Wall clock time and date at job start Mon Mar 30 2020 06:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86795 * 119.99987 * 2 1 4 4 H 1.48507 * 109.47268 * 239.99886 * 3 2 1 5 5 H 1.48501 * 109.47476 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47191 * 120.00012 * 3 2 1 7 7 C 1.40041 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99833 * 180.02562 * 7 2 1 9 9 C 1.46379 * 120.00333 * 359.97438 * 7 2 1 10 10 O 1.21687 * 119.99496 * 0.02562 * 9 7 2 11 11 N 1.34771 * 120.00340 * 179.97438 * 9 7 2 12 12 C 1.46496 * 120.00054 * 180.02562 * 11 9 7 13 13 C 1.50700 * 109.47206 * 180.02562 * 12 11 9 14 14 C 1.32917 * 122.14971 * 259.97754 * 13 12 11 15 15 S 1.75731 * 109.58339 * 180.29372 * 14 13 12 16 16 C 1.75830 * 91.07999 * 359.65277 * 15 14 13 17 17 C 1.34633 * 109.96652 * 0.34313 * 16 15 14 18 18 C 1.52282 * 122.82774 * 179.74124 * 17 16 15 19 19 C 1.52969 * 108.80239 * 342.53649 * 18 17 16 20 20 C 1.53155 * 109.31289 * 51.16165 * 19 18 17 21 21 C 1.51406 * 125.24454 * 180.02562 * 16 15 14 22 22 H 0.96997 * 119.99972 * 0.02562 * 1 2 3 23 23 H 0.97001 * 120.00035 * 0.02562 * 11 9 7 24 24 H 1.08998 * 109.47179 * 60.00278 * 12 11 9 25 25 H 1.09004 * 109.47565 * 299.99999 * 12 11 9 26 26 H 1.08002 * 125.20345 * 0.02562 * 14 13 12 27 27 H 1.09004 * 109.57607 * 102.32236 * 18 17 16 28 28 H 1.08997 * 109.58279 * 222.72942 * 18 17 16 29 29 H 1.08998 * 109.49593 * 291.21509 * 19 18 17 30 30 H 1.08998 * 109.50073 * 171.11543 * 19 18 17 31 31 H 1.08997 * 109.55974 * 169.59940 * 20 19 18 32 32 H 1.09006 * 109.55279 * 49.29338 * 20 19 18 33 33 H 1.08996 * 109.60333 * 283.72633 * 21 16 15 34 34 H 1.08997 * 109.59679 * 44.20052 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2758 2.7465 -0.0006 6 1 3.0945 1.6964 1.2125 7 6 2.0069 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0001 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9489 -3.6477 -0.0016 12 6 1.2164 -4.9164 -0.0022 13 6 2.1957 -6.0618 -0.0027 14 6 2.5064 -6.7262 -1.1111 15 16 3.6652 -7.9923 -0.7337 16 6 3.6712 -7.5273 0.9619 17 6 2.8327 -6.4924 1.1579 18 6 2.6084 -5.8588 2.5243 19 6 3.1030 -6.8245 3.6027 20 6 4.5301 -7.2689 3.2687 21 6 4.4901 -8.1931 2.0476 22 1 -0.4850 0.8400 -0.0004 23 1 2.9189 -3.6477 -0.0020 24 1 0.5895 -4.9735 -0.8919 25 1 0.5901 -4.9748 0.8880 26 1 2.1047 -6.5222 -2.0927 27 1 3.1643 -4.9234 2.5889 28 1 1.5453 -5.6650 2.6671 29 1 2.4495 -7.6961 3.6379 30 1 3.0951 -6.3238 4.5708 31 1 4.9536 -7.8049 4.1180 32 1 5.1416 -6.3946 3.0454 33 1 4.0304 -9.1425 2.3221 34 1 5.5040 -8.3659 1.6867 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400004352.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:07 Heat of formation + Delta-G solvation = -29.928966 kcal Electronic energy + Delta-G solvation = -17501.829127 eV Core-core repulsion = 14718.058885 eV Total energy + Delta-G solvation = -2783.770242 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.39298 -37.17707 -35.49173 -32.83602 -32.06428 -30.73586 -29.04727 -27.11188 -25.18010 -23.21038 -22.52413 -20.08707 -19.54959 -17.99180 -17.44786 -16.74876 -15.31919 -14.93380 -14.60015 -14.26398 -14.06817 -13.87356 -13.71436 -13.54868 -12.92554 -12.48532 -12.37253 -12.10622 -11.83706 -11.44832 -11.28345 -11.11110 -10.93325 -10.86441 -10.73815 -10.54488 -10.40612 -10.28790 -10.22568 -8.82682 -8.38045 -8.14218 -7.55275 -7.46468 -6.16175 -4.61783 1.14652 1.76828 2.12487 2.79087 3.17168 3.22019 3.24107 4.13732 4.60933 4.63841 4.81573 4.84280 5.08874 5.15359 5.18834 5.38594 5.44199 5.53352 5.65988 5.73564 5.78114 5.80900 5.94451 6.00510 6.08510 6.15632 6.30939 6.37199 6.49516 6.71767 6.85974 7.45363 7.95791 8.11588 8.35612 9.04567 9.56915 10.62322 10.80909 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.025877 B = 0.004788 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.794081 B = 5847.039040 C = 6255.717222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.066 0.934 9 C 0.556 3.444 10 O -0.581 6.581 11 N -0.760 5.760 12 C 0.190 3.810 13 C -0.098 4.098 14 C -0.198 4.198 15 S 0.069 5.931 16 C -0.188 4.188 17 C -0.081 4.081 18 C -0.058 4.058 19 C -0.119 4.119 20 C -0.115 4.115 21 C -0.043 4.043 22 H 0.268 0.732 23 H 0.380 0.620 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.164 0.836 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.419 -15.072 3.897 18.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.131 4.131 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.085 0.915 9 C 0.359 3.641 10 O -0.464 6.464 11 N -0.416 5.416 12 C 0.063 3.937 13 C -0.111 4.111 14 C -0.334 4.334 15 S 0.336 5.664 16 C -0.305 4.305 17 C -0.093 4.093 18 C -0.098 4.098 19 C -0.157 4.157 20 C -0.154 4.154 21 C -0.082 4.082 22 H 0.079 0.921 23 H 0.212 0.788 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.182 0.818 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.059 -16.112 2.978 18.723 hybrid contribution 0.181 1.820 0.522 1.902 sum 9.239 -14.293 3.501 17.375 Atomic orbital electron populations 1.70012 1.07033 1.27316 1.35395 1.25692 0.94599 1.00211 0.92634 0.86448 0.79823 0.81114 0.79430 1.19321 1.20567 1.19299 1.20839 0.93522 0.89364 1.54463 0.91542 1.18220 0.87182 0.82335 0.76318 1.90600 1.14093 1.86772 1.54983 1.46144 1.08566 1.04173 1.82701 1.19512 0.91550 0.81489 1.01178 1.19130 1.00614 0.99417 0.91922 1.25244 1.04554 1.01077 1.02529 1.83923 1.44368 1.35400 1.02743 1.24629 1.05750 1.03094 0.97041 1.19513 0.97296 0.96370 0.96154 1.20561 1.02257 0.97932 0.89005 1.21557 0.96212 0.99421 0.98481 1.21584 0.97593 0.99525 0.96679 1.20245 0.98032 0.97851 0.92070 0.92086 0.78831 0.92750 0.92382 0.81846 0.90011 0.90279 0.91875 0.91394 0.91437 0.91335 0.90679 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.19 11.83 55.55 0.66 -22.53 16 2 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 3 Si 0.91 20.25 29.56 -169.99 -5.02 15.22 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.54 -15.49 9.54 -35.63 -0.34 -15.83 16 8 H 0.07 1.74 7.85 -52.49 -0.41 1.32 16 9 C 0.56 15.91 7.75 -12.99 -0.10 15.81 16 10 O -0.58 -18.95 15.02 5.20 0.08 -18.87 16 11 N -0.76 -17.28 5.54 -62.90 -0.35 -17.62 16 12 C 0.19 3.78 5.50 -5.20 -0.03 3.75 16 13 C -0.10 -1.60 5.16 -106.10 -0.55 -2.15 16 14 C -0.20 -2.91 10.90 28.89 0.31 -2.59 16 15 S 0.07 0.86 23.31 -107.50 -2.51 -1.64 16 16 C -0.19 -2.45 6.35 -35.24 -0.22 -2.68 16 17 C -0.08 -1.20 5.77 -104.75 -0.60 -1.80 16 18 C -0.06 -0.81 5.63 -27.11 -0.15 -0.96 16 19 C -0.12 -1.28 5.88 -26.67 -0.16 -1.44 16 20 C -0.11 -1.11 5.95 -26.55 -0.16 -1.26 16 21 C -0.04 -0.43 6.26 -27.44 -0.17 -0.60 16 22 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 23 H 0.38 7.90 8.44 -40.82 -0.34 7.55 16 24 H 0.05 1.13 8.06 -51.93 -0.42 0.72 16 25 H 0.06 1.21 7.21 -51.93 -0.37 0.83 16 26 H 0.16 2.21 8.06 -52.49 -0.42 1.79 16 27 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.08 1.17 7.28 -51.93 -0.38 0.79 16 29 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.70 8.11 -51.93 -0.42 0.28 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 298.88 15.07 4.50 4.50 Total: -1.00 -33.38 298.88 -9.35 -42.72 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -4.44 Total: 5.60 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -2.27 Total: -7.38 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.31 Total: -40.16 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: 0.08 Total: -18.87 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.51 Total: -1.64 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.38 -9.35 -42.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400004352.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.794 kcal (2) G-P(sol) polarization free energy of solvation -33.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds