Wall clock time and date at job start Mon Mar 30 2020 06:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00006 * 2 1 4 4 H 1.48502 * 109.46882 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47168 * 119.99690 * 3 2 1 6 6 H 1.48498 * 109.46903 * 239.99855 * 3 2 1 7 7 C 1.37884 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99646 * 186.16589 * 7 2 1 9 9 C 1.50693 * 119.99869 * 6.16600 * 7 2 1 10 10 H 1.09001 * 109.47661 * 30.49558 * 9 7 2 11 11 S 1.81400 * 109.47174 * 150.49510 * 9 7 2 12 12 C 1.81402 * 102.99825 * 295.00145 * 11 9 7 13 13 C 1.53006 * 109.46704 * 179.97438 * 12 11 9 14 14 C 1.50700 * 109.46573 * 179.97438 * 13 12 11 15 15 N 1.34783 * 119.99781 * 180.02562 * 14 13 12 16 16 O 1.21281 * 120.00407 * 359.97438 * 14 13 12 17 17 C 1.50703 * 109.47439 * 270.49809 * 9 7 2 18 18 C 1.38237 * 119.99568 * 300.43734 * 17 9 7 19 19 C 1.38234 * 120.00001 * 179.78983 * 18 17 9 20 20 C 1.38244 * 119.99641 * 0.43739 * 19 18 17 21 21 C 1.38235 * 120.00087 * 359.80985 * 20 19 18 22 22 C 1.38233 * 120.00342 * 120.70781 * 17 9 7 23 23 H 0.97002 * 120.00222 * 175.21753 * 1 2 3 24 24 H 1.08999 * 109.47117 * 299.99765 * 12 11 9 25 25 H 1.09000 * 109.47228 * 60.00426 * 12 11 9 26 26 H 1.08999 * 109.47434 * 299.99928 * 13 12 11 27 27 H 1.09000 * 109.47119 * 60.00647 * 13 12 11 28 28 H 0.97000 * 119.99643 * 0.02562 * 15 14 13 29 29 H 0.96995 * 119.99941 * 179.97438 * 15 14 13 30 30 H 1.07999 * 120.00229 * 359.97438 * 18 17 9 31 31 H 1.07998 * 120.00240 * 180.27056 * 19 18 17 32 32 H 1.07995 * 119.99648 * 179.83954 * 20 19 18 33 33 H 1.07997 * 119.99930 * 180.02562 * 21 20 19 34 34 H 1.08001 * 119.99588 * 359.97438 * 22 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6964 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0798 -1.1967 0.1010 9 6 1.2576 -2.4954 -0.1391 10 1 0.3613 -2.3375 -0.7390 11 16 2.3215 -3.7191 -0.9522 12 6 2.5569 -3.0184 -2.6088 13 6 3.4487 -3.9485 -3.4339 14 6 3.6437 -3.3667 -4.8103 15 7 4.3987 -4.0186 -5.7167 16 8 3.1206 -2.3123 -5.1028 17 6 0.8657 -2.9988 1.2263 18 6 1.8396 -3.2637 2.1709 19 6 1.4800 -3.7213 3.4248 20 6 0.1470 -3.9225 3.7310 21 6 -0.8265 -3.6624 2.7847 22 6 -0.4671 -3.2008 1.5323 23 1 -0.4850 -0.8371 -0.0700 24 1 1.5893 -2.9126 -3.0994 25 1 3.0311 -2.0405 -2.5257 26 1 4.4163 -4.0539 -2.9431 27 1 2.9750 -4.9266 -3.5171 28 1 4.8162 -4.8624 -5.4832 29 1 4.5240 -3.6443 -6.6028 30 1 2.8812 -3.1104 1.9303 31 1 2.2405 -3.9242 4.1642 32 1 -0.1338 -4.2824 4.7098 33 1 -1.8679 -3.8192 3.0241 34 1 -1.2276 -2.9975 0.7929 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399295524.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:29 Heat of formation + Delta-G solvation = -37.336447 kcal Electronic energy + Delta-G solvation = -17183.613500 eV Core-core repulsion = 14399.522046 eV Total energy + Delta-G solvation = -2784.091454 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.35214 -38.44850 -34.06343 -33.66922 -32.34094 -30.91309 -30.15143 -26.97822 -24.40695 -23.40596 -21.74351 -20.65921 -20.13330 -17.33125 -17.10404 -16.83292 -16.07621 -15.52223 -15.05525 -14.58761 -14.22061 -13.84822 -13.60896 -13.39108 -12.92886 -12.68202 -12.51573 -12.41843 -11.88979 -11.44503 -11.10097 -10.88001 -10.81230 -10.35556 -10.29729 -10.17273 -9.83609 -9.71847 -9.17854 -8.98311 -8.58736 -8.17114 -7.73632 -6.89253 -6.40487 -4.28070 2.01736 2.16312 2.71174 2.75568 3.37525 3.40908 3.57872 3.69065 3.69449 4.40040 4.69702 4.94909 5.18570 5.26406 5.28183 5.56331 5.60519 5.73495 5.74359 5.99242 6.15867 6.27894 6.33601 6.53671 6.55304 6.74925 6.75300 6.86233 7.17911 7.23594 7.28638 7.52164 7.70480 7.84172 8.23803 8.29297 8.61224 9.38633 10.80822 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.015576 B = 0.006688 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.216493 B = 4185.767387 C = 5455.531558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.031 3.969 3 Si 1.067 2.933 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.583 4.583 8 H 0.066 0.934 9 C 0.124 3.876 10 H 0.056 0.944 11 S -0.327 6.327 12 C -0.052 4.052 13 C -0.123 4.123 14 C 0.519 3.481 15 N -0.861 5.861 16 O -0.536 6.536 17 C -0.021 4.021 18 C -0.096 4.096 19 C -0.129 4.129 20 C -0.146 4.146 21 C -0.124 4.124 22 C -0.119 4.119 23 H 0.272 0.728 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.400 0.600 29 H 0.398 0.602 30 H 0.120 0.880 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.733 -9.809 -3.250 11.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.178 4.178 3 Si 0.894 3.106 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.623 4.623 8 H 0.084 0.916 9 C -0.003 4.003 10 H 0.074 0.926 11 S -0.095 6.095 12 C -0.201 4.201 13 C -0.164 4.164 14 C 0.302 3.698 15 N -0.425 5.425 16 O -0.411 6.411 17 C -0.024 4.024 18 C -0.115 4.115 19 C -0.148 4.148 20 C -0.164 4.164 21 C -0.143 4.143 22 C -0.139 4.139 23 H 0.084 0.916 24 H 0.094 0.906 25 H 0.111 0.889 26 H 0.118 0.882 27 H 0.115 0.885 28 H 0.228 0.772 29 H 0.228 0.772 30 H 0.138 0.862 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.519 -8.456 -2.828 10.486 hybrid contribution -0.029 -0.772 -0.729 1.062 sum 5.491 -9.227 -3.556 11.311 Atomic orbital electron populations 1.70810 1.06899 1.31372 1.43286 1.25962 0.96381 1.02726 0.92758 0.83559 0.75112 0.75055 0.76903 1.20551 1.21101 1.20982 1.22000 0.95137 0.89681 1.55488 0.91611 1.19830 0.95746 0.93817 0.90882 0.92619 1.85923 1.71498 1.38436 1.13603 1.22717 1.02167 1.01424 0.93765 1.21413 1.02609 1.00523 0.91842 1.20799 0.77406 0.84468 0.87108 1.43900 1.54609 1.27225 1.16814 1.90784 1.47840 1.22489 1.80002 1.20092 0.92614 0.92871 0.96808 1.20939 0.99748 0.98181 0.92660 1.21012 0.95805 1.01228 0.96707 1.20872 0.93350 1.03388 0.98829 1.20931 0.98514 1.00852 0.93975 1.20958 0.95843 1.00305 0.96801 0.91640 0.90563 0.88925 0.88235 0.88501 0.77192 0.77161 0.86225 0.87157 0.87321 0.87147 0.87017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.74 13.63 55.43 0.76 -24.99 16 2 C 0.03 0.84 5.45 -17.82 -0.10 0.74 16 3 Si 1.07 24.82 29.91 -169.99 -5.08 19.73 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.58 -15.49 7.56 -34.44 -0.26 -15.75 16 8 H 0.07 1.77 7.82 -52.49 -0.41 1.36 16 9 C 0.12 3.02 2.10 -29.04 -0.06 2.96 16 10 H 0.06 1.46 6.46 -51.92 -0.34 1.13 16 11 S -0.33 -6.86 20.76 -107.50 -2.23 -9.09 16 12 C -0.05 -1.00 5.02 37.16 0.19 -0.82 16 13 C -0.12 -1.71 5.71 -27.88 -0.16 -1.87 16 14 C 0.52 7.37 8.10 -10.98 -0.09 7.28 16 15 N -0.86 -7.73 8.87 31.22 0.28 -7.46 16 16 O -0.54 -10.36 16.82 5.56 0.09 -10.27 16 17 C -0.02 -0.48 4.76 -104.62 -0.50 -0.98 16 18 C -0.10 -2.06 8.89 -39.58 -0.35 -2.41 16 19 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 20 C -0.15 -2.56 10.05 -39.58 -0.40 -2.95 16 21 C -0.12 -2.30 10.05 -39.58 -0.40 -2.70 16 22 C -0.12 -2.54 9.48 -39.59 -0.38 -2.91 16 23 H 0.27 7.76 6.48 -40.82 -0.26 7.50 16 24 H 0.08 1.56 8.10 -51.92 -0.42 1.14 16 25 H 0.09 2.02 7.96 -51.92 -0.41 1.61 16 26 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 27 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.40 2.24 8.83 -40.82 -0.36 1.88 16 29 H 0.40 3.15 8.93 -40.82 -0.36 2.79 16 30 H 0.12 2.58 8.05 -52.49 -0.42 2.16 16 31 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 32 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 34 H 0.11 2.32 7.95 -52.49 -0.42 1.91 16 LS Contribution 309.53 15.07 4.66 4.66 Total: -1.00 -32.25 309.53 -8.74 -40.99 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -4.32 Total: 8.62 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -2.90 Total: -22.20 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 1.03 Total: -32.45 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.08 Total: 19.73 kcal Atomic # 16 Polarization: -6.86 SS G_CDS: -2.23 Total: -9.09 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.25 -8.74 -40.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399295524.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.656 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds