Wall clock time and date at job start Mon Mar 30 2020 06:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.07999 * 119.99964 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00047 * 180.02562 * 7 2 1 10 10 H 1.09001 * 110.88662 * 59.29441 * 9 7 2 11 11 C 1.55169 * 111.00251 * 295.42152 * 9 7 2 12 12 C 1.54374 * 102.91612 * 206.45289 * 11 9 7 13 13 N 1.47020 * 107.28963 * 22.13559 * 12 11 9 14 14 C 1.34778 * 125.64630 * 181.05388 * 13 12 11 15 15 O 1.21281 * 119.99814 * 180.02562 * 14 13 12 16 16 C 1.50704 * 120.00198 * 0.04232 * 14 13 12 17 17 C 1.50695 * 109.46979 * 179.97438 * 16 14 13 18 18 C 1.38425 * 122.53555 * 90.00456 * 17 16 14 19 19 C 1.33390 * 114.91998 * 179.97438 * 18 17 16 20 20 S 1.75885 * 109.59344 * 0.02562 * 19 18 17 21 21 C 1.33381 * 122.54371 * 269.71024 * 17 16 14 22 22 C 1.47423 * 108.70250 * 1.09429 * 13 12 11 23 23 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 24 24 H 1.09000 * 110.71416 * 324.78346 * 11 9 7 25 25 H 1.08995 * 110.72065 * 88.06125 * 11 9 7 26 26 H 1.08992 * 109.84603 * 262.72779 * 12 11 9 27 27 H 1.09003 * 110.02453 * 141.64867 * 12 11 9 28 28 H 1.08998 * 109.47129 * 300.00219 * 16 14 13 29 29 H 1.09003 * 109.46580 * 60.00240 * 16 14 13 30 30 H 1.07999 * 122.54381 * 359.95599 * 18 17 16 31 31 H 1.07997 * 125.20254 * 180.02562 * 19 18 17 32 32 H 1.08005 * 125.20076 * 0.02575 * 21 17 16 33 33 H 1.09009 * 110.36200 * 217.02774 * 22 13 12 34 34 H 1.09003 * 110.46504 * 94.76024 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 1.4646 -2.1294 0.0099 9 6 3.5116 -1.1941 0.0064 10 1 3.8999 -0.6701 0.8797 11 6 4.0682 -0.5784 -1.3046 12 6 5.4496 -1.2534 -1.4436 13 7 5.4089 -2.4970 -0.6605 14 6 6.4294 -3.3646 -0.5107 15 8 6.2823 -4.3636 0.1611 16 6 7.7533 -3.0932 -1.1775 17 6 8.7163 -4.2062 -0.8539 18 6 8.8354 -5.3396 -1.6397 19 6 9.7347 -6.2275 -1.2128 20 16 10.4936 -5.6369 0.2599 21 6 9.5225 -4.1714 0.2081 22 6 4.0668 -2.6383 -0.0671 23 1 -0.4850 0.8401 -0.0041 24 1 3.4291 -0.8306 -2.1508 25 1 4.1742 0.5022 -1.2085 26 1 6.2245 -0.5943 -1.0525 27 1 5.6502 -1.4809 -2.4906 28 1 7.6118 -3.0370 -2.2568 29 1 8.1560 -2.1477 -0.8142 30 1 8.2448 -5.4935 -2.5307 31 1 9.9620 -7.1655 -1.6974 32 1 9.5699 -3.3674 0.9277 33 1 4.1372 -3.0690 0.9319 34 1 3.4326 -3.2569 -0.7021 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397837471.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:49 Heat of formation + Delta-G solvation = -20.573452 kcal Electronic energy + Delta-G solvation = -17412.099802 eV Core-core repulsion = 14628.735245 eV Total energy + Delta-G solvation = -2783.364556 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.11873 -39.18669 -38.03789 -34.95993 -33.01932 -31.82570 -30.17090 -29.07431 -26.79637 -24.36278 -23.58226 -21.62264 -20.52541 -19.51862 -18.89844 -18.47494 -18.09507 -16.91602 -16.66107 -16.24735 -15.74582 -15.40269 -14.83862 -14.36338 -14.09445 -13.92034 -13.89781 -13.57641 -13.48378 -13.11225 -13.07361 -12.77682 -12.56242 -12.53124 -11.95441 -11.70313 -11.62306 -11.48893 -11.15871 -10.91318 -10.71499 -9.67930 -9.57483 -9.26539 -8.28884 -6.35957 0.12189 0.79985 1.08870 1.36367 1.42162 1.51858 1.66274 1.67606 2.26222 2.36599 3.05533 3.67683 3.89592 3.93203 4.04635 4.21605 4.25359 4.38676 4.45529 4.54479 4.59504 4.66902 4.73571 4.79799 4.93164 5.12856 5.15404 5.17373 5.28965 5.48877 5.54622 5.55762 5.67521 6.26382 6.65805 6.69859 7.20014 7.30141 8.87874 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.051609 B = 0.003867 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.409336 B = 7239.352545 C = 7389.276409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.014 3.986 3 Si 0.947 3.053 4 H -0.251 1.251 5 H -0.298 1.298 6 H -0.241 1.241 7 C -0.521 4.521 8 H 0.029 0.971 9 C 0.005 3.995 10 H 0.040 0.960 11 C -0.139 4.139 12 C 0.104 3.896 13 N -0.618 5.618 14 C 0.520 3.480 15 O -0.589 6.589 16 C -0.067 4.067 17 C -0.097 4.097 18 C -0.139 4.139 19 C -0.216 4.216 20 S 0.096 5.904 21 C -0.214 4.214 22 C 0.127 3.873 23 H 0.267 0.733 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.130 0.870 29 H 0.128 0.872 30 H 0.149 0.851 31 H 0.185 0.815 32 H 0.172 0.828 33 H 0.047 0.953 34 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.343 -3.611 -5.707 24.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.183 4.183 3 Si 0.771 3.229 4 H -0.176 1.176 5 H -0.225 1.225 6 H -0.165 1.165 7 C -0.559 4.559 8 H 0.048 0.952 9 C -0.014 4.014 10 H 0.058 0.942 11 C -0.177 4.177 12 C -0.018 4.018 13 N -0.351 5.351 14 C 0.311 3.689 15 O -0.469 6.469 16 C -0.109 4.109 17 C -0.110 4.110 18 C -0.169 4.169 19 C -0.351 4.351 20 S 0.359 5.641 21 C -0.350 4.350 22 C 0.004 3.996 23 H 0.076 0.924 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.112 0.888 27 H 0.115 0.885 28 H 0.148 0.852 29 H 0.146 0.854 30 H 0.166 0.834 31 H 0.202 0.798 32 H 0.189 0.811 33 H 0.066 0.934 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 24.326 -4.673 -4.377 25.155 hybrid contribution -1.889 0.963 -0.584 2.200 sum 22.437 -3.710 -4.961 23.277 Atomic orbital electron populations 1.70062 1.08534 1.28303 1.52116 1.25920 0.95423 1.03341 0.93659 0.85823 0.79321 0.77829 0.79900 1.17553 1.22548 1.16486 1.21057 0.90590 0.93163 1.51113 0.95244 1.20216 0.93915 0.92249 0.95035 0.94185 1.22976 0.95580 0.99675 0.99441 1.22271 0.98184 0.84568 0.96739 1.48785 1.11877 1.23872 1.50603 1.20990 0.85666 0.81548 0.80725 1.90677 1.83956 1.29359 1.42952 1.20400 0.88310 0.98733 1.03458 1.18590 0.98430 0.97446 0.96545 1.20269 1.00198 0.93949 1.02464 1.25852 1.03435 1.05247 1.00568 1.84071 1.41250 1.13505 1.25235 1.25673 1.03225 1.03137 1.02951 1.21991 0.82383 0.98467 0.96798 0.92397 0.91234 0.90800 0.88764 0.88487 0.85247 0.85450 0.83383 0.79758 0.81075 0.93393 0.93404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.16 13.96 21.45 0.30 -57.86 16 2 C 0.01 0.78 5.46 84.66 0.46 1.24 16 3 Si 0.95 41.19 24.70 68.60 1.69 42.89 16 4 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 5 H -0.30 -13.25 7.11 99.48 0.71 -12.55 16 6 H -0.24 -9.51 6.50 99.48 0.65 -8.87 16 7 C -0.52 -28.90 9.10 25.60 0.23 -28.67 16 8 H 0.03 1.85 8.03 -2.91 -0.02 1.82 16 9 C 0.01 0.24 2.40 -10.15 -0.02 0.21 16 10 H 0.04 1.78 7.20 -2.39 -0.02 1.76 16 11 C -0.14 -4.84 5.27 31.80 0.17 -4.67 16 12 C 0.10 2.68 6.49 86.75 0.56 3.24 16 13 N -0.62 -20.37 3.33 -811.71 -2.70 -23.07 16 14 C 0.52 16.55 7.84 87.66 0.69 17.23 16 15 O -0.59 -24.24 16.29 -3.03 -0.05 -24.29 16 16 C -0.07 -1.38 5.15 29.10 0.15 -1.23 16 17 C -0.10 -2.22 4.29 -20.92 -0.09 -2.31 16 18 C -0.14 -2.99 9.98 21.22 0.21 -2.78 16 19 C -0.22 -4.15 11.23 66.72 0.75 -3.41 16 20 S 0.10 1.88 23.34 -56.49 -1.32 0.56 16 21 C -0.21 -4.71 10.98 66.72 0.73 -3.98 16 22 C 0.13 5.28 6.35 86.85 0.55 5.83 16 23 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 24 H 0.07 2.56 8.03 -2.39 -0.02 2.54 16 25 H 0.07 2.41 5.46 -2.39 -0.01 2.40 16 26 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.13 1.94 8.13 -2.39 -0.02 1.92 16 29 H 0.13 1.93 8.12 -2.39 -0.02 1.91 16 30 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 31 H 0.19 2.53 8.06 -2.91 -0.02 2.51 16 32 H 0.17 3.24 8.06 -2.91 -0.02 3.22 16 33 H 0.05 2.13 8.04 -2.38 -0.02 2.11 16 34 H 0.05 2.13 8.02 -2.39 -0.02 2.11 16 Total: -1.00 -71.83 296.65 3.35 -68.48 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 1.03 Total: 12.58 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: 4.39 Total: -19.29 kcal Atomic # 7 Polarization: -78.52 SS G_CDS: -2.40 Total: -80.92 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.05 Total: -24.29 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 1.69 Total: 42.89 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -1.32 Total: 0.56 kcal Total: -71.83 3.35 -68.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397837471.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.905 kcal (2) G-P(sol) polarization free energy of solvation -71.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds