Wall clock time and date at job start Mon Mar 30 2020 06:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00006 * 2 1 4 4 H 1.48502 * 109.46882 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47168 * 119.99690 * 3 2 1 6 6 H 1.48498 * 109.46903 * 239.99855 * 3 2 1 7 7 C 1.37884 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99646 * 186.16589 * 7 2 1 9 9 C 1.50693 * 119.99869 * 6.16600 * 7 2 1 10 10 H 1.09001 * 109.47661 * 30.49558 * 9 7 2 11 11 S 1.81400 * 109.47174 * 150.49510 * 9 7 2 12 12 C 1.81402 * 102.99825 * 295.00145 * 11 9 7 13 13 C 1.53006 * 109.46704 * 179.97438 * 12 11 9 14 14 C 1.50700 * 109.46573 * 179.97438 * 13 12 11 15 15 N 1.34783 * 119.99781 * 180.02562 * 14 13 12 16 16 O 1.21281 * 120.00407 * 359.97438 * 14 13 12 17 17 C 1.50703 * 109.47439 * 270.49809 * 9 7 2 18 18 C 1.38237 * 119.99568 * 300.43734 * 17 9 7 19 19 C 1.38234 * 120.00001 * 179.78983 * 18 17 9 20 20 C 1.38244 * 119.99641 * 0.43739 * 19 18 17 21 21 C 1.38235 * 120.00087 * 359.80985 * 20 19 18 22 22 C 1.38233 * 120.00342 * 120.70781 * 17 9 7 23 23 H 0.97002 * 120.00222 * 175.21753 * 1 2 3 24 24 H 1.08999 * 109.47117 * 299.99765 * 12 11 9 25 25 H 1.09000 * 109.47228 * 60.00426 * 12 11 9 26 26 H 1.08999 * 109.47434 * 299.99928 * 13 12 11 27 27 H 1.09000 * 109.47119 * 60.00647 * 13 12 11 28 28 H 0.97000 * 119.99643 * 0.02562 * 15 14 13 29 29 H 0.96995 * 119.99941 * 179.97438 * 15 14 13 30 30 H 1.07999 * 120.00229 * 359.97438 * 18 17 9 31 31 H 1.07998 * 120.00240 * 180.27056 * 19 18 17 32 32 H 1.07995 * 119.99648 * 179.83954 * 20 19 18 33 33 H 1.07997 * 119.99930 * 180.02562 * 21 20 19 34 34 H 1.08001 * 119.99588 * 359.97438 * 22 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6964 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0798 -1.1967 0.1010 9 6 1.2576 -2.4954 -0.1391 10 1 0.3613 -2.3375 -0.7390 11 16 2.3215 -3.7191 -0.9522 12 6 2.5569 -3.0184 -2.6088 13 6 3.4487 -3.9485 -3.4339 14 6 3.6437 -3.3667 -4.8103 15 7 4.3987 -4.0186 -5.7167 16 8 3.1206 -2.3123 -5.1028 17 6 0.8657 -2.9988 1.2263 18 6 1.8396 -3.2637 2.1709 19 6 1.4800 -3.7213 3.4248 20 6 0.1470 -3.9225 3.7310 21 6 -0.8265 -3.6624 2.7847 22 6 -0.4671 -3.2008 1.5323 23 1 -0.4850 -0.8371 -0.0700 24 1 1.5893 -2.9126 -3.0994 25 1 3.0311 -2.0405 -2.5257 26 1 4.4163 -4.0539 -2.9431 27 1 2.9750 -4.9266 -3.5171 28 1 4.8162 -4.8624 -5.4832 29 1 4.5240 -3.6443 -6.6028 30 1 2.8812 -3.1104 1.9303 31 1 2.2405 -3.9242 4.1642 32 1 -0.1338 -4.2824 4.7098 33 1 -1.8679 -3.8192 3.0241 34 1 -1.2276 -2.9975 0.7929 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399295524.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:29 Heat of formation + Delta-G solvation = -58.714548 kcal Electronic energy + Delta-G solvation = -17184.540524 eV Core-core repulsion = 14399.522046 eV Total energy + Delta-G solvation = -2785.018479 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.54110 -40.01769 -35.99014 -34.75178 -33.65084 -32.69217 -31.68450 -28.80136 -25.80604 -25.33665 -23.29813 -22.20681 -21.35156 -19.12597 -18.31928 -18.03288 -17.52895 -16.91321 -16.63859 -16.19964 -15.73007 -15.68805 -15.08883 -14.96003 -14.54285 -14.33773 -14.10295 -13.98602 -13.37296 -13.07331 -12.70283 -12.61392 -12.42846 -12.01986 -11.90044 -11.88017 -11.17643 -11.10519 -10.78059 -10.69411 -10.62305 -9.71249 -9.37513 -8.86758 -8.32440 -6.42367 0.43581 0.61296 1.15659 1.47305 1.54559 1.58214 1.72808 1.89147 2.48540 2.68512 3.08371 3.14260 3.69664 3.94733 4.06857 4.17393 4.19209 4.28290 4.36802 4.55014 4.55252 4.72331 4.79471 4.85702 4.96067 5.19204 5.27819 5.65006 5.68393 5.69760 5.88294 5.95447 6.08744 6.25091 6.43004 6.46624 7.31250 7.33207 8.66779 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.015576 B = 0.006688 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.216493 B = 4185.767387 C = 5455.531558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.017 4.017 3 Si 1.106 2.894 4 H -0.283 1.283 5 H -0.267 1.267 6 H -0.276 1.276 7 C -0.586 4.586 8 H 0.056 0.944 9 C 0.118 3.882 10 H 0.021 0.979 11 S -0.296 6.296 12 C -0.049 4.049 13 C -0.112 4.112 14 C 0.520 3.480 15 N -0.830 5.830 16 O -0.597 6.597 17 C -0.049 4.049 18 C -0.116 4.116 19 C -0.124 4.124 20 C -0.135 4.135 21 C -0.122 4.122 22 C -0.143 4.143 23 H 0.261 0.739 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.123 0.877 27 H 0.125 0.875 28 H 0.421 0.579 29 H 0.408 0.592 30 H 0.109 0.891 31 H 0.146 0.854 32 H 0.153 0.847 33 H 0.142 0.858 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.081 -11.746 -2.021 13.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.928 3.072 4 H -0.208 1.208 5 H -0.192 1.192 6 H -0.201 1.201 7 C -0.626 4.626 8 H 0.075 0.925 9 C -0.010 4.010 10 H 0.040 0.960 11 S -0.064 6.064 12 C -0.198 4.198 13 C -0.153 4.153 14 C 0.304 3.696 15 N -0.395 5.395 16 O -0.477 6.477 17 C -0.052 4.052 18 C -0.136 4.136 19 C -0.142 4.142 20 C -0.153 4.153 21 C -0.140 4.140 22 C -0.162 4.162 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.141 0.859 27 H 0.143 0.857 28 H 0.253 0.747 29 H 0.240 0.760 30 H 0.127 0.873 31 H 0.163 0.837 32 H 0.171 0.829 33 H 0.160 0.840 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.919 -10.461 -1.610 12.645 hybrid contribution -0.421 -0.349 -1.117 1.244 sum 6.498 -10.810 -2.728 12.904 Atomic orbital electron populations 1.70894 1.07722 1.30778 1.46328 1.27146 0.96528 1.05896 0.92384 0.83070 0.74419 0.71878 0.77882 1.20823 1.19161 1.20110 1.22128 0.94679 0.90941 1.54824 0.92531 1.19725 0.94746 0.94379 0.92144 0.96043 1.85587 1.70252 1.36514 1.14024 1.22723 1.02056 1.01444 0.93614 1.21363 1.02705 1.00080 0.91161 1.20770 0.77414 0.83796 0.87653 1.43591 1.52366 1.27302 1.16202 1.90775 1.50716 1.25228 1.81002 1.20028 0.93862 0.95145 0.96165 1.20978 0.98883 0.99723 0.93992 1.21413 0.97449 0.99438 0.95911 1.21385 0.92474 1.01294 1.00197 1.21321 1.00677 0.99311 0.92729 1.21066 0.95097 1.01760 0.98322 0.92764 0.92690 0.92075 0.85890 0.85705 0.74700 0.75987 0.87274 0.83662 0.82902 0.84011 0.88226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.88 13.63 21.45 0.29 -55.59 16 2 C -0.02 -0.99 5.45 84.66 0.46 -0.52 16 3 Si 1.11 51.28 29.91 68.60 2.05 53.33 16 4 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 5 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 6 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.59 -32.48 7.56 25.60 0.19 -32.29 16 8 H 0.06 3.16 7.82 -2.91 -0.02 3.13 16 9 C 0.12 6.01 2.10 29.10 0.06 6.07 16 10 H 0.02 1.21 6.46 -2.39 -0.02 1.20 16 11 S -0.30 -12.64 20.76 -56.49 -1.17 -13.81 16 12 C -0.05 -1.96 5.02 71.98 0.36 -1.60 16 13 C -0.11 -2.98 5.71 29.85 0.17 -2.81 16 14 C 0.52 14.27 8.10 87.66 0.71 14.98 16 15 N -0.83 -12.80 8.87 -173.52 -1.54 -14.34 16 16 O -0.60 -23.60 16.82 -3.03 -0.05 -23.65 16 17 C -0.05 -2.31 4.76 -19.86 -0.09 -2.41 16 18 C -0.12 -4.94 8.89 22.27 0.20 -4.74 16 19 C -0.12 -4.24 10.05 22.27 0.22 -4.02 16 20 C -0.14 -4.23 10.05 22.27 0.22 -4.00 16 21 C -0.12 -4.28 10.05 22.27 0.22 -4.05 16 22 C -0.14 -6.18 9.48 22.27 0.21 -5.97 16 23 H 0.26 15.93 6.48 -92.71 -0.60 15.33 16 24 H 0.05 2.38 8.10 -2.39 -0.02 2.36 16 25 H 0.06 2.80 7.96 -2.39 -0.02 2.78 16 26 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 27 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 28 H 0.42 3.18 8.83 -92.71 -0.82 2.36 16 29 H 0.41 5.49 8.93 -92.71 -0.83 4.66 16 30 H 0.11 4.74 8.05 -2.91 -0.02 4.71 16 31 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 32 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 33 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 34 H 0.10 4.41 7.95 -2.91 -0.02 4.38 16 Total: -1.00 -74.78 309.53 2.16 -72.62 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: -0.36 Total: 22.81 kcal Atomic # 6 Polarization: -44.31 SS G_CDS: 2.94 Total: -41.37 kcal Atomic # 7 Polarization: -68.68 SS G_CDS: -1.25 Total: -69.93 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.05 Total: -23.65 kcal Atomic # 14 Polarization: 51.28 SS G_CDS: 2.05 Total: 53.33 kcal Atomic # 16 Polarization: -12.64 SS G_CDS: -1.17 Total: -13.81 kcal Total: -74.78 2.16 -72.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399295524.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.905 kcal (2) G-P(sol) polarization free energy of solvation -74.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds