Wall clock time and date at job start Mon Mar 30 2020 06:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99825 * 2 1 4 4 H 1.48497 * 109.47036 * 269.99922 * 3 2 1 5 5 H 1.48507 * 109.47061 * 29.99665 * 3 2 1 6 6 H 1.48496 * 109.47259 * 149.99656 * 3 2 1 7 7 C 1.37870 * 120.00288 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00603 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99746 * 0.02562 * 7 2 1 10 10 H 1.08993 * 110.63857 * 298.30649 * 9 7 2 11 11 C 1.55149 * 110.71917 * 61.45230 * 9 7 2 12 12 C 1.54912 * 101.58276 * 154.03933 * 11 9 7 13 13 N 1.47424 * 104.83227 * 322.99076 * 12 11 9 14 14 C 1.34777 * 125.64879 * 204.08629 * 13 12 11 15 15 O 1.21283 * 119.99750 * 180.02562 * 14 13 12 16 16 C 1.50702 * 119.99928 * 0.30383 * 14 13 12 17 17 C 1.50700 * 109.46869 * 179.72354 * 16 14 13 18 18 C 1.38425 * 122.54133 * 90.00114 * 17 16 14 19 19 C 1.33389 * 114.91997 * 179.97438 * 18 17 16 20 20 S 1.75882 * 109.59535 * 359.97438 * 19 18 17 21 21 C 1.33384 * 122.53723 * 269.70776 * 17 16 14 22 22 C 1.47020 * 108.70071 * 24.35330 * 13 12 11 23 23 H 0.96994 * 119.99995 * 0.02562 * 1 2 3 24 24 H 1.09006 * 111.00811 * 35.97057 * 11 9 7 25 25 H 1.08998 * 111.03714 * 272.12985 * 11 9 7 26 26 H 1.08993 * 110.36878 * 204.14992 * 12 11 9 27 27 H 1.09004 * 110.45528 * 81.87464 * 12 11 9 28 28 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 29 29 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 30 30 H 1.08001 * 122.53521 * 359.95232 * 18 17 16 31 31 H 1.07999 * 125.20224 * 180.02562 * 19 18 17 32 32 H 1.08004 * 125.20612 * 0.02562 * 21 17 16 33 33 H 1.09004 * 109.88529 * 118.13378 * 22 13 12 34 34 H 1.09000 * 109.88341 * 239.29181 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6398 -2.5898 0.8983 11 6 0.3765 -2.6280 -1.2745 12 6 0.2682 -4.1662 -1.4232 13 7 1.5879 -4.6789 -1.0121 14 6 2.1252 -5.8563 -1.3884 15 8 3.2234 -6.1777 -0.9866 16 6 1.3639 -6.7706 -2.3134 17 6 2.1814 -8.0078 -2.5817 18 6 2.0953 -9.1426 -1.7936 19 6 2.8865 -10.1488 -2.1689 20 16 3.8060 -9.6771 -3.5920 21 6 3.0386 -8.0944 -3.6000 22 6 2.2181 -3.6961 -0.1186 23 1 -0.4850 0.8400 -0.0004 24 1 0.8757 -2.1864 -2.1371 25 1 -0.6055 -2.1801 -1.1224 26 1 0.0634 -4.4337 -2.4598 27 1 -0.5114 -4.5581 -0.7698 28 1 0.4192 -7.0530 -1.8487 29 1 1.1666 -6.2546 -3.2530 30 1 1.4377 -9.2080 -0.9394 31 1 2.9517 -11.1070 -1.6749 32 1 3.2330 -7.3119 -4.3185 33 1 2.3840 -4.1402 0.8629 34 1 3.1658 -3.3639 -0.5424 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397837470.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:47 Heat of formation + Delta-G solvation = -23.333311 kcal Electronic energy + Delta-G solvation = -17361.015581 eV Core-core repulsion = 14577.531348 eV Total energy + Delta-G solvation = -2783.484233 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.06557 -39.11478 -37.96946 -34.97024 -32.72282 -31.56777 -30.07229 -28.97120 -26.72469 -24.43145 -23.52570 -21.61714 -20.40825 -19.49319 -18.69495 -18.42205 -17.89426 -17.03711 -16.51681 -16.23207 -15.90489 -15.21980 -14.49021 -14.27500 -13.96251 -13.89773 -13.76924 -13.36905 -13.15188 -13.07117 -12.98811 -12.87662 -12.67202 -12.55286 -12.29494 -11.69696 -11.57294 -11.35743 -10.96040 -10.85315 -10.50587 -9.67710 -9.54240 -9.25934 -8.16118 -6.25358 0.12309 0.80076 1.08833 1.41970 1.43968 1.53254 1.66891 1.69789 2.29184 2.44892 3.15687 3.72526 3.93735 4.05873 4.11108 4.33549 4.39314 4.48718 4.49988 4.55712 4.60701 4.74739 4.79325 4.82693 5.12142 5.14431 5.30022 5.38279 5.49178 5.55854 5.60674 5.80349 5.88505 6.28469 6.69870 6.80235 7.22363 7.42145 8.92607 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.048707 B = 0.003694 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.724133 B = 7577.858481 C = 7776.320405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.024 3.976 3 Si 0.952 3.048 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.048 0.952 9 C 0.037 3.963 10 H 0.017 0.983 11 C -0.100 4.100 12 C 0.101 3.899 13 N -0.615 5.615 14 C 0.518 3.482 15 O -0.590 6.590 16 C -0.068 4.068 17 C -0.097 4.097 18 C -0.139 4.139 19 C -0.214 4.214 20 S 0.098 5.902 21 C -0.216 4.216 22 C 0.122 3.878 23 H 0.264 0.736 24 H 0.043 0.957 25 H 0.071 0.929 26 H 0.101 0.899 27 H 0.080 0.920 28 H 0.128 0.872 29 H 0.124 0.876 30 H 0.149 0.851 31 H 0.187 0.813 32 H 0.170 0.830 33 H 0.041 0.959 34 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.886 -16.959 -7.938 18.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.177 4.177 3 Si 0.778 3.222 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.199 1.199 7 C -0.576 4.576 8 H 0.066 0.934 9 C 0.018 3.982 10 H 0.035 0.965 11 C -0.138 4.138 12 C -0.021 4.021 13 N -0.348 5.348 14 C 0.309 3.691 15 O -0.471 6.471 16 C -0.110 4.110 17 C -0.109 4.109 18 C -0.169 4.169 19 C -0.350 4.350 20 S 0.362 5.638 21 C -0.351 4.351 22 C -0.001 4.001 23 H 0.073 0.927 24 H 0.062 0.938 25 H 0.090 0.910 26 H 0.120 0.880 27 H 0.099 0.901 28 H 0.146 0.854 29 H 0.142 0.858 30 H 0.167 0.833 31 H 0.204 0.796 32 H 0.187 0.813 33 H 0.059 0.941 34 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.655 -17.822 -8.665 19.828 hybrid contribution -0.426 1.994 1.242 2.388 sum 0.229 -15.828 -7.423 17.484 Atomic orbital electron populations 1.70018 1.06793 1.27513 1.50421 1.25597 0.95724 1.01910 0.94422 0.85649 0.78670 0.79617 0.78279 1.20052 1.20592 1.19899 1.21316 0.92762 0.91614 1.51937 0.93410 1.19637 0.92868 0.90912 0.94782 0.96472 1.22498 1.00704 0.92576 0.98061 1.22612 0.83452 0.94623 1.01368 1.48813 1.20221 1.18027 1.47730 1.20985 0.85994 0.80625 0.81520 1.90656 1.22852 1.74944 1.58657 1.20387 0.98603 0.91558 1.00407 1.18587 1.00132 0.96061 0.96152 1.20256 1.02394 0.92615 1.01600 1.25855 1.02405 1.04719 1.01972 1.84031 1.43705 1.08280 1.27808 1.25664 1.02747 1.01761 1.04956 1.21943 0.96928 0.89318 0.91941 0.92710 0.93794 0.91002 0.88048 0.90141 0.85390 0.85810 0.83340 0.79593 0.81273 0.94052 0.94275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.57 12.11 21.45 0.26 -49.31 16 2 C 0.02 1.26 5.33 84.65 0.45 1.72 16 3 Si 0.95 42.57 29.54 68.60 2.03 44.59 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.54 -29.11 8.51 25.60 0.22 -28.89 16 8 H 0.05 2.62 7.58 -2.91 -0.02 2.60 16 9 C 0.04 1.79 2.85 -10.35 -0.03 1.76 16 10 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 11 C -0.10 -4.18 5.75 31.98 0.18 -3.99 16 12 C 0.10 3.14 6.69 86.86 0.58 3.73 16 13 N -0.62 -22.51 3.33 -811.76 -2.70 -25.21 16 14 C 0.52 17.97 7.84 87.66 0.69 18.66 16 15 O -0.59 -25.53 16.36 -3.04 -0.05 -25.58 16 16 C -0.07 -1.58 4.96 29.10 0.14 -1.44 16 17 C -0.10 -2.39 4.29 -20.92 -0.09 -2.48 16 18 C -0.14 -3.16 9.98 21.22 0.21 -2.95 16 19 C -0.21 -4.31 11.23 66.72 0.75 -3.56 16 20 S 0.10 2.03 23.34 -56.49 -1.32 0.71 16 21 C -0.22 -5.13 10.98 66.72 0.73 -4.39 16 22 C 0.12 5.39 6.47 86.73 0.56 5.95 16 23 H 0.26 13.69 8.31 -92.71 -0.77 12.92 16 24 H 0.04 1.94 8.04 -2.38 -0.02 1.92 16 25 H 0.07 3.18 7.53 -2.39 -0.02 3.16 16 26 H 0.10 2.38 7.47 -2.39 -0.02 2.36 16 27 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 28 H 0.13 2.29 8.13 -2.38 -0.02 2.27 16 29 H 0.12 2.31 7.82 -2.39 -0.02 2.29 16 30 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 31 H 0.19 2.65 8.06 -2.91 -0.02 2.63 16 32 H 0.17 3.57 8.06 -2.91 -0.02 3.55 16 33 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.04 1.87 7.67 -2.39 -0.02 1.85 16 Total: -1.00 -65.32 302.05 3.71 -61.61 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 1.09 Total: 9.09 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: 4.40 Total: -15.89 kcal Atomic # 7 Polarization: -72.09 SS G_CDS: -2.44 Total: -74.53 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.05 Total: -25.58 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -1.32 Total: 0.71 kcal Total: -65.32 3.71 -61.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397837470.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.277 kcal (2) G-P(sol) polarization free energy of solvation -65.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds