Wall clock time and date at job start Mon Mar 30 2020 06:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33089 * 1 3 3 Cl 1.73607 * 120.00081 * 2 1 4 4 C 1.47157 * 120.00200 * 180.02562 * 2 1 3 5 5 O 1.21623 * 120.00154 * 213.71324 * 4 2 1 6 6 N 1.34775 * 119.99921 * 33.70860 * 4 2 1 7 7 C 1.46501 * 119.99916 * 2.89087 * 6 4 2 8 8 C 1.50703 * 109.47150 * 253.16041 * 7 6 4 9 9 H 1.07999 * 119.99910 * 0.02562 * 8 7 6 10 10 C 1.37872 * 120.00065 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99902 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00071 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47194 * 90.00110 * 12 10 8 14 14 H 1.48513 * 109.46952 * 209.99785 * 12 10 8 15 15 H 1.48501 * 109.47014 * 329.99761 * 12 10 8 16 16 C 1.39830 * 120.00321 * 182.89216 * 6 4 2 17 17 C 1.38902 * 120.07221 * 340.81635 * 16 6 4 18 18 C 1.38100 * 119.92672 * 179.97438 * 17 16 6 19 19 C 1.38285 * 120.07464 * 0.02562 * 18 17 16 20 20 C 1.38284 * 120.14543 * 359.97438 * 19 18 17 21 21 C 1.38103 * 120.07217 * 359.97438 * 20 19 18 22 22 H 1.07996 * 120.00141 * 167.89043 * 1 2 3 23 23 H 1.08001 * 119.99650 * 347.89061 * 1 2 3 24 24 H 1.08999 * 109.47038 * 13.16017 * 7 6 4 25 25 H 1.09000 * 109.46926 * 133.16439 * 7 6 4 26 26 H 0.97004 * 120.00088 * 180.02562 * 11 10 8 27 27 H 1.08004 * 120.03265 * 359.70038 * 17 16 6 28 28 H 1.08004 * 119.96033 * 179.97438 * 18 17 16 29 29 H 1.07997 * 119.92382 * 179.97438 * 19 18 17 30 30 H 1.07999 * 119.96428 * 180.02562 * 20 19 18 31 31 H 1.08005 * 120.03557 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3309 0.0000 0.0000 3 17 2.1989 1.5035 0.0000 4 6 2.0667 -1.2744 -0.0006 5 8 3.1295 -1.3632 0.5840 6 7 1.5628 -2.3432 -0.6488 7 6 0.3146 -2.2193 -1.4056 8 6 -0.7958 -2.9140 -0.6603 9 1 -0.5922 -3.3989 0.2829 10 6 -2.0717 -2.9306 -1.1827 11 7 -2.3198 -2.3397 -2.3311 12 14 -3.4482 -3.7911 -0.2585 13 1 -4.1048 -2.8277 0.6612 14 1 -4.4469 -4.3092 -1.2279 15 1 -2.8873 -4.9206 0.5257 16 6 2.2313 -3.5703 -0.5990 17 6 3.5731 -3.6180 -0.2429 18 6 4.2303 -4.8316 -0.1942 19 6 3.5542 -5.9985 -0.4999 20 6 2.2184 -5.9546 -0.8548 21 6 1.5550 -4.7443 -0.9045 22 1 -0.5400 -0.9144 -0.1962 23 1 -0.5399 0.9145 0.1962 24 1 0.0664 -1.1649 -1.5271 25 1 0.4371 -2.6791 -2.3863 26 1 -3.2175 -2.3510 -2.6985 27 1 4.1029 -2.7064 -0.0087 28 1 5.2737 -4.8693 0.0822 29 1 4.0706 -6.9462 -0.4614 30 1 1.6931 -6.8678 -1.0926 31 1 0.5118 -4.7107 -1.1821 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401200175.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:16 Heat of formation + Delta-G solvation = 22.632150 kcal Electronic energy + Delta-G solvation = -17771.645290 eV Core-core repulsion = 14852.277468 eV Total energy + Delta-G solvation = -2919.367822 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.89079 -39.30486 -37.65289 -37.30397 -34.72656 -33.94388 -31.73999 -30.46196 -29.44345 -25.45527 -24.71591 -23.63140 -22.33846 -20.60154 -18.90859 -18.19971 -17.71598 -17.20904 -16.73097 -16.21228 -16.00198 -15.28055 -15.08181 -14.76945 -14.40103 -14.22771 -14.08885 -13.68257 -13.20641 -13.12089 -12.77764 -12.68285 -12.31946 -12.27345 -12.01627 -11.80860 -11.66830 -10.94386 -10.68638 -10.53867 -10.17176 -9.73346 -8.83450 -8.27144 -6.44180 0.07553 0.58774 0.59992 0.94030 1.43369 1.48130 1.55954 1.91774 2.17640 2.39056 3.01191 3.03590 3.37660 4.16754 4.21908 4.42221 4.54709 4.60478 4.67936 4.72864 4.88278 4.93199 5.08153 5.17364 5.27026 5.51711 5.60098 5.62913 5.69141 5.77427 5.86447 6.27267 6.37550 6.66962 6.97057 7.26722 8.76394 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.012068 B = 0.010468 C = 0.005957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.695375 B = 2674.077100 C = 4699.318640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.148 4.148 3 Cl -0.053 7.053 4 C 0.547 3.453 5 O -0.551 6.551 6 N -0.533 5.533 7 C 0.220 3.780 8 C -0.548 4.548 9 H 0.059 0.941 10 C 0.039 3.961 11 N -0.903 5.903 12 Si 0.953 3.047 13 H -0.269 1.269 14 H -0.282 1.282 15 H -0.272 1.272 16 C 0.132 3.868 17 C -0.174 4.174 18 C -0.109 4.109 19 C -0.141 4.141 20 C -0.108 4.108 21 C -0.156 4.156 22 H 0.174 0.826 23 H 0.145 0.855 24 H 0.069 0.931 25 H 0.019 0.981 26 H 0.274 0.726 27 H 0.144 0.856 28 H 0.146 0.854 29 H 0.153 0.847 30 H 0.145 0.855 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.718 -1.330 2.251 5.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.177 4.177 3 Cl -0.025 7.025 4 C 0.338 3.662 5 O -0.432 6.432 6 N -0.253 5.253 7 C 0.101 3.899 8 C -0.586 4.586 9 H 0.077 0.923 10 C -0.164 4.164 11 N -0.540 5.540 12 Si 0.778 3.222 13 H -0.195 1.195 14 H -0.207 1.207 15 H -0.197 1.197 16 C 0.038 3.962 17 C -0.194 4.194 18 C -0.128 4.128 19 C -0.160 4.160 20 C -0.127 4.127 21 C -0.176 4.176 22 H 0.190 0.810 23 H 0.163 0.837 24 H 0.086 0.914 25 H 0.037 0.963 26 H 0.083 0.917 27 H 0.161 0.839 28 H 0.164 0.836 29 H 0.171 0.829 30 H 0.163 0.837 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.153 -1.129 2.384 5.789 hybrid contribution -0.922 0.026 0.183 0.940 sum 4.231 -1.103 2.567 5.070 Atomic orbital electron populations 1.26570 0.93479 1.08433 0.85714 1.22522 0.93837 0.86758 1.14573 1.98327 1.78273 1.28656 1.97229 1.18532 0.84720 0.84268 0.78675 1.90563 1.22603 1.84537 1.45524 1.45761 1.25156 1.07656 1.46743 1.20084 0.78943 0.99979 0.90936 1.21328 0.93241 1.36677 1.07304 0.92268 1.25540 1.00357 0.95247 0.95304 1.69994 1.22856 1.42538 1.18578 0.85610 0.78838 0.79164 0.78545 1.19471 1.20699 1.19696 1.18239 0.91955 0.85320 1.00661 1.22046 0.93032 1.01079 1.03245 1.21332 1.00708 0.91545 0.99195 1.21446 0.94530 0.99123 1.00875 1.21287 0.95266 0.97027 0.99109 1.21525 1.01349 0.91510 1.03239 0.80966 0.83677 0.91377 0.96345 0.91698 0.83891 0.83633 0.82904 0.83694 0.84862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.69 12.30 66.66 0.82 -2.87 16 2 C -0.15 -5.57 5.93 23.46 0.14 -5.43 16 3 Cl -0.05 -1.76 28.84 -2.72 -0.08 -1.83 16 4 C 0.55 23.67 7.34 86.59 0.64 24.30 16 5 O -0.55 -25.14 13.62 -4.10 -0.06 -25.19 16 6 N -0.53 -23.55 2.75 -639.27 -1.76 -25.31 16 7 C 0.22 10.05 4.08 85.63 0.35 10.40 16 8 C -0.55 -25.80 5.16 25.60 0.13 -25.67 16 9 H 0.06 2.90 7.69 -2.91 -0.02 2.88 16 10 C 0.04 1.84 5.46 84.65 0.46 2.30 16 11 N -0.90 -44.69 13.29 21.45 0.28 -44.41 16 12 Si 0.95 38.04 29.54 68.60 2.03 40.07 16 13 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 14 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 15 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 16 C 0.13 5.62 6.31 38.18 0.24 5.86 16 17 C -0.17 -6.80 8.87 22.40 0.20 -6.61 16 18 C -0.11 -3.39 10.04 22.25 0.22 -3.17 16 19 C -0.14 -3.93 10.04 22.29 0.22 -3.71 16 20 C -0.11 -3.43 10.04 22.25 0.22 -3.21 16 21 C -0.16 -6.21 8.90 22.39 0.20 -6.01 16 22 H 0.17 7.07 3.29 -2.91 -0.01 7.06 16 23 H 0.15 4.10 8.06 -2.91 -0.02 4.08 16 24 H 0.07 3.08 4.41 -2.39 -0.01 3.07 16 25 H 0.02 0.92 8.07 -2.39 -0.02 0.90 16 26 H 0.27 12.87 8.31 -92.71 -0.77 12.10 16 27 H 0.14 6.00 5.12 -11.11 -0.06 5.94 16 28 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 29 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 30 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 31 H 0.13 5.80 5.62 -2.91 -0.02 5.79 16 Total: -1.00 -54.24 278.57 5.39 -48.85 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 1.12 Total: 21.62 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: 3.85 Total: -13.80 kcal Atomic # 7 Polarization: -68.24 SS G_CDS: -1.47 Total: -69.71 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.06 Total: -25.19 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.07 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -0.08 Total: -1.83 kcal Total: -54.24 5.39 -48.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401200175.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.487 kcal (2) G-P(sol) polarization free energy of solvation -54.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds