Wall clock time and date at job start Mon Mar 30 2020 06:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99825 * 2 1 4 4 H 1.48497 * 109.47036 * 269.99922 * 3 2 1 5 5 H 1.48507 * 109.47061 * 29.99665 * 3 2 1 6 6 H 1.48496 * 109.47259 * 149.99656 * 3 2 1 7 7 C 1.37870 * 120.00288 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00603 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99746 * 0.02562 * 7 2 1 10 10 H 1.08993 * 110.63857 * 298.30649 * 9 7 2 11 11 C 1.55149 * 110.71917 * 61.45230 * 9 7 2 12 12 C 1.54912 * 101.58276 * 154.03933 * 11 9 7 13 13 N 1.47424 * 104.83227 * 322.99076 * 12 11 9 14 14 C 1.34777 * 125.64879 * 204.08629 * 13 12 11 15 15 O 1.21283 * 119.99750 * 180.02562 * 14 13 12 16 16 C 1.50702 * 119.99928 * 0.30383 * 14 13 12 17 17 C 1.50700 * 109.46869 * 179.72354 * 16 14 13 18 18 C 1.38425 * 122.54133 * 90.00114 * 17 16 14 19 19 C 1.33389 * 114.91997 * 179.97438 * 18 17 16 20 20 S 1.75882 * 109.59535 * 359.97438 * 19 18 17 21 21 C 1.33384 * 122.53723 * 269.70776 * 17 16 14 22 22 C 1.47020 * 108.70071 * 24.35330 * 13 12 11 23 23 H 0.96994 * 119.99995 * 0.02562 * 1 2 3 24 24 H 1.09006 * 111.00811 * 35.97057 * 11 9 7 25 25 H 1.08998 * 111.03714 * 272.12985 * 11 9 7 26 26 H 1.08993 * 110.36878 * 204.14992 * 12 11 9 27 27 H 1.09004 * 110.45528 * 81.87464 * 12 11 9 28 28 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 29 29 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 30 30 H 1.08001 * 122.53521 * 359.95232 * 18 17 16 31 31 H 1.07999 * 125.20224 * 180.02562 * 19 18 17 32 32 H 1.08004 * 125.20612 * 0.02562 * 21 17 16 33 33 H 1.09004 * 109.88529 * 118.13378 * 22 13 12 34 34 H 1.09000 * 109.88341 * 239.29181 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6398 -2.5898 0.8983 11 6 0.3765 -2.6280 -1.2745 12 6 0.2682 -4.1662 -1.4232 13 7 1.5879 -4.6789 -1.0121 14 6 2.1252 -5.8563 -1.3884 15 8 3.2234 -6.1777 -0.9866 16 6 1.3639 -6.7706 -2.3134 17 6 2.1814 -8.0078 -2.5817 18 6 2.0953 -9.1426 -1.7936 19 6 2.8865 -10.1488 -2.1689 20 16 3.8060 -9.6771 -3.5920 21 6 3.0386 -8.0944 -3.6000 22 6 2.2181 -3.6961 -0.1186 23 1 -0.4850 0.8400 -0.0004 24 1 0.8757 -2.1864 -2.1371 25 1 -0.6055 -2.1801 -1.1224 26 1 0.0634 -4.4337 -2.4598 27 1 -0.5114 -4.5581 -0.7698 28 1 0.4192 -7.0530 -1.8487 29 1 1.1666 -6.2546 -3.2530 30 1 1.4377 -9.2080 -0.9394 31 1 2.9517 -11.1070 -1.6749 32 1 3.2330 -7.3119 -4.3185 33 1 2.3840 -4.1402 0.8629 34 1 3.1658 -3.3639 -0.5424 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397837470.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:47 Heat of formation + Delta-G solvation = -6.462494 kcal Electronic energy + Delta-G solvation = -17360.284008 eV Core-core repulsion = 14577.531348 eV Total energy + Delta-G solvation = -2782.752659 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.66832 -37.94536 -36.48227 -33.07032 -31.39331 -30.12557 -28.51222 -27.80341 -24.91020 -23.25241 -22.14259 -19.88785 -19.05583 -18.43901 -17.50601 -16.89586 -16.32172 -15.67051 -14.91350 -14.66911 -14.54387 -13.79288 -13.05355 -12.91311 -12.78019 -12.58966 -12.52218 -12.13615 -12.01761 -11.63678 -11.28446 -11.22193 -11.04365 -10.82783 -10.78258 -10.49811 -9.82545 -9.52481 -9.36560 -8.98762 -8.77099 -8.50494 -8.35416 -7.97819 -6.12579 -4.15811 1.02690 1.66997 1.97211 2.67338 3.07935 3.26375 3.33431 3.37345 3.69165 4.37396 4.82493 4.93404 5.08088 5.21242 5.27675 5.38151 5.50816 5.62358 5.65568 5.89290 5.98260 6.01585 6.21717 6.31643 6.39776 6.47589 6.64952 6.83862 7.00406 7.11224 7.46509 7.68826 7.86648 8.14883 8.26743 8.66015 8.85710 9.49217 10.97076 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.048707 B = 0.003694 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.724133 B = 7577.858481 C = 7776.320405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.059 0.941 9 C 0.043 3.957 10 H 0.039 0.961 11 C -0.107 4.107 12 C 0.090 3.910 13 N -0.611 5.611 14 C 0.521 3.479 15 O -0.548 6.548 16 C -0.079 4.079 17 C -0.078 4.078 18 C -0.118 4.118 19 C -0.215 4.215 20 S 0.083 5.917 21 C -0.198 4.198 22 C 0.111 3.889 23 H 0.261 0.739 24 H 0.059 0.941 25 H 0.084 0.916 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.138 0.862 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.048 0.952 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.245 -15.857 -6.899 17.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.077 0.923 9 C 0.024 3.976 10 H 0.057 0.943 11 C -0.146 4.146 12 C -0.033 4.033 13 N -0.344 5.344 14 C 0.308 3.692 15 O -0.426 6.426 16 C -0.121 4.121 17 C -0.091 4.091 18 C -0.148 4.148 19 C -0.350 4.350 20 S 0.346 5.654 21 C -0.333 4.333 22 C -0.010 4.010 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.103 0.897 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.156 0.844 31 H 0.180 0.820 32 H 0.180 0.820 33 H 0.066 0.934 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.314 -16.707 -7.610 18.406 hybrid contribution -0.678 1.692 0.897 2.031 sum 0.637 -15.015 -6.713 16.460 Atomic orbital electron populations 1.69935 1.05887 1.26758 1.50120 1.24941 0.94894 0.99131 0.94746 0.86556 0.79920 0.83177 0.78161 1.20643 1.21187 1.19815 1.21034 0.92954 0.89880 1.51474 0.92281 1.19718 0.92429 0.91106 0.94328 0.94318 1.22731 1.02441 0.89092 1.00308 1.22597 0.84119 0.98242 0.98353 1.48754 1.19623 1.18006 1.48064 1.20058 0.86327 0.80941 0.81844 1.90678 1.20733 1.74142 1.57052 1.20362 0.98473 0.92674 1.00627 1.18404 0.99473 0.95621 0.95582 1.20035 1.01405 0.92419 1.00968 1.25472 1.03357 1.03925 1.02272 1.84093 1.44192 1.09220 1.27895 1.25385 1.02616 1.00703 1.04626 1.22321 0.98094 0.89045 0.91568 0.92883 0.92233 0.89712 0.92179 0.92252 0.88194 0.88227 0.84396 0.82023 0.82032 0.93392 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.09 12.11 55.43 0.67 -23.42 16 2 C 0.07 1.73 5.33 -17.82 -0.10 1.63 16 3 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.52 -13.61 8.51 -34.44 -0.29 -13.90 16 8 H 0.06 1.57 7.58 -52.49 -0.40 1.17 16 9 C 0.04 1.02 2.85 -89.93 -0.26 0.77 16 10 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 11 C -0.11 -2.26 5.75 -24.59 -0.14 -2.40 16 12 C 0.09 1.51 6.69 -2.53 -0.02 1.49 16 13 N -0.61 -11.57 3.33 -170.51 -0.57 -12.14 16 14 C 0.52 9.44 7.84 -10.98 -0.09 9.35 16 15 O -0.55 -11.94 16.36 5.55 0.09 -11.85 16 16 C -0.08 -1.04 4.96 -29.03 -0.14 -1.19 16 17 C -0.08 -1.05 4.29 -106.25 -0.46 -1.51 16 18 C -0.12 -1.47 9.98 -41.21 -0.41 -1.88 16 19 C -0.22 -2.40 11.23 29.04 0.33 -2.08 16 20 S 0.08 0.93 23.34 -107.50 -2.51 -1.58 16 21 C -0.20 -2.52 10.98 29.04 0.32 -2.21 16 22 C 0.11 2.42 6.47 -3.06 -0.02 2.40 16 23 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 24 H 0.06 1.32 8.04 -51.93 -0.42 0.90 16 25 H 0.08 1.88 7.53 -51.93 -0.39 1.49 16 26 H 0.06 0.84 7.47 -51.93 -0.39 0.45 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.10 1.11 8.13 -51.93 -0.42 0.68 16 29 H 0.10 1.13 7.82 -51.93 -0.41 0.73 16 30 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.16 1.38 8.06 -52.49 -0.42 0.95 16 32 H 0.16 1.84 8.06 -52.48 -0.42 1.41 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.06 1.39 7.67 -51.93 -0.40 0.99 16 LS Contribution 302.05 15.07 4.55 4.55 Total: -1.00 -29.88 302.05 -8.55 -38.43 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -4.49 Total: -0.10 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -1.28 Total: -9.53 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.10 Total: -35.56 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.51 Total: -1.58 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.88 -8.55 -38.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397837470.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.966 kcal (2) G-P(sol) polarization free energy of solvation -29.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds