Wall clock time and date at job start Mon Mar 30 2020 06:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.07999 * 119.99964 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00047 * 180.02562 * 7 2 1 10 10 H 1.09001 * 110.88662 * 59.29441 * 9 7 2 11 11 C 1.55169 * 111.00251 * 295.42152 * 9 7 2 12 12 C 1.54374 * 102.91612 * 206.45289 * 11 9 7 13 13 N 1.47020 * 107.28963 * 22.13559 * 12 11 9 14 14 C 1.34778 * 125.64630 * 181.05388 * 13 12 11 15 15 O 1.21281 * 119.99814 * 180.02562 * 14 13 12 16 16 C 1.50704 * 120.00198 * 0.04232 * 14 13 12 17 17 C 1.50695 * 109.46979 * 179.97438 * 16 14 13 18 18 C 1.38425 * 122.53555 * 90.00456 * 17 16 14 19 19 C 1.33390 * 114.91998 * 179.97438 * 18 17 16 20 20 S 1.75885 * 109.59344 * 0.02562 * 19 18 17 21 21 C 1.33381 * 122.54371 * 269.71024 * 17 16 14 22 22 C 1.47423 * 108.70250 * 1.09429 * 13 12 11 23 23 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 24 24 H 1.09000 * 110.71416 * 324.78346 * 11 9 7 25 25 H 1.08995 * 110.72065 * 88.06125 * 11 9 7 26 26 H 1.08992 * 109.84603 * 262.72779 * 12 11 9 27 27 H 1.09003 * 110.02453 * 141.64867 * 12 11 9 28 28 H 1.08998 * 109.47129 * 300.00219 * 16 14 13 29 29 H 1.09003 * 109.46580 * 60.00240 * 16 14 13 30 30 H 1.07999 * 122.54381 * 359.95599 * 18 17 16 31 31 H 1.07997 * 125.20254 * 180.02562 * 19 18 17 32 32 H 1.08005 * 125.20076 * 0.02575 * 21 17 16 33 33 H 1.09009 * 110.36200 * 217.02774 * 22 13 12 34 34 H 1.09003 * 110.46504 * 94.76024 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 1.4646 -2.1294 0.0099 9 6 3.5116 -1.1941 0.0064 10 1 3.8999 -0.6701 0.8797 11 6 4.0682 -0.5784 -1.3046 12 6 5.4496 -1.2534 -1.4436 13 7 5.4089 -2.4970 -0.6605 14 6 6.4294 -3.3646 -0.5107 15 8 6.2823 -4.3636 0.1611 16 6 7.7533 -3.0932 -1.1775 17 6 8.7163 -4.2062 -0.8539 18 6 8.8354 -5.3396 -1.6397 19 6 9.7347 -6.2275 -1.2128 20 16 10.4936 -5.6369 0.2599 21 6 9.5225 -4.1714 0.2081 22 6 4.0668 -2.6383 -0.0671 23 1 -0.4850 0.8401 -0.0041 24 1 3.4291 -0.8306 -2.1508 25 1 4.1742 0.5022 -1.2085 26 1 6.2245 -0.5943 -1.0525 27 1 5.6502 -1.4809 -2.4906 28 1 7.6118 -3.0370 -2.2568 29 1 8.1560 -2.1477 -0.8142 30 1 8.2448 -5.4935 -2.5307 31 1 9.9620 -7.1655 -1.6974 32 1 9.5699 -3.3674 0.9277 33 1 4.1372 -3.0690 0.9319 34 1 3.4326 -3.2569 -0.7021 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397837471.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:49 Heat of formation + Delta-G solvation = -0.442741 kcal Electronic energy + Delta-G solvation = -17411.226868 eV Core-core repulsion = 14628.735245 eV Total energy + Delta-G solvation = -2782.491623 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.81909 -38.08643 -36.68419 -33.05381 -31.56858 -30.58916 -28.73279 -27.99622 -25.07001 -23.24154 -22.30221 -19.94008 -19.24648 -18.55046 -17.59350 -17.03618 -16.73891 -15.60162 -15.41086 -14.63696 -14.36338 -14.01716 -13.23292 -13.08493 -12.93799 -12.74933 -12.71012 -12.28553 -12.19364 -12.08693 -11.65265 -11.54639 -10.98740 -10.86502 -10.79985 -10.21777 -10.01064 -9.69481 -9.52902 -9.19646 -8.83127 -8.65714 -8.41566 -8.16087 -6.16836 -4.17969 0.96900 1.61463 1.91777 2.60374 2.94880 3.19297 3.29331 3.30892 3.52875 4.32028 4.74866 4.84114 4.94528 5.12546 5.17923 5.30763 5.32030 5.43891 5.53545 5.59065 5.69071 5.92411 5.97429 6.09472 6.32320 6.39704 6.40920 6.52637 6.62917 6.70212 6.87317 7.31549 7.61341 7.96719 8.40321 8.51836 8.86300 9.43837 10.96004 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.051609 B = 0.003867 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.409336 B = 7239.352545 C = 7389.276409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.074 3.926 3 Si 0.879 3.121 4 H -0.275 1.275 5 H -0.292 1.292 6 H -0.265 1.265 7 C -0.513 4.513 8 H 0.078 0.922 9 C 0.008 3.992 10 H 0.041 0.959 11 C -0.141 4.141 12 C 0.100 3.900 13 N -0.616 5.616 14 C 0.523 3.477 15 O -0.542 6.542 16 C -0.079 4.079 17 C -0.079 4.079 18 C -0.118 4.118 19 C -0.214 4.214 20 S 0.085 5.915 21 C -0.198 4.198 22 C 0.120 3.880 23 H 0.265 0.735 24 H 0.079 0.921 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.139 0.861 31 H 0.163 0.837 32 H 0.162 0.838 33 H 0.066 0.934 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.016 -5.116 -4.414 21.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.128 4.128 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.218 1.218 6 H -0.190 1.190 7 C -0.551 4.551 8 H 0.096 0.904 9 C -0.011 4.011 10 H 0.059 0.941 11 C -0.179 4.179 12 C -0.023 4.023 13 N -0.350 5.350 14 C 0.311 3.689 15 O -0.420 6.420 16 C -0.122 4.122 17 C -0.092 4.092 18 C -0.149 4.149 19 C -0.349 4.349 20 S 0.349 5.651 21 C -0.334 4.334 22 C -0.002 4.002 23 H 0.075 0.925 24 H 0.098 0.902 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.156 0.844 31 H 0.180 0.820 32 H 0.180 0.820 33 H 0.085 0.915 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 20.959 -6.175 -3.060 22.063 hybrid contribution -0.796 1.594 -1.040 2.063 sum 20.163 -4.581 -4.100 21.079 Atomic orbital electron populations 1.69891 1.06292 1.27123 1.50090 1.24963 0.94659 0.98974 0.94213 0.86911 0.80162 0.83701 0.78474 1.20122 1.21827 1.18962 1.20814 0.87813 0.94837 1.51622 0.90431 1.20359 0.97060 0.90756 0.92935 0.94066 1.23111 0.93540 0.98841 1.02433 1.22108 0.99868 0.85627 0.94706 1.48736 1.13182 1.22600 1.50452 1.20060 0.84578 0.82711 0.81549 1.90696 1.83060 1.27377 1.40844 1.20366 0.91761 0.97723 1.02319 1.18382 0.97992 0.96798 0.96024 1.20034 0.99449 0.93679 1.01725 1.25487 1.04062 1.04598 1.00797 1.84116 1.41709 1.14079 1.25233 1.25385 1.02927 1.02289 1.02796 1.22373 0.80297 0.99729 0.97773 0.92467 0.90183 0.92014 0.92335 0.92136 0.88102 0.88240 0.84367 0.81974 0.82048 0.91537 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.47 13.96 55.43 0.77 -25.70 16 2 C 0.07 2.04 5.46 -17.82 -0.10 1.95 16 3 Si 0.88 20.41 24.70 -169.99 -4.20 16.22 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.26 -5.86 6.50 56.52 0.37 -5.49 16 7 C -0.51 -13.72 9.10 -34.44 -0.31 -14.03 16 8 H 0.08 2.27 8.03 -52.49 -0.42 1.84 16 9 C 0.01 0.19 2.40 -89.62 -0.21 -0.03 16 10 H 0.04 0.94 7.20 -51.93 -0.37 0.57 16 11 C -0.14 -2.67 5.27 -24.86 -0.13 -2.80 16 12 C 0.10 1.52 6.49 -3.04 -0.02 1.50 16 13 N -0.62 -10.85 3.33 -170.49 -0.57 -11.42 16 14 C 0.52 8.89 7.84 -10.98 -0.09 8.81 16 15 O -0.54 -11.26 16.29 5.56 0.09 -11.17 16 16 C -0.08 -0.97 5.15 -29.04 -0.15 -1.12 16 17 C -0.08 -1.01 4.29 -106.25 -0.46 -1.47 16 18 C -0.12 -1.41 9.98 -41.21 -0.41 -1.82 16 19 C -0.21 -2.29 11.23 29.04 0.33 -1.96 16 20 S 0.09 0.91 23.34 -107.50 -2.51 -1.60 16 21 C -0.20 -2.39 10.98 29.03 0.32 -2.07 16 22 C 0.12 2.46 6.35 -2.54 -0.02 2.44 16 23 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 24 H 0.08 1.56 8.03 -51.93 -0.42 1.14 16 25 H 0.06 1.15 5.46 -51.93 -0.28 0.87 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.10 1.02 8.13 -51.93 -0.42 0.59 16 29 H 0.10 1.02 8.12 -51.93 -0.42 0.60 16 30 H 0.14 1.45 8.06 -52.49 -0.42 1.02 16 31 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.16 1.71 8.06 -52.48 -0.42 1.28 16 33 H 0.07 1.42 8.04 -51.92 -0.42 1.00 16 34 H 0.07 1.41 8.02 -51.93 -0.42 0.99 16 LS Contribution 296.65 15.07 4.47 4.47 Total: -1.00 -31.34 296.65 -7.65 -38.98 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -4.46 Total: 0.81 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -1.25 Total: -10.60 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.21 Total: -37.12 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.09 Total: -11.17 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.20 Total: 16.22 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.51 Total: -1.60 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.34 -7.65 -38.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397837471.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.541 kcal (2) G-P(sol) polarization free energy of solvation -31.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds