Wall clock time and date at job start Mon Mar 30 2020 06:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32768 * 124.71740 * 2 1 4 4 C 1.44425 * 113.08548 * 180.02562 * 3 2 1 5 5 C 1.47185 * 123.46160 * 180.27009 * 4 3 2 6 6 O 1.21640 * 120.00096 * 173.21109 * 5 4 3 7 7 N 1.34776 * 120.00245 * 353.20395 * 5 4 3 8 8 C 1.47028 * 125.64521 * 4.83430 * 7 5 4 9 9 C 1.54315 * 107.27002 * 181.01920 * 8 7 5 10 10 C 1.55156 * 102.94414 * 22.19155 * 9 8 7 11 11 H 1.08999 * 111.00661 * 82.57573 * 10 9 8 12 12 C 1.50704 * 111.00308 * 206.38952 * 10 9 8 13 13 H 1.07999 * 120.00079 * 359.97438 * 12 10 9 14 14 C 1.37875 * 119.99886 * 179.97438 * 12 10 9 15 15 N 1.31517 * 120.00366 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 120.00161 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.47032 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47317 * 120.00065 * 16 14 12 19 19 H 1.48499 * 109.47404 * 240.00219 * 16 14 12 20 20 C 1.47423 * 125.65171 * 184.51678 * 7 5 4 21 21 C 1.36008 * 113.07743 * 0.02562 * 4 3 2 22 22 S 1.70447 * 110.81885 * 359.97438 * 21 4 3 23 23 H 1.09000 * 109.47716 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46587 * 300.02296 * 1 2 3 25 25 H 1.08997 * 109.47368 * 60.01388 * 1 2 3 26 26 H 1.07998 * 123.45775 * 0.05034 * 3 2 1 27 27 H 1.08998 * 109.87699 * 300.43680 * 8 7 5 28 28 H 1.09003 * 109.88338 * 61.44073 * 8 7 5 29 29 H 1.09001 * 110.71965 * 140.55566 * 9 8 7 30 30 H 1.09004 * 110.72141 * 263.82524 * 9 8 7 31 31 H 0.97001 * 120.00322 * 179.97438 * 15 14 12 32 32 H 1.08997 * 110.36873 * 274.75442 * 20 7 5 33 33 H 1.09006 * 110.36162 * 37.07575 * 20 7 5 34 34 H 1.08006 * 124.59059 * 180.02562 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2631 1.0913 0.0000 4 6 3.6777 0.8001 -0.0006 5 6 4.7201 1.8392 0.0051 6 8 5.8893 1.5271 0.1288 7 7 4.3794 3.1364 -0.1269 8 6 3.0067 3.6603 -0.1834 9 6 3.1071 5.1895 -0.3641 10 6 4.5247 5.3761 -0.9666 11 1 4.5167 5.2084 -2.0436 12 6 5.0755 6.7401 -0.6393 13 1 4.4886 7.4336 -0.0553 14 6 6.3287 7.1027 -1.0853 15 7 7.0437 6.2580 -1.7960 16 14 7.0112 8.7937 -0.6803 17 1 6.0182 9.5482 0.1259 18 1 8.2690 8.6471 0.0954 19 1 7.2893 9.5300 -1.9395 20 6 5.3211 4.2658 -0.2319 21 6 3.9476 -0.5329 -0.0016 22 16 2.5063 -1.4428 -0.0011 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5142 0.8899 25 1 -0.3634 0.5136 -0.8901 26 1 1.8616 2.0939 0.0008 27 1 2.4770 3.2211 -1.0287 28 1 2.4827 3.4277 0.7436 29 1 2.3441 5.5471 -1.0555 30 1 3.0266 5.6975 0.5970 31 1 7.9252 6.5133 -2.1101 32 1 5.6205 4.6037 0.7602 33 1 6.1955 3.9775 -0.8154 34 1 4.9407 -0.9574 -0.0018 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397786889.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:35 Heat of formation + Delta-G solvation = -20.277414 kcal Electronic energy + Delta-G solvation = -17638.971854 eV Core-core repulsion = 14855.620135 eV Total energy + Delta-G solvation = -2783.351719 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.22337 -38.58908 -37.99233 -34.96918 -32.98029 -32.29977 -30.08152 -27.64681 -27.43422 -25.31024 -23.80379 -21.59770 -20.77640 -20.17215 -18.70544 -18.47831 -17.12711 -16.83481 -16.69222 -16.25117 -15.48054 -15.04006 -14.63542 -14.40640 -14.31925 -14.15545 -13.68736 -13.60577 -13.33994 -13.04328 -12.88898 -12.83671 -12.80713 -12.45409 -12.28917 -11.72985 -11.59722 -11.15295 -11.07453 -10.95470 -10.60864 -9.81825 -9.58177 -9.30419 -8.18791 -6.31162 -0.22951 0.57220 0.88959 0.98913 1.41346 1.43628 1.55179 2.15942 2.29681 2.42652 3.14404 3.60647 3.85086 3.92875 4.17131 4.27773 4.36489 4.46983 4.51507 4.59653 4.68254 4.87209 4.94208 4.98181 5.03022 5.11034 5.18081 5.22182 5.34660 5.42526 5.50290 5.66122 5.83991 6.24705 6.62379 6.82317 7.11296 7.39520 8.90999 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.040380 B = 0.004523 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.253951 B = 6188.688015 C = 6744.567754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.193 4.193 3 C -0.151 4.151 4 C -0.172 4.172 5 C 0.570 3.430 6 O -0.605 6.605 7 N -0.611 5.611 8 C 0.097 3.903 9 C -0.120 4.120 10 C 0.038 3.962 11 H 0.012 0.988 12 C -0.527 4.527 13 H 0.071 0.929 14 C 0.009 3.991 15 N -0.925 5.925 16 Si 0.961 3.039 17 H -0.257 1.257 18 H -0.287 1.287 19 H -0.280 1.280 20 C 0.131 3.869 21 C -0.208 4.208 22 S 0.241 5.759 23 H 0.083 0.917 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.181 0.819 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.261 0.739 32 H 0.036 0.964 33 H 0.031 0.969 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.228 -12.802 3.739 21.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.310 4.310 3 C -0.178 4.178 4 C -0.189 4.189 5 C 0.359 3.641 6 O -0.489 6.489 7 N -0.341 5.341 8 C -0.024 4.024 9 C -0.158 4.158 10 C 0.019 3.981 11 H 0.031 0.969 12 C -0.565 4.565 13 H 0.089 0.911 14 C -0.190 4.190 15 N -0.563 5.563 16 Si 0.786 3.214 17 H -0.180 1.180 18 H -0.213 1.213 19 H -0.206 1.206 20 C 0.008 3.992 21 C -0.347 4.347 22 S 0.507 5.493 23 H 0.102 0.898 24 H 0.110 0.890 25 H 0.108 0.892 26 H 0.197 0.803 27 H 0.107 0.893 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -16.784 -14.584 3.722 22.544 hybrid contribution 2.080 2.392 -0.058 3.170 sum -14.703 -12.192 3.665 19.449 Atomic orbital electron populations 1.20500 0.84629 1.04354 1.04498 1.24913 1.02162 0.95448 1.08493 1.22064 0.89624 1.02296 1.03854 1.20183 0.94096 0.92632 1.12021 1.18062 0.87900 0.81857 0.76232 1.90709 1.21807 1.82387 1.53978 1.48744 1.10166 1.05383 1.69854 1.22694 0.82143 0.95142 1.02454 1.22732 0.97791 0.93264 1.01970 1.19805 0.91796 0.92445 0.94044 0.96944 1.21445 1.01577 0.99577 1.33931 0.91090 1.25928 0.97580 1.00982 0.94526 1.70123 1.11885 1.37247 1.37092 0.85456 0.78240 0.79681 0.78014 1.18027 1.21333 1.20598 1.22341 0.92805 0.85620 0.98397 1.25677 1.06247 0.97408 1.05366 1.82571 0.90961 1.07370 1.68407 0.89834 0.89049 0.89161 0.80275 0.89322 0.88757 0.88863 0.90728 0.92989 0.94536 0.95026 0.81889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.35 71.23 0.74 -0.11 16 2 C -0.19 -3.59 6.44 24.51 0.16 -3.43 16 3 C -0.15 -3.70 8.70 22.67 0.20 -3.51 16 4 C -0.17 -5.69 5.96 -19.87 -0.12 -5.81 16 5 C 0.57 25.07 7.82 86.59 0.68 25.74 16 6 O -0.60 -31.91 17.03 -4.16 -0.07 -31.99 16 7 N -0.61 -26.22 3.32 -815.48 -2.71 -28.94 16 8 C 0.10 3.06 4.91 86.72 0.43 3.49 16 9 C -0.12 -4.27 6.39 31.78 0.20 -4.06 16 10 C 0.04 1.90 2.86 -10.07 -0.03 1.87 16 11 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 12 C -0.53 -28.14 8.50 25.60 0.22 -27.92 16 13 H 0.07 3.58 7.76 -2.91 -0.02 3.56 16 14 C 0.01 0.50 5.37 84.65 0.45 0.96 16 15 N -0.92 -55.50 12.55 21.45 0.27 -55.23 16 16 Si 0.96 43.42 29.54 68.60 2.03 45.45 16 17 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 18 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 20 C 0.13 6.78 5.88 86.93 0.51 7.29 16 21 C -0.21 -5.96 10.53 67.30 0.71 -5.25 16 22 S 0.24 4.48 23.00 -56.49 -1.30 3.18 16 23 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 25 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.18 3.81 3.81 -2.91 -0.01 3.80 16 27 H 0.09 2.40 6.67 -2.39 -0.02 2.38 16 28 H 0.09 2.39 6.89 -2.39 -0.02 2.37 16 29 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 30 H 0.07 2.56 8.01 -2.38 -0.02 2.54 16 31 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 32 H 0.04 1.97 8.04 -2.39 -0.02 1.95 16 33 H 0.03 1.90 7.69 -2.38 -0.02 1.88 16 34 H 0.16 4.82 8.03 -2.91 -0.02 4.80 16 Total: -1.00 -72.87 296.38 3.46 -69.41 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 1.11 Total: 8.85 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 4.14 Total: -10.73 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -2.44 Total: -84.16 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.07 Total: -31.99 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: 4.48 SS G_CDS: -1.30 Total: 3.18 kcal Total: -72.87 3.46 -69.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397786889.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.129 kcal (2) G-P(sol) polarization free energy of solvation -72.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds