 C -0.14 -2.36 5.92 -104.63 -0.62 -2.98 16 5 C 0.58 12.08 7.80 -12.63 -0.10 11.98 16 6 O -0.55 -13.36 17.08 5.24 0.09 -13.27 16 7 N -0.60 -12.51 3.33 -171.74 -0.57 -13.08 16 8 C 0.09 1.49 4.98 -2.41 -0.01 1.48 16 9 C -0.12 -2.30 6.52 -24.46 -0.16 -2.46 16 10 C 0.03 0.66 2.46 -89.94 -0.22 0.43 16 11 H 0.03 0.81 8.00 -51.93 -0.42 0.40 16 12 C -0.60 -16.10 8.38 -34.44 -0.29 -16.39 16 13 H 0.06 1.49 7.77 -52.49 -0.41 1.08 16 14 C 0.02 0.58 5.34 -17.82 -0.10 0.49 16 15 N -0.91 -26.92 13.45 55.43 0.75 -26.18 16 16 Si 1.07 24.89 29.90 -169.99 -5.08 19.81 16 17 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 20 C 0.11 2.74 5.47 -3.06 -0.02 2.73 16 21 C -0.19 -2.66 10.53 29.93 0.32 -2.34 16 22 S 0.16 1.74 23.00 -107.50 -2.47 -0.73 16 23 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.17 2.01 4.25 -52.49 -0.22 1.79 16 27 H 0.07 1.05 5.96 -51.93 -0.31 0.74 16 28 H 0.06 0.93 7.47 -51.93 -0.39 0.54 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.07 1.35 8.03 -51.93 -0.42 0.93 16 31 H 0.27 8.01 5.63 -40.82 -0.23 7.78 16 32 H 0.07 1.84 7.81 -51.93 -0.41 1.43 16 33 H 0.05 1.36 7.01 -51.93 -0.36 1.00 16 34 H 0.17 2.40 8.03 -52.49 -0.42 1.98 16 LS Contribution 293.32 15.07 4.42 4.42 Total: -1.00 -32.16 293.32 -8.33 -40.49 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -4.07 Total: 0.35 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -1.39 Total: -11.81 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.17 Total: -39.25 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.09 Total: -13.27 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.08 Total: 19.81 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.47 Total: -0.73 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.16 -8.33 -40.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397786887.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.839 kcal (2) G-P(sol) polarization free energy of solvation -32.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds