Wall clock time and date at job start Mon Mar 30 2020 06:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86795 * 119.99987 * 2 1 4 4 H 1.48507 * 109.47268 * 239.99886 * 3 2 1 5 5 H 1.48501 * 109.47476 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47191 * 120.00012 * 3 2 1 7 7 C 1.40041 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99833 * 180.02562 * 7 2 1 9 9 C 1.46379 * 120.00333 * 359.97438 * 7 2 1 10 10 O 1.21687 * 119.99496 * 0.02562 * 9 7 2 11 11 N 1.34771 * 120.00340 * 179.97438 * 9 7 2 12 12 C 1.46496 * 120.00054 * 180.02562 * 11 9 7 13 13 C 1.50700 * 109.47206 * 180.02562 * 12 11 9 14 14 C 1.32917 * 122.14971 * 259.97754 * 13 12 11 15 15 S 1.75731 * 109.58339 * 180.29372 * 14 13 12 16 16 C 1.75830 * 91.07999 * 359.65277 * 15 14 13 17 17 C 1.34633 * 109.96652 * 0.34313 * 16 15 14 18 18 C 1.52282 * 122.82774 * 179.74124 * 17 16 15 19 19 C 1.52969 * 108.80239 * 342.53649 * 18 17 16 20 20 C 1.53155 * 109.31289 * 51.16165 * 19 18 17 21 21 C 1.51406 * 125.24454 * 180.02562 * 16 15 14 22 22 H 0.96997 * 119.99972 * 0.02562 * 1 2 3 23 23 H 0.97001 * 120.00035 * 0.02562 * 11 9 7 24 24 H 1.08998 * 109.47179 * 60.00278 * 12 11 9 25 25 H 1.09004 * 109.47565 * 299.99999 * 12 11 9 26 26 H 1.08002 * 125.20345 * 0.02562 * 14 13 12 27 27 H 1.09004 * 109.57607 * 102.32236 * 18 17 16 28 28 H 1.08997 * 109.58279 * 222.72942 * 18 17 16 29 29 H 1.08998 * 109.49593 * 291.21509 * 19 18 17 30 30 H 1.08998 * 109.50073 * 171.11543 * 19 18 17 31 31 H 1.08997 * 109.55974 * 169.59940 * 20 19 18 32 32 H 1.09006 * 109.55279 * 49.29338 * 20 19 18 33 33 H 1.08996 * 109.60333 * 283.72633 * 21 16 15 34 34 H 1.08997 * 109.59679 * 44.20052 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2758 2.7465 -0.0006 6 1 3.0945 1.6964 1.2125 7 6 2.0069 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0001 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9489 -3.6477 -0.0016 12 6 1.2164 -4.9164 -0.0022 13 6 2.1957 -6.0618 -0.0027 14 6 2.5064 -6.7262 -1.1111 15 16 3.6652 -7.9923 -0.7337 16 6 3.6712 -7.5273 0.9619 17 6 2.8327 -6.4924 1.1579 18 6 2.6084 -5.8588 2.5243 19 6 3.1030 -6.8245 3.6027 20 6 4.5301 -7.2689 3.2687 21 6 4.4901 -8.1931 2.0476 22 1 -0.4850 0.8400 -0.0004 23 1 2.9189 -3.6477 -0.0020 24 1 0.5895 -4.9735 -0.8919 25 1 0.5901 -4.9748 0.8880 26 1 2.1047 -6.5222 -2.0927 27 1 3.1643 -4.9234 2.5889 28 1 1.5453 -5.6650 2.6671 29 1 2.4495 -7.6961 3.6379 30 1 3.0951 -6.3238 4.5708 31 1 4.9536 -7.8049 4.1180 32 1 5.1416 -6.3946 3.0454 33 1 4.0304 -9.1425 2.3221 34 1 5.5040 -8.3659 1.6867 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400004352.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:06 Heat of formation + Delta-G solvation = -51.700520 kcal Electronic energy + Delta-G solvation = -17502.773213 eV Core-core repulsion = 14718.058885 eV Total energy + Delta-G solvation = -2784.714327 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.57824 -39.15604 -36.73769 -34.81334 -34.09496 -31.73979 -30.24778 -28.95531 -26.96807 -24.17873 -23.62402 -21.83872 -21.04161 -19.34502 -18.96324 -18.08491 -17.43647 -16.43176 -16.03002 -15.62683 -15.32740 -15.22663 -15.07963 -14.69554 -14.31359 -14.10745 -13.79732 -13.32847 -13.13986 -13.07109 -12.85661 -12.65102 -12.61742 -12.39263 -12.06483 -11.94757 -11.71885 -11.47308 -11.22012 -10.92246 -9.97763 -9.50960 -9.39874 -9.16905 -8.28799 -6.86422 0.01938 0.69527 1.00093 1.39672 1.43556 1.53982 1.57991 2.25942 2.46684 3.31460 3.59782 3.71147 3.80430 4.02177 4.12453 4.15844 4.29437 4.38416 4.52417 4.60493 4.70497 4.80107 4.85885 4.91196 5.04142 5.15698 5.18037 5.30945 5.32217 5.45575 5.52096 5.67061 5.86262 6.17714 6.25502 6.86003 7.52394 8.47696 8.66560 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.025877 B = 0.004788 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.794081 B = 5847.039040 C = 6255.717222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.030 3.970 3 Si 0.998 3.002 4 H -0.255 1.255 5 H -0.273 1.273 6 H -0.254 1.254 7 C -0.573 4.573 8 H 0.086 0.914 9 C 0.539 3.461 10 O -0.633 6.633 11 N -0.745 5.745 12 C 0.198 3.802 13 C -0.115 4.115 14 C -0.211 4.211 15 S 0.130 5.870 16 C -0.182 4.182 17 C -0.107 4.107 18 C -0.059 4.059 19 C -0.115 4.115 20 C -0.111 4.111 21 C -0.044 4.044 22 H 0.275 0.725 23 H 0.392 0.608 24 H 0.038 0.962 25 H 0.040 0.960 26 H 0.169 0.831 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.384 -16.033 4.282 20.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.185 4.185 3 Si 0.817 3.183 4 H -0.179 1.179 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.609 4.609 8 H 0.104 0.896 9 C 0.343 3.657 10 O -0.520 6.520 11 N -0.399 5.399 12 C 0.071 3.929 13 C -0.128 4.128 14 C -0.347 4.347 15 S 0.397 5.603 16 C -0.299 4.299 17 C -0.119 4.119 18 C -0.098 4.098 19 C -0.152 4.152 20 C -0.150 4.150 21 C -0.084 4.084 22 H 0.085 0.915 23 H 0.225 0.775 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.187 0.813 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.071 -17.127 3.363 21.222 hybrid contribution -0.731 1.978 0.366 2.140 sum 11.340 -15.150 3.728 19.287 Atomic orbital electron populations 1.70184 1.09539 1.29038 1.36356 1.26969 0.95518 1.04902 0.91145 0.85068 0.78212 0.74695 0.80288 1.17907 1.19780 1.17764 1.21374 0.94636 0.90029 1.54891 0.89632 1.18620 0.86813 0.84177 0.76054 1.90550 1.16184 1.87897 1.57395 1.45796 1.08994 1.04053 1.81045 1.19388 0.92221 0.81816 0.99483 1.18860 1.01257 0.99054 0.93619 1.25447 1.05094 1.01823 1.02341 1.83717 1.41932 1.32946 1.01683 1.25128 1.04539 1.01874 0.98405 1.19510 0.98705 0.97856 0.95801 1.20517 1.00705 0.98288 0.90287 1.21543 0.97281 0.98787 0.97597 1.21588 0.96351 0.99493 0.97569 1.20445 0.98546 0.98255 0.91104 0.91520 0.77534 0.94354 0.94160 0.81326 0.91694 0.92620 0.91359 0.90464 0.88650 0.92117 0.88832 0.89013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.08 11.83 21.83 0.26 -50.82 16 2 C 0.03 1.69 5.50 85.30 0.47 2.16 16 3 Si 1.00 41.40 29.56 68.60 2.03 43.43 16 4 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 7 C -0.57 -33.18 9.54 24.83 0.24 -32.94 16 8 H 0.09 4.46 7.85 -2.91 -0.02 4.43 16 9 C 0.54 32.25 7.75 86.36 0.67 32.92 16 10 O -0.63 -43.58 15.02 -4.31 -0.06 -43.65 16 11 N -0.74 -35.39 5.54 -471.15 -2.61 -38.00 16 12 C 0.20 8.36 5.50 85.63 0.47 8.83 16 13 C -0.12 -3.82 5.16 -20.80 -0.11 -3.93 16 14 C -0.21 -6.06 10.90 66.65 0.73 -5.34 16 15 S 0.13 2.91 23.31 -56.49 -1.32 1.60 16 16 C -0.18 -4.33 6.35 25.08 0.16 -4.17 16 17 C -0.11 -3.14 5.77 -19.95 -0.12 -3.25 16 18 C -0.06 -1.66 5.63 30.35 0.17 -1.49 16 19 C -0.11 -2.31 5.88 30.64 0.18 -2.13 16 20 C -0.11 -1.81 5.95 30.71 0.18 -1.62 16 21 C -0.04 -0.73 6.26 30.14 0.19 -0.54 16 22 H 0.27 15.47 8.29 -92.71 -0.77 14.70 16 23 H 0.39 16.71 8.44 -92.71 -0.78 15.93 16 24 H 0.04 1.72 8.06 -2.39 -0.02 1.70 16 25 H 0.04 1.82 7.21 -2.39 -0.02 1.81 16 26 H 0.17 4.53 8.06 -2.91 -0.02 4.51 16 27 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.06 1.78 7.28 -2.39 -0.02 1.77 16 29 H 0.07 1.31 8.10 -2.39 -0.02 1.29 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 1.10 8.11 -2.38 -0.02 1.08 16 33 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -75.32 298.88 1.86 -73.46 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 0.33 Total: 25.50 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 3.23 Total: -11.51 kcal Atomic # 7 Polarization: -86.47 SS G_CDS: -2.35 Total: -88.83 kcal Atomic # 8 Polarization: -43.58 SS G_CDS: -0.06 Total: -43.65 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -1.32 Total: 1.60 kcal Total: -75.32 1.86 -73.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400004352.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.758 kcal (2) G-P(sol) polarization free energy of solvation -75.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds