Wall clock time and date at job start Mon Mar 30 2020 06:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 120.00411 * 2 1 4 4 H 1.48494 * 109.46975 * 239.99723 * 3 2 1 5 5 H 1.48504 * 109.46849 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46953 * 119.99621 * 3 2 1 7 7 C 1.37880 * 119.99572 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99916 * 186.76999 * 7 2 1 9 9 C 1.50695 * 120.00224 * 6.76849 * 7 2 1 10 10 H 1.08997 * 109.47029 * 329.21053 * 9 7 2 11 11 S 1.81405 * 109.47148 * 209.21289 * 9 7 2 12 12 C 1.81396 * 102.99918 * 65.00124 * 11 9 7 13 13 C 1.53005 * 109.47046 * 179.97438 * 12 11 9 14 14 C 1.50704 * 109.46941 * 179.97438 * 13 12 11 15 15 N 1.34777 * 119.99613 * 179.97438 * 14 13 12 16 16 O 1.21277 * 119.99979 * 0.02562 * 14 13 12 17 17 C 1.50700 * 109.47125 * 89.21519 * 9 7 2 18 18 C 1.38229 * 120.00309 * 61.11612 * 17 9 7 19 19 C 1.38239 * 120.00225 * 179.81100 * 18 17 9 20 20 C 1.38230 * 119.99880 * 0.39623 * 19 18 17 21 21 C 1.38241 * 120.00003 * 359.85962 * 20 19 18 22 22 C 1.38233 * 119.99895 * 359.95109 * 21 20 19 23 23 H 0.97000 * 120.00181 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47114 * 299.99570 * 12 11 9 25 25 H 1.08995 * 109.47460 * 60.00067 * 12 11 9 26 26 H 1.08990 * 109.47035 * 300.00197 * 13 12 11 27 27 H 1.09007 * 109.47138 * 60.00015 * 13 12 11 28 28 H 0.97004 * 120.00368 * 0.02562 * 15 14 13 29 29 H 0.97002 * 119.99701 * 179.97438 * 15 14 13 30 30 H 1.08003 * 119.99877 * 359.97438 * 18 17 9 31 31 H 1.07994 * 119.99849 * 180.22887 * 19 18 17 32 32 H 1.07996 * 120.00345 * 179.83354 * 20 19 18 33 33 H 1.07994 * 120.00055 * 179.97438 * 21 20 19 34 34 H 1.08000 * 120.00135 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6962 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0788 -1.1974 0.1108 9 6 1.2587 -2.4947 -0.1527 10 1 0.2634 -2.3960 0.2805 11 16 2.1626 -3.8144 0.7031 12 6 2.0720 -3.3091 2.4429 13 6 2.8003 -4.3371 3.3111 14 6 2.7256 -3.9169 4.7564 15 7 3.3015 -4.6763 5.7095 16 8 2.1465 -2.8961 5.0620 17 6 1.1384 -2.8354 -1.6157 18 6 2.2763 -3.0336 -2.3752 19 6 2.1658 -3.3499 -3.7163 20 6 0.9176 -3.4600 -4.2999 21 6 -0.2203 -3.2566 -3.5417 22 6 -0.1099 -2.9441 -2.1997 23 1 -0.4850 0.8400 0.0004 24 1 2.5426 -2.3332 2.5628 25 1 1.0280 -3.2492 2.7500 26 1 2.3294 -5.3127 3.1911 27 1 3.8445 -4.3974 3.0041 28 1 3.7644 -5.4930 5.4651 29 1 3.2538 -4.4056 6.6398 30 1 3.2516 -2.9438 -1.9201 31 1 3.0547 -3.5084 -4.3087 32 1 0.8312 -3.7045 -5.3483 33 1 -1.1955 -3.3422 -3.9977 34 1 -0.9988 -2.7856 -1.6072 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399295530.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:30 Heat of formation + Delta-G solvation = -55.226864 kcal Electronic energy + Delta-G solvation = -17132.122892 eV Core-core repulsion = 14347.255650 eV Total energy + Delta-G solvation = -2784.867241 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.50163 -39.86815 -35.59814 -34.71620 -33.58291 -32.86785 -31.57151 -29.04273 -25.77743 -25.27712 -23.22272 -22.04353 -21.27879 -18.62364 -18.27723 -17.96772 -17.43098 -17.00567 -16.68424 -16.21847 -15.84687 -15.54695 -15.07005 -14.71206 -14.42287 -14.14930 -13.88787 -13.66705 -13.49264 -13.09836 -12.87097 -12.65896 -12.36501 -12.16941 -12.03025 -11.77557 -11.44361 -11.04977 -10.70271 -10.66239 -10.59533 -9.60868 -9.28711 -8.55849 -8.10344 -6.35390 0.55937 0.71316 1.25960 1.36041 1.37350 1.44278 1.62176 2.01659 2.35726 2.72932 3.07305 3.22515 3.76582 4.02778 4.21609 4.24612 4.28505 4.39292 4.49897 4.62172 4.79147 4.82338 4.92299 5.04896 5.05473 5.31709 5.40103 5.59743 5.76640 5.79706 5.90437 5.91251 6.13013 6.35759 6.46524 6.69601 7.27315 7.36702 8.79690 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.015527 B = 0.006634 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.851561 B = 4219.673500 C = 5469.119826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.027 3.973 3 Si 0.951 3.049 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.517 4.517 8 H 0.062 0.938 9 C 0.131 3.869 10 H 0.038 0.962 11 S -0.309 6.309 12 C -0.046 4.046 13 C -0.112 4.112 14 C 0.519 3.481 15 N -0.831 5.831 16 O -0.597 6.597 17 C -0.042 4.042 18 C -0.119 4.119 19 C -0.127 4.127 20 C -0.137 4.137 21 C -0.126 4.126 22 C -0.133 4.133 23 H 0.266 0.734 24 H 0.059 0.941 25 H 0.053 0.947 26 H 0.125 0.875 27 H 0.123 0.877 28 H 0.421 0.579 29 H 0.408 0.592 30 H 0.111 0.889 31 H 0.144 0.856 32 H 0.150 0.850 33 H 0.139 0.861 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.116 -11.373 1.204 12.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.176 4.176 3 Si 0.776 3.224 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.080 0.920 9 C 0.003 3.997 10 H 0.057 0.943 11 S -0.076 6.076 12 C -0.195 4.195 13 C -0.153 4.153 14 C 0.303 3.697 15 N -0.395 5.395 16 O -0.478 6.478 17 C -0.045 4.045 18 C -0.139 4.139 19 C -0.144 4.144 20 C -0.156 4.156 21 C -0.144 4.144 22 C -0.153 4.153 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.143 0.857 27 H 0.141 0.859 28 H 0.253 0.747 29 H 0.239 0.761 30 H 0.129 0.871 31 H 0.162 0.838 32 H 0.168 0.832 33 H 0.157 0.843 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.061 -11.551 0.837 13.071 hybrid contribution -0.413 2.163 1.114 2.467 sum 5.648 -9.388 1.950 11.128 Atomic orbital electron populations 1.70006 1.07283 1.27963 1.49295 1.25744 0.95640 1.02409 0.93832 0.85698 0.78660 0.78978 0.79048 1.19056 1.20699 1.19751 1.21282 0.93584 0.90094 1.50739 0.92002 1.19678 0.96792 0.92351 0.90853 0.94336 1.85571 1.77707 1.39107 1.05205 1.22676 1.02476 1.01484 0.92900 1.21374 1.04390 1.00161 0.89394 1.20810 0.77002 0.82748 0.89110 1.43599 1.57859 1.28105 1.09972 1.90772 1.45305 1.27598 1.84093 1.19995 0.93721 0.95028 0.95765 1.21020 0.97806 1.00304 0.94750 1.21379 0.98784 1.00119 0.94162 1.21343 0.91910 1.01610 1.00701 1.21308 0.99889 1.00133 0.93079 1.21051 0.96472 1.01457 0.96318 0.92518 0.92228 0.92764 0.85726 0.85922 0.74710 0.76058 0.87071 0.83836 0.83184 0.84317 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.08 12.85 21.45 0.28 -52.80 16 2 C 0.03 1.49 5.45 84.66 0.46 1.95 16 3 Si 0.95 44.52 29.54 68.60 2.03 46.55 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 6 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 7 C -0.52 -28.43 7.60 25.60 0.19 -28.23 16 8 H 0.06 3.40 7.82 -2.91 -0.02 3.38 16 9 C 0.13 6.70 2.48 29.10 0.07 6.77 16 10 H 0.04 2.24 7.12 -2.39 -0.02 2.22 16 11 S -0.31 -13.19 20.70 -56.49 -1.17 -14.36 16 12 C -0.05 -1.86 5.02 71.98 0.36 -1.50 16 13 C -0.11 -3.03 5.71 29.85 0.17 -2.86 16 14 C 0.52 14.49 8.10 87.66 0.71 15.20 16 15 N -0.83 -13.14 8.87 -173.53 -1.54 -14.68 16 16 O -0.60 -23.94 16.82 -3.02 -0.05 -23.99 16 17 C -0.04 -1.99 4.77 -19.87 -0.09 -2.08 16 18 C -0.12 -5.01 8.88 22.27 0.20 -4.81 16 19 C -0.13 -4.29 10.05 22.27 0.22 -4.07 16 20 C -0.14 -4.30 10.05 22.27 0.22 -4.07 16 21 C -0.13 -4.44 10.05 22.27 0.22 -4.22 16 22 C -0.13 -5.85 9.67 22.27 0.22 -5.63 16 23 H 0.27 14.85 8.31 -92.71 -0.77 14.07 16 24 H 0.06 2.75 7.95 -2.39 -0.02 2.74 16 25 H 0.05 2.40 8.10 -2.39 -0.02 2.38 16 26 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 27 H 0.12 2.76 8.14 -2.38 -0.02 2.74 16 28 H 0.42 3.33 8.83 -92.71 -0.82 2.52 16 29 H 0.41 5.65 8.93 -92.71 -0.83 4.82 16 30 H 0.11 4.71 8.04 -2.91 -0.02 4.69 16 31 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 32 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 33 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 34 H 0.10 4.52 7.95 -2.91 -0.02 4.50 16 Total: -1.00 -72.31 311.43 1.97 -70.34 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -0.53 Total: 22.49 kcal Atomic # 6 Polarization: -36.50 SS G_CDS: 2.96 Total: -33.54 kcal Atomic # 7 Polarization: -66.22 SS G_CDS: -1.26 Total: -67.49 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.05 Total: -23.99 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 16 Polarization: -13.19 SS G_CDS: -1.17 Total: -14.36 kcal Total: -72.31 1.97 -70.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399295530.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.111 kcal (2) G-P(sol) polarization free energy of solvation -72.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds