Wall clock time and date at job start Mon Mar 30 2020 06:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32772 * 124.71552 * 2 1 4 4 C 1.44427 * 113.08658 * 179.97438 * 3 2 1 5 5 C 1.47183 * 123.45849 * 180.02562 * 4 3 2 6 6 O 1.21637 * 120.00604 * 354.84053 * 5 4 3 7 7 N 1.34780 * 119.99719 * 174.83956 * 5 4 3 8 8 C 1.46495 * 120.00056 * 185.73839 * 7 5 4 9 9 C 1.53000 * 109.47453 * 183.70194 * 8 7 5 10 10 C 1.50707 * 115.54730 * 306.43774 * 9 8 7 11 11 H 1.08001 * 119.99853 * 145.11391 * 10 9 8 12 12 C 1.37876 * 119.99726 * 325.11127 * 10 9 8 13 13 N 1.31512 * 120.00501 * 349.39709 * 12 10 9 14 14 Si 1.86804 * 119.99684 * 169.39948 * 12 10 9 15 15 H 1.48503 * 109.47141 * 90.00303 * 14 12 10 16 16 H 1.48496 * 109.46970 * 209.99673 * 14 12 10 17 17 H 1.48491 * 109.47320 * 329.99909 * 14 12 10 18 18 C 1.52999 * 117.50395 * 160.76587 * 9 8 7 19 19 C 1.52998 * 117.50209 * 92.10158 * 9 8 7 20 20 C 1.36004 * 113.07413 * 0.02562 * 4 3 2 21 21 S 1.70446 * 110.82127 * 0.26664 * 20 4 3 22 22 H 1.08999 * 109.47273 * 89.99720 * 1 2 3 23 23 H 1.08994 * 109.47374 * 210.00000 * 1 2 3 24 24 H 1.09005 * 109.47012 * 329.99929 * 1 2 3 25 25 H 1.08006 * 123.45462 * 359.97438 * 3 2 1 26 26 H 0.97002 * 120.00027 * 5.73928 * 7 5 4 27 27 H 1.08994 * 109.47682 * 303.70207 * 8 7 5 28 28 H 1.09001 * 109.47048 * 63.70356 * 8 7 5 29 29 H 0.96992 * 120.00494 * 185.03968 * 13 12 10 30 30 H 1.08999 * 117.49423 * 359.97438 * 18 9 8 31 31 H 1.08992 * 117.49844 * 145.02022 * 18 9 8 32 32 H 1.09001 * 117.50062 * 214.98584 * 19 9 8 33 33 H 1.09007 * 117.49604 * 359.97438 * 19 9 8 34 34 H 1.08007 * 124.58699 * 179.97438 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2631 1.0914 0.0000 4 6 3.6777 0.8002 0.0006 5 6 4.7201 1.8394 0.0013 6 8 4.4102 3.0118 -0.0934 7 7 6.0180 1.4918 0.1068 8 6 7.0457 2.5280 0.2341 9 6 8.4296 1.8754 0.2436 10 6 8.6266 0.7844 1.2644 11 1 9.2498 -0.0665 1.0319 12 6 8.0114 0.8727 2.4952 13 7 7.4274 1.9932 2.8597 14 14 8.0074 -0.5996 3.6450 15 1 9.2073 -0.5487 4.5185 16 1 6.7827 -0.5688 4.4842 17 1 8.0291 -1.8513 2.8466 18 6 9.6319 2.7638 -0.0820 19 6 9.1493 1.7257 -1.0982 20 6 3.9476 -0.5327 0.0005 21 16 2.5064 -1.4427 -0.0078 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 1.8615 2.0940 -0.0004 26 1 6.2716 0.5556 0.0984 27 1 6.9744 3.2160 -0.6082 28 1 6.8960 3.0759 1.1644 29 1 7.0587 2.0799 3.7526 30 1 9.4370 3.8131 -0.3034 31 1 10.5655 2.5589 0.4419 32 1 9.7657 0.8383 -1.2424 33 1 8.6368 2.0917 -1.9878 34 1 4.9408 -0.9572 0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404096407.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:44 Heat of formation + Delta-G solvation = -6.293296 kcal Electronic energy + Delta-G solvation = -17668.458658 eV Core-core repulsion = 14885.713335 eV Total energy + Delta-G solvation = -2782.745322 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.78116 -38.68366 -37.82225 -34.94589 -34.16826 -32.91047 -28.40096 -27.59778 -27.18213 -24.96800 -22.98092 -21.57756 -21.17989 -20.11233 -18.82252 -17.94063 -17.72574 -16.75733 -16.33860 -16.06252 -15.60157 -15.11333 -14.72472 -14.61384 -14.44768 -13.88178 -13.67562 -13.47781 -13.27011 -12.93921 -12.90605 -12.88450 -12.64401 -12.30718 -12.06864 -11.94390 -11.46360 -11.11610 -10.84262 -10.66110 -10.15325 -9.82544 -9.71714 -9.27074 -8.04445 -6.21026 -0.20712 0.58712 0.91964 1.02422 1.39858 1.44603 1.52598 2.35566 2.39110 2.56232 3.03525 3.62682 3.79818 4.09230 4.19910 4.26249 4.39716 4.49723 4.53163 4.72664 4.76934 4.78985 4.94104 4.94393 5.02447 5.09233 5.20615 5.28094 5.40565 5.49895 5.56868 5.76606 5.89377 6.35421 6.73312 6.89563 7.39739 7.42488 8.90251 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.019649 B = 0.006438 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.643478 B = 4347.928742 C = 5074.791304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.199 4.199 3 C -0.119 4.119 4 C -0.170 4.170 5 C 0.558 3.442 6 O -0.602 6.602 7 N -0.678 5.678 8 C 0.173 3.827 9 C 0.009 3.991 10 C -0.507 4.507 11 H 0.062 0.938 12 C 0.037 3.963 13 N -0.894 5.894 14 Si 0.943 3.057 15 H -0.281 1.281 16 H -0.290 1.290 17 H -0.257 1.257 18 C -0.197 4.197 19 C -0.185 4.185 20 C -0.221 4.221 21 S 0.243 5.757 22 H 0.090 0.910 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.141 0.859 26 H 0.404 0.596 27 H 0.023 0.977 28 H 0.074 0.926 29 H 0.259 0.741 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.402 -9.188 -5.354 15.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.316 4.316 3 C -0.148 4.148 4 C -0.188 4.188 5 C 0.345 3.655 6 O -0.487 6.487 7 N -0.325 5.325 8 C 0.049 3.951 9 C 0.008 3.992 10 C -0.544 4.544 11 H 0.080 0.920 12 C -0.165 4.165 13 N -0.531 5.531 14 Si 0.768 3.232 15 H -0.207 1.207 16 H -0.216 1.216 17 H -0.180 1.180 18 C -0.236 4.236 19 C -0.222 4.222 20 C -0.360 4.360 21 S 0.509 5.491 22 H 0.109 0.891 23 H 0.106 0.894 24 H 0.100 0.900 25 H 0.158 0.842 26 H 0.240 0.760 27 H 0.041 0.959 28 H 0.092 0.908 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -12.043 -9.860 -5.276 16.435 hybrid contribution 1.159 1.130 0.879 1.841 sum -10.884 -8.731 -4.398 14.630 Atomic orbital electron populations 1.20479 0.84850 1.04400 1.04153 1.24805 1.02138 0.95702 1.08960 1.20998 0.90095 1.00278 1.03408 1.20309 0.94472 0.92815 1.11247 1.18136 0.83008 0.87962 0.76405 1.90661 1.83050 1.20949 1.54019 1.45573 1.05111 1.11202 1.70601 1.20715 0.86183 0.88962 0.99248 1.19245 0.88767 0.97338 0.93866 1.20669 1.30047 1.05213 0.98493 0.91988 1.25588 0.94156 0.97591 0.99157 1.70011 1.38155 1.26022 1.18891 0.85779 0.77164 0.81024 0.79189 1.20667 1.21600 1.18041 1.22932 1.00681 0.95067 1.04882 1.22957 1.05413 1.00699 0.93170 1.25897 1.06673 0.97327 1.06087 1.82492 0.91223 1.06641 1.68702 0.89110 0.89361 0.89999 0.84156 0.75996 0.95857 0.90809 0.93163 0.90808 0.90374 0.89471 0.89946 0.80553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.21 10.35 71.24 0.74 -0.47 16 2 C -0.20 -4.68 6.44 24.51 0.16 -4.52 16 3 C -0.12 -3.76 9.96 22.67 0.23 -3.54 16 4 C -0.17 -6.22 5.98 -19.87 -0.12 -6.34 16 5 C 0.56 25.37 7.78 86.59 0.67 26.04 16 6 O -0.60 -31.51 16.80 -4.15 -0.07 -31.58 16 7 N -0.68 -30.63 5.24 -466.61 -2.45 -33.08 16 8 C 0.17 8.55 4.75 86.38 0.41 8.96 16 9 C 0.01 0.40 2.00 -52.93 -0.11 0.30 16 10 C -0.51 -25.43 8.27 25.60 0.21 -25.22 16 11 H 0.06 3.05 7.84 -2.91 -0.02 3.03 16 12 C 0.04 1.89 5.13 84.65 0.43 2.33 16 13 N -0.89 -49.12 10.75 21.45 0.23 -48.89 16 14 Si 0.94 40.49 29.55 68.60 2.03 42.52 16 15 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 16 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 17 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 18 C -0.20 -8.61 9.96 30.62 0.30 -8.30 16 19 C -0.19 -7.49 9.92 30.62 0.30 -7.18 16 20 C -0.22 -6.55 10.38 67.30 0.70 -5.85 16 21 S 0.24 5.21 23.00 -56.49 -1.30 3.91 16 22 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 25 H 0.14 4.54 8.06 -2.91 -0.02 4.52 16 26 H 0.40 16.96 6.44 -92.71 -0.60 16.36 16 27 H 0.02 1.15 8.06 -2.39 -0.02 1.13 16 28 H 0.07 4.21 6.04 -2.39 -0.01 4.20 16 29 H 0.26 13.94 8.32 -92.71 -0.77 13.16 16 30 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 31 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 32 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 33 H 0.08 3.10 8.14 -2.38 -0.02 3.08 16 34 H 0.18 4.86 7.03 -2.91 -0.02 4.84 16 Total: -1.00 -63.41 306.34 2.89 -60.52 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: 0.52 Total: 30.40 kcal Atomic # 6 Polarization: -27.73 SS G_CDS: 3.93 Total: -23.80 kcal Atomic # 7 Polarization: -79.75 SS G_CDS: -2.22 Total: -81.97 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -0.07 Total: -31.58 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Atomic # 16 Polarization: 5.21 SS G_CDS: -1.30 Total: 3.91 kcal Total: -63.41 2.89 -60.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404096407.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.226 kcal (2) G-P(sol) polarization free energy of solvation -63.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds