Wall clock time and date at job start Mon Mar 30 2020 06:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32768 * 124.71740 * 2 1 4 4 C 1.44425 * 113.08548 * 180.02562 * 3 2 1 5 5 C 1.47185 * 123.46160 * 180.27009 * 4 3 2 6 6 O 1.21640 * 120.00096 * 173.21109 * 5 4 3 7 7 N 1.34776 * 120.00245 * 353.20395 * 5 4 3 8 8 C 1.47028 * 125.64521 * 4.83430 * 7 5 4 9 9 C 1.54315 * 107.27002 * 181.01920 * 8 7 5 10 10 C 1.55156 * 102.94414 * 22.19155 * 9 8 7 11 11 H 1.08999 * 111.00661 * 82.57573 * 10 9 8 12 12 C 1.50704 * 111.00308 * 206.38952 * 10 9 8 13 13 H 1.07999 * 120.00079 * 359.97438 * 12 10 9 14 14 C 1.37875 * 119.99886 * 179.97438 * 12 10 9 15 15 N 1.31517 * 120.00366 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 120.00161 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.47032 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47317 * 120.00065 * 16 14 12 19 19 H 1.48499 * 109.47404 * 240.00219 * 16 14 12 20 20 C 1.47423 * 125.65171 * 184.51678 * 7 5 4 21 21 C 1.36008 * 113.07743 * 0.02562 * 4 3 2 22 22 S 1.70447 * 110.81885 * 359.97438 * 21 4 3 23 23 H 1.09000 * 109.47716 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46587 * 300.02296 * 1 2 3 25 25 H 1.08997 * 109.47368 * 60.01388 * 1 2 3 26 26 H 1.07998 * 123.45775 * 0.05034 * 3 2 1 27 27 H 1.08998 * 109.87699 * 300.43680 * 8 7 5 28 28 H 1.09003 * 109.88338 * 61.44073 * 8 7 5 29 29 H 1.09001 * 110.71965 * 140.55566 * 9 8 7 30 30 H 1.09004 * 110.72141 * 263.82524 * 9 8 7 31 31 H 0.97001 * 120.00322 * 179.97438 * 15 14 12 32 32 H 1.08997 * 110.36873 * 274.75442 * 20 7 5 33 33 H 1.09006 * 110.36162 * 37.07575 * 20 7 5 34 34 H 1.08006 * 124.59059 * 180.02562 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2631 1.0913 0.0000 4 6 3.6777 0.8001 -0.0006 5 6 4.7201 1.8392 0.0051 6 8 5.8893 1.5271 0.1288 7 7 4.3794 3.1364 -0.1269 8 6 3.0067 3.6603 -0.1834 9 6 3.1071 5.1895 -0.3641 10 6 4.5247 5.3761 -0.9666 11 1 4.5167 5.2084 -2.0436 12 6 5.0755 6.7401 -0.6393 13 1 4.4886 7.4336 -0.0553 14 6 6.3287 7.1027 -1.0853 15 7 7.0437 6.2580 -1.7960 16 14 7.0112 8.7937 -0.6803 17 1 6.0182 9.5482 0.1259 18 1 8.2690 8.6471 0.0954 19 1 7.2893 9.5300 -1.9395 20 6 5.3211 4.2658 -0.2319 21 6 3.9476 -0.5329 -0.0016 22 16 2.5063 -1.4428 -0.0011 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5142 0.8899 25 1 -0.3634 0.5136 -0.8901 26 1 1.8616 2.0939 0.0008 27 1 2.4770 3.2211 -1.0287 28 1 2.4827 3.4277 0.7436 29 1 2.3441 5.5471 -1.0555 30 1 3.0266 5.6975 0.5970 31 1 7.9252 6.5133 -2.1101 32 1 5.6205 4.6037 0.7602 33 1 6.1955 3.9775 -0.8154 34 1 4.9407 -0.9574 -0.0018 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397786889.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:35 Heat of formation + Delta-G solvation = -1.023026 kcal Electronic energy + Delta-G solvation = -17638.136921 eV Core-core repulsion = 14855.620135 eV Total energy + Delta-G solvation = -2782.516786 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.68363 -37.15250 -36.54332 -32.99913 -32.01806 -30.57366 -28.42637 -26.65014 -25.72256 -23.65933 -22.43724 -19.79555 -19.65811 -18.72078 -17.45191 -16.57471 -15.73117 -15.24735 -15.05844 -14.44485 -14.17393 -13.96365 -13.47826 -13.28089 -12.72518 -12.69019 -12.26164 -12.15390 -12.07724 -11.74918 -11.63499 -11.33124 -10.99576 -10.88724 -10.57384 -10.40017 -9.91249 -9.45458 -9.28175 -9.03875 -8.78739 -8.54076 -8.40833 -7.83821 -6.11073 -4.16610 0.88291 1.52296 1.89584 2.13530 3.26794 3.35532 3.38207 3.73867 3.78974 4.38020 4.62413 5.04027 5.11249 5.21285 5.30298 5.36524 5.41705 5.47454 5.59961 5.72959 5.80766 5.94106 6.07315 6.27367 6.35874 6.43000 6.71578 6.83225 6.95695 7.03951 7.41967 7.66257 7.88160 8.23725 8.27378 8.74619 8.87703 9.49702 10.98644 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.040380 B = 0.004523 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.253951 B = 6188.688015 C = 6744.567754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.203 4.203 3 C -0.134 4.134 4 C -0.143 4.143 5 C 0.579 3.421 6 O -0.550 6.550 7 N -0.605 5.605 8 C 0.095 3.905 9 C -0.132 4.132 10 C 0.047 3.953 11 H 0.043 0.957 12 C -0.518 4.518 13 H 0.062 0.938 14 C 0.064 3.936 15 N -0.885 5.885 16 Si 0.895 3.105 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.117 3.883 21 C -0.188 4.188 22 S 0.159 5.841 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.170 0.830 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.263 0.737 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.498 -12.176 3.014 18.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.320 4.320 3 C -0.163 4.163 4 C -0.160 4.160 5 C 0.366 3.634 6 O -0.431 6.431 7 N -0.337 5.337 8 C -0.028 4.028 9 C -0.170 4.170 10 C 0.028 3.972 11 H 0.061 0.939 12 C -0.556 4.556 13 H 0.080 0.920 14 C -0.139 4.139 15 N -0.522 5.522 16 Si 0.722 3.278 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.004 4.004 21 C -0.326 4.326 22 S 0.424 5.576 23 H 0.084 0.916 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.187 0.813 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -12.986 -13.961 2.992 19.300 hybrid contribution 0.971 2.351 0.173 2.549 sum -12.015 -11.610 3.165 17.005 Atomic orbital electron populations 1.20312 0.87633 1.02710 1.03141 1.24378 1.00252 0.95963 1.11383 1.22143 0.91392 1.00888 1.01831 1.20398 0.93655 0.93424 1.08482 1.17257 0.87383 0.81174 0.77549 1.90762 1.19261 1.81550 1.51500 1.48709 1.09105 1.05950 1.69939 1.22424 0.84140 0.96656 0.99555 1.22796 1.00991 0.91617 1.01562 1.19895 0.88116 0.93570 0.95669 0.93878 1.21011 1.01478 0.98514 1.34634 0.91965 1.25055 0.96999 0.97283 0.94541 1.69960 1.11592 1.35179 1.35466 0.86494 0.79041 0.84063 0.78181 1.19653 1.20921 1.20937 1.22845 0.93274 0.83844 1.00387 1.25449 1.04239 0.97073 1.05833 1.82827 0.94299 1.09211 1.71221 0.91575 0.90558 0.90495 0.81326 0.91871 0.92236 0.91537 0.91401 0.92686 0.92706 0.90193 0.80956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.35 36.00 0.37 -0.25 16 2 C -0.20 -2.30 6.44 -36.18 -0.23 -2.53 16 3 C -0.13 -1.83 8.70 -39.02 -0.34 -2.17 16 4 C -0.14 -2.39 5.96 -104.63 -0.62 -3.01 16 5 C 0.58 12.23 7.82 -12.63 -0.10 12.13 16 6 O -0.55 -13.54 17.03 5.24 0.09 -13.45 16 7 N -0.61 -12.65 3.32 -171.73 -0.57 -13.23 16 8 C 0.10 1.60 4.91 -3.07 -0.02 1.58 16 9 C -0.13 -2.46 6.39 -24.90 -0.16 -2.61 16 10 C 0.05 1.12 2.86 -89.50 -0.26 0.87 16 11 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 12 C -0.52 -13.63 8.50 -34.44 -0.29 -13.92 16 13 H 0.06 1.59 7.76 -52.49 -0.41 1.19 16 14 C 0.06 1.75 5.37 -17.82 -0.10 1.65 16 15 N -0.88 -25.31 12.55 55.43 0.70 -24.62 16 16 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 20 C 0.12 2.86 5.88 -2.41 -0.01 2.85 16 21 C -0.19 -2.74 10.53 29.93 0.32 -2.42 16 22 S 0.16 1.74 23.00 -107.50 -2.47 -0.73 16 23 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.17 2.10 3.81 -52.49 -0.20 1.90 16 27 H 0.06 0.95 6.67 -51.93 -0.35 0.60 16 28 H 0.06 0.86 6.89 -51.93 -0.36 0.50 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.07 1.24 8.01 -51.93 -0.42 0.83 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.05 1.39 8.04 -51.93 -0.42 0.97 16 33 H 0.08 2.22 7.69 -51.93 -0.40 1.82 16 34 H 0.17 2.46 8.03 -52.48 -0.42 2.04 16 LS Contribution 296.38 15.07 4.47 4.47 Total: -1.00 -30.98 296.38 -8.47 -39.44 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -4.21 Total: 0.14 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -1.44 Total: -7.84 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.12 Total: -37.84 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.09 Total: -13.45 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.47 Total: -0.73 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.98 -8.47 -39.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397786889.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.419 kcal (2) G-P(sol) polarization free energy of solvation -30.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds