Wall clock time and date at job start Mon Mar 30 2020 06:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32773 * 124.71280 * 2 1 4 4 C 1.44424 * 113.08488 * 180.14074 * 3 2 1 5 5 C 1.47189 * 123.46204 * 179.80498 * 4 3 2 6 6 O 1.21637 * 119.99735 * 171.85800 * 5 4 3 7 7 N 1.34774 * 119.99993 * 351.86405 * 5 4 3 8 8 C 1.47422 * 125.64650 * 353.73868 * 7 5 4 9 9 C 1.55124 * 104.94143 * 204.04273 * 8 7 5 10 10 C 1.55162 * 101.48601 * 323.22183 * 9 8 7 11 11 H 1.08996 * 110.71645 * 276.83046 * 10 9 8 12 12 C 1.50699 * 110.71917 * 153.73639 * 10 9 8 13 13 H 1.08000 * 120.00433 * 2.43566 * 12 10 9 14 14 C 1.37879 * 119.99645 * 182.44450 * 12 10 9 15 15 N 1.31508 * 120.00189 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 119.99646 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47595 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47004 * 239.99778 * 16 14 12 19 19 H 1.48503 * 109.47050 * 119.99948 * 16 14 12 20 20 C 1.47022 * 125.64840 * 173.78426 * 7 5 4 21 21 C 1.36012 * 113.07586 * 359.54179 * 4 3 2 22 22 S 1.70450 * 110.81816 * 0.24445 * 21 4 3 23 23 H 1.08998 * 109.47409 * 180.31854 * 1 2 3 24 24 H 1.09005 * 109.47259 * 300.31154 * 1 2 3 25 25 H 1.09000 * 109.47605 * 60.31383 * 1 2 3 26 26 H 1.08001 * 123.45719 * 359.93698 * 3 2 1 27 27 H 1.08997 * 110.36815 * 323.00094 * 8 7 5 28 28 H 1.08993 * 110.37009 * 85.22226 * 8 7 5 29 29 H 1.09000 * 111.16582 * 205.13468 * 9 8 7 30 30 H 1.09001 * 110.93824 * 81.21506 * 9 8 7 31 31 H 0.97000 * 120.00091 * 0.02562 * 15 14 12 32 32 H 1.08999 * 109.88355 * 59.48214 * 20 7 5 33 33 H 1.09004 * 109.88020 * 298.32085 * 20 7 5 34 34 H 1.07998 * 124.58859 * 180.24046 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2630 1.0914 0.0000 4 6 3.6776 0.8003 -0.0033 5 6 4.7200 1.8395 -0.0081 6 8 5.8874 1.5306 0.1385 7 7 4.3811 3.1332 -0.1749 8 6 3.0310 3.6337 -0.4911 9 6 3.2632 5.0085 -1.1712 10 6 4.4737 5.5509 -0.3661 11 1 4.1419 6.0182 0.5611 12 6 5.2726 6.5235 -1.1949 13 1 4.9445 6.7808 -2.1912 14 6 6.4225 7.0846 -0.6814 15 7 6.8219 6.7716 0.5319 16 14 7.4131 8.2896 -1.7090 17 1 6.7564 8.4719 -3.0283 18 1 8.7854 7.7583 -1.9089 19 1 7.4856 9.5962 -1.0069 20 6 5.2967 4.2789 -0.0725 21 6 3.9476 -0.5327 0.0043 22 16 2.5063 -1.4427 0.0086 23 1 -0.3634 -1.0276 0.0057 24 1 -0.3634 0.5187 0.8872 25 1 -0.3634 0.5089 -0.8928 26 1 1.8614 2.0940 -0.0010 27 1 2.5242 2.9523 -1.1744 28 1 2.4486 3.7572 0.4219 29 1 2.3947 5.6568 -1.0550 30 1 3.5181 4.8843 -2.2237 31 1 6.3077 6.1456 1.0653 32 1 6.0986 4.1792 -0.8040 33 1 5.7140 4.3312 0.9332 34 1 4.9407 -0.9571 0.0072 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397786887.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:33 Heat of formation + Delta-G solvation = -24.950202 kcal Electronic energy + Delta-G solvation = -17700.163889 eV Core-core repulsion = 14916.609542 eV Total energy + Delta-G solvation = -2783.554347 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.35318 -38.81386 -38.06891 -35.28596 -33.01141 -32.24590 -30.01430 -27.59276 -27.39586 -25.34935 -23.93516 -21.83679 -20.88117 -20.31801 -19.05983 -18.53670 -17.38663 -16.87346 -16.80409 -15.68976 -15.56945 -15.43022 -14.74554 -14.66514 -14.36932 -14.08157 -13.89081 -13.71493 -13.32562 -13.21333 -12.94536 -12.84873 -12.65667 -12.42485 -11.92490 -11.90358 -11.75390 -11.39184 -11.19183 -10.64853 -10.59285 -9.90469 -9.68305 -9.36773 -8.64358 -6.39706 -0.28213 0.52535 0.84208 0.91514 1.52797 1.61502 1.77151 2.03231 2.19629 2.56245 3.15078 3.51879 3.76890 3.77685 4.05756 4.19819 4.29310 4.31096 4.38071 4.43341 4.57629 4.66499 4.84242 4.88828 4.90510 4.99116 4.99765 5.16397 5.19057 5.29777 5.38966 5.50414 6.00607 6.15768 6.50553 6.57248 6.99936 7.41603 8.73675 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.039544 B = 0.004563 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.900140 B = 6135.411085 C = 6618.348705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.192 4.192 3 C -0.149 4.149 4 C -0.173 4.173 5 C 0.571 3.429 6 O -0.602 6.602 7 N -0.609 5.609 8 C 0.094 3.906 9 C -0.112 4.112 10 C 0.018 3.982 11 H 0.018 0.982 12 C -0.604 4.604 13 H 0.057 0.943 14 C -0.032 4.032 15 N -0.937 5.937 16 Si 1.119 2.881 17 H -0.266 1.266 18 H -0.288 1.288 19 H -0.277 1.277 20 C 0.130 3.870 21 C -0.206 4.206 22 S 0.248 5.752 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.092 0.908 26 H 0.176 0.824 27 H 0.109 0.891 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.259 0.741 32 H 0.025 0.975 33 H 0.022 0.978 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.423 -14.623 -2.358 22.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.309 4.309 3 C -0.176 4.176 4 C -0.191 4.191 5 C 0.361 3.639 6 O -0.486 6.486 7 N -0.340 5.340 8 C -0.026 4.026 9 C -0.150 4.150 10 C -0.001 4.001 11 H 0.036 0.964 12 C -0.642 4.642 13 H 0.076 0.924 14 C -0.231 4.231 15 N -0.575 5.575 16 Si 0.941 3.059 17 H -0.190 1.190 18 H -0.215 1.215 19 H -0.202 1.202 20 C 0.007 3.993 21 C -0.345 4.345 22 S 0.514 5.486 23 H 0.103 0.897 24 H 0.108 0.892 25 H 0.110 0.890 26 H 0.193 0.807 27 H 0.126 0.874 28 H 0.108 0.892 29 H 0.118 0.882 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.043 0.957 33 H 0.040 0.960 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -15.799 -15.448 -2.252 22.211 hybrid contribution 0.164 0.733 0.380 0.842 sum -15.634 -14.715 -1.872 21.551 Atomic orbital electron populations 1.20508 0.84605 1.04428 1.04505 1.24910 1.02195 0.95503 1.08321 1.21887 0.89577 1.02017 1.04090 1.20118 0.93949 0.92532 1.12467 1.18117 0.87922 0.81692 0.76125 1.90718 1.21791 1.82231 1.53855 1.48654 1.12397 1.04868 1.68103 1.23044 0.82873 0.96014 1.00715 1.22798 0.98324 0.94876 0.98981 1.19885 0.93688 0.90619 0.95940 0.96363 1.22330 1.11428 1.27551 1.02857 0.92434 1.27304 0.97768 1.00392 0.97609 1.70876 1.41461 1.34553 1.10577 0.82911 0.74516 0.74148 0.74357 1.19044 1.21477 1.20213 1.22196 0.93130 0.86532 0.97431 1.25700 1.06400 0.97349 1.05044 1.82605 0.90758 1.07128 1.68102 0.89747 0.89242 0.88968 0.80685 0.87360 0.89215 0.88152 0.91823 0.93008 0.95689 0.95956 0.81769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.35 71.23 0.74 -0.06 16 2 C -0.19 -3.41 6.44 24.51 0.16 -3.25 16 3 C -0.15 -3.52 8.50 22.67 0.19 -3.32 16 4 C -0.17 -5.57 5.92 -19.87 -0.12 -5.69 16 5 C 0.57 24.73 7.80 86.59 0.68 25.40 16 6 O -0.60 -31.39 17.08 -4.15 -0.07 -31.46 16 7 N -0.61 -25.89 3.33 -815.51 -2.71 -28.60 16 8 C 0.09 2.97 4.98 86.93 0.43 3.40 16 9 C -0.11 -4.08 6.52 32.06 0.21 -3.87 16 10 C 0.02 0.88 2.46 -10.35 -0.03 0.85 16 11 H 0.02 0.95 8.00 -2.39 -0.02 0.93 16 12 C -0.60 -33.26 8.38 25.60 0.21 -33.05 16 13 H 0.06 3.08 7.77 -2.91 -0.02 3.06 16 14 C -0.03 -1.83 5.34 84.66 0.45 -1.38 16 15 N -0.94 -58.17 13.45 21.45 0.29 -57.88 16 16 Si 1.12 50.67 29.90 68.60 2.05 52.72 16 17 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 18 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 19 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 20 C 0.13 6.75 5.47 86.73 0.47 7.23 16 21 C -0.21 -5.68 10.53 67.30 0.71 -4.97 16 22 S 0.25 4.37 23.00 -56.49 -1.30 3.07 16 23 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 25 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.18 3.62 4.25 -2.91 -0.01 3.61 16 27 H 0.11 2.72 5.96 -2.39 -0.01 2.71 16 28 H 0.09 2.38 7.47 -2.39 -0.02 2.37 16 29 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 30 H 0.06 2.39 8.03 -2.39 -0.02 2.37 16 31 H 0.26 16.26 5.63 -92.71 -0.52 15.74 16 32 H 0.02 1.46 7.81 -2.39 -0.02 1.44 16 33 H 0.02 1.25 7.01 -2.39 -0.02 1.24 16 34 H 0.16 4.67 8.03 -2.91 -0.02 4.65 16 Total: -1.00 -75.44 293.32 3.73 -71.71 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 1.36 Total: 9.16 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: 4.11 Total: -18.72 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -2.43 Total: -86.48 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -0.07 Total: -31.46 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 2.05 Total: 52.72 kcal Atomic # 16 Polarization: 4.37 SS G_CDS: -1.30 Total: 3.07 kcal Total: -75.44 3.73 -71.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397786887.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.760 kcal (2) G-P(sol) polarization free energy of solvation -75.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds