Wall clock time and date at job start Mon Mar 30 2020 06:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32772 * 124.71552 * 2 1 4 4 C 1.44427 * 113.08658 * 179.97438 * 3 2 1 5 5 C 1.47183 * 123.45849 * 180.02562 * 4 3 2 6 6 O 1.21637 * 120.00604 * 354.84053 * 5 4 3 7 7 N 1.34780 * 119.99719 * 174.83956 * 5 4 3 8 8 C 1.46495 * 120.00056 * 185.73839 * 7 5 4 9 9 C 1.53000 * 109.47453 * 183.70194 * 8 7 5 10 10 C 1.50707 * 115.54730 * 306.43774 * 9 8 7 11 11 H 1.08001 * 119.99853 * 145.11391 * 10 9 8 12 12 C 1.37876 * 119.99726 * 325.11127 * 10 9 8 13 13 N 1.31512 * 120.00501 * 349.39709 * 12 10 9 14 14 Si 1.86804 * 119.99684 * 169.39948 * 12 10 9 15 15 H 1.48503 * 109.47141 * 90.00303 * 14 12 10 16 16 H 1.48496 * 109.46970 * 209.99673 * 14 12 10 17 17 H 1.48491 * 109.47320 * 329.99909 * 14 12 10 18 18 C 1.52999 * 117.50395 * 160.76587 * 9 8 7 19 19 C 1.52998 * 117.50209 * 92.10158 * 9 8 7 20 20 C 1.36004 * 113.07413 * 0.02562 * 4 3 2 21 21 S 1.70446 * 110.82127 * 0.26664 * 20 4 3 22 22 H 1.08999 * 109.47273 * 89.99720 * 1 2 3 23 23 H 1.08994 * 109.47374 * 210.00000 * 1 2 3 24 24 H 1.09005 * 109.47012 * 329.99929 * 1 2 3 25 25 H 1.08006 * 123.45462 * 359.97438 * 3 2 1 26 26 H 0.97002 * 120.00027 * 5.73928 * 7 5 4 27 27 H 1.08994 * 109.47682 * 303.70207 * 8 7 5 28 28 H 1.09001 * 109.47048 * 63.70356 * 8 7 5 29 29 H 0.96992 * 120.00494 * 185.03968 * 13 12 10 30 30 H 1.08999 * 117.49423 * 359.97438 * 18 9 8 31 31 H 1.08992 * 117.49844 * 145.02022 * 18 9 8 32 32 H 1.09001 * 117.50062 * 214.98584 * 19 9 8 33 33 H 1.09007 * 117.49604 * 359.97438 * 19 9 8 34 34 H 1.08007 * 124.58699 * 179.97438 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2631 1.0914 0.0000 4 6 3.6777 0.8002 0.0006 5 6 4.7201 1.8394 0.0013 6 8 4.4102 3.0118 -0.0934 7 7 6.0180 1.4918 0.1068 8 6 7.0457 2.5280 0.2341 9 6 8.4296 1.8754 0.2436 10 6 8.6266 0.7844 1.2644 11 1 9.2498 -0.0665 1.0319 12 6 8.0114 0.8727 2.4952 13 7 7.4274 1.9932 2.8597 14 14 8.0074 -0.5996 3.6450 15 1 9.2073 -0.5487 4.5185 16 1 6.7827 -0.5688 4.4842 17 1 8.0291 -1.8513 2.8466 18 6 9.6319 2.7638 -0.0820 19 6 9.1493 1.7257 -1.0982 20 6 3.9476 -0.5327 0.0005 21 16 2.5064 -1.4427 -0.0078 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 1.8615 2.0940 -0.0004 26 1 6.2716 0.5556 0.0984 27 1 6.9744 3.2160 -0.6082 28 1 6.8960 3.0759 1.1644 29 1 7.0587 2.0799 3.7526 30 1 9.4370 3.8131 -0.3034 31 1 10.5655 2.5589 0.4419 32 1 9.7657 0.8383 -1.2424 33 1 8.6368 2.0917 -1.9878 34 1 4.9408 -0.9572 0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404096407.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:44 Heat of formation + Delta-G solvation = 10.238540 kcal Electronic energy + Delta-G solvation = -17667.741784 eV Core-core repulsion = 14885.713335 eV Total energy + Delta-G solvation = -2782.028448 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.15899 -37.09302 -36.30897 -33.21466 -32.25054 -31.79051 -26.97326 -26.06784 -25.44986 -23.54279 -21.24921 -20.23731 -19.33259 -18.65407 -17.34480 -16.59867 -16.00594 -14.86240 -14.67455 -14.39964 -14.08815 -13.79977 -13.54950 -13.25488 -12.94944 -12.37862 -12.19514 -12.07690 -11.93927 -11.68380 -11.45073 -11.08816 -10.87273 -10.81806 -10.53788 -10.29576 -9.67025 -9.21863 -9.07073 -8.85471 -8.66730 -8.32432 -8.22420 -7.82506 -6.10705 -4.21490 1.00470 1.65279 2.06119 2.31567 3.17672 3.27666 3.28106 3.96239 4.16494 4.26284 4.82772 4.94106 5.21933 5.25922 5.43827 5.46073 5.59249 5.70934 5.83505 6.00585 6.08810 6.25353 6.29563 6.51177 6.54465 6.60686 6.70052 6.89281 7.06553 7.25992 7.52319 7.56257 7.88509 8.28705 8.51170 8.78530 9.09882 9.39467 10.85854 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.019649 B = 0.006438 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.643478 B = 4347.928742 C = 5074.791304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.210 4.210 3 C -0.088 4.088 4 C -0.135 4.135 5 C 0.563 3.437 6 O -0.560 6.560 7 N -0.680 5.680 8 C 0.161 3.839 9 C 0.037 3.963 10 C -0.502 4.502 11 H 0.062 0.938 12 C 0.076 3.924 13 N -0.865 5.865 14 Si 0.887 3.113 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.272 1.272 18 C -0.195 4.195 19 C -0.212 4.212 20 C -0.212 4.212 21 S 0.158 5.842 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.150 0.850 26 H 0.399 0.601 27 H 0.029 0.971 28 H 0.110 0.890 29 H 0.264 0.736 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.324 -6.463 -4.808 13.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.326 4.326 3 C -0.117 4.117 4 C -0.153 4.153 5 C 0.348 3.652 6 O -0.442 6.442 7 N -0.327 5.327 8 C 0.039 3.961 9 C 0.036 3.964 10 C -0.539 4.539 11 H 0.080 0.920 12 C -0.129 4.129 13 N -0.501 5.501 14 Si 0.714 3.286 15 H -0.205 1.205 16 H -0.209 1.209 17 H -0.196 1.196 18 C -0.234 4.234 19 C -0.249 4.249 20 C -0.350 4.350 21 S 0.423 5.577 22 H 0.091 0.909 23 H 0.085 0.915 24 H 0.094 0.906 25 H 0.168 0.832 26 H 0.234 0.766 27 H 0.047 0.953 28 H 0.127 0.873 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -10.974 -7.099 -4.714 13.894 hybrid contribution 0.863 0.346 0.744 1.191 sum -10.112 -6.752 -3.969 12.790 Atomic orbital electron populations 1.20289 0.87736 1.03036 1.02566 1.24287 1.00171 0.96068 1.12121 1.21052 0.90690 0.99502 1.00475 1.20523 0.94574 0.92838 1.07351 1.17499 0.82494 0.87486 0.77767 1.90709 1.82445 1.18932 1.52092 1.45667 1.05143 1.11419 1.70479 1.21050 0.85081 0.88600 1.01402 1.19190 0.88646 0.96564 0.91985 1.20475 1.30294 1.04990 0.98124 0.91995 1.24975 0.94361 0.95724 0.97807 1.69836 1.37012 1.24288 1.18943 0.86662 0.77815 0.83154 0.80972 1.20490 1.20944 1.19631 1.22915 1.01615 0.94405 1.04417 1.22966 1.06956 1.00984 0.94024 1.25646 1.04365 0.97581 1.07436 1.82774 0.94379 1.08982 1.71521 0.90945 0.91465 0.90582 0.83194 0.76647 0.95277 0.87255 0.92537 0.91468 0.90177 0.90621 0.91335 0.81103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.35 36.00 0.37 -0.35 16 2 C -0.21 -2.72 6.44 -36.18 -0.23 -2.95 16 3 C -0.09 -1.39 9.96 -39.02 -0.39 -1.78 16 4 C -0.14 -2.45 5.98 -104.63 -0.63 -3.07 16 5 C 0.56 12.32 7.78 -12.63 -0.10 12.22 16 6 O -0.56 -13.90 16.80 5.24 0.09 -13.81 16 7 N -0.68 -14.95 5.24 -61.46 -0.32 -15.27 16 8 C 0.16 3.87 4.75 -4.04 -0.02 3.85 16 9 C 0.04 0.87 2.00 -155.66 -0.31 0.56 16 10 C -0.50 -12.65 8.27 -34.44 -0.28 -12.93 16 11 H 0.06 1.56 7.84 -52.49 -0.41 1.15 16 12 C 0.08 1.95 5.13 -17.82 -0.09 1.85 16 13 N -0.87 -23.17 10.75 55.43 0.60 -22.57 16 14 Si 0.89 19.85 29.55 -169.99 -5.02 14.83 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 17 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 18 C -0.19 -4.30 9.96 -26.69 -0.27 -4.56 16 19 C -0.21 -4.43 9.92 -26.69 -0.26 -4.70 16 20 C -0.21 -3.28 10.38 29.93 0.31 -2.97 16 21 S 0.16 1.96 23.00 -107.50 -2.47 -0.51 16 22 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.15 2.33 8.06 -52.48 -0.42 1.90 16 26 H 0.40 8.27 6.44 -40.82 -0.26 8.00 16 27 H 0.03 0.69 8.06 -51.93 -0.42 0.27 16 28 H 0.11 2.97 6.04 -51.93 -0.31 2.65 16 29 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 30 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 31 H 0.08 1.77 8.14 -51.93 -0.42 1.34 16 32 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.17 2.47 7.03 -52.48 -0.37 2.10 16 LS Contribution 306.34 15.07 4.62 4.62 Total: -1.00 -28.80 306.34 -8.71 -37.51 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -4.29 Total: 10.05 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -1.90 Total: -14.84 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.27 Total: -37.85 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.09 Total: -13.81 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.47 Total: -0.51 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.80 -8.71 -37.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404096407.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.750 kcal (2) G-P(sol) polarization free energy of solvation -28.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds