Wall clock time and date at job start Mon Mar 30 2020 06:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30778 * 1 3 3 Si 1.86801 * 119.99477 * 2 1 4 4 H 1.48504 * 109.46743 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47366 * 300.00189 * 3 2 1 6 6 H 1.48493 * 109.47364 * 60.00329 * 3 2 1 7 7 C 1.40135 * 120.00353 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99874 * 179.97438 * 7 2 1 9 9 C 1.40271 * 119.99891 * 359.97438 * 7 2 1 10 10 C 1.39569 * 126.54467 * 359.97184 * 9 7 2 11 11 C 1.39715 * 107.47614 * 180.02562 * 10 9 7 12 12 C 1.48443 * 125.61507 * 180.02562 * 11 10 9 13 13 C 1.39740 * 120.53763 * 179.97438 * 12 11 10 14 14 C 1.38421 * 118.31227 * 180.02562 * 13 12 11 15 15 C 1.38311 * 119.28418 * 359.97438 * 14 13 12 16 16 N 1.31889 * 121.02084 * 0.02562 * 15 14 13 17 17 C 1.31751 * 121.84984 * 359.70041 * 16 15 14 18 18 N 1.32034 * 108.77816 * 359.97438 * 11 10 9 19 19 N 1.37528 * 126.54406 * 180.02562 * 9 7 2 20 20 C 1.46497 * 126.09092 * 359.95023 * 19 9 7 21 21 F 1.39895 * 109.47308 * 300.05317 * 20 19 9 22 22 F 1.39902 * 109.46861 * 60.05460 * 20 19 9 23 23 H 0.97001 * 119.99850 * 359.97438 * 1 2 3 24 24 H 1.08003 * 126.26160 * 359.97438 * 10 9 7 25 25 H 1.08002 * 120.84261 * 0.02562 * 13 12 11 26 26 H 1.08001 * 120.35613 * 180.02562 * 14 13 12 27 27 H 1.07997 * 119.48516 * 179.97438 * 15 14 13 28 28 H 1.08002 * 119.69772 * 180.28870 * 17 16 15 29 29 H 1.09005 * 109.47130 * 180.02562 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 3.7017 1.3465 -0.0006 5 1 1.8828 2.3966 -1.2125 6 1 1.8829 2.3965 1.2125 7 6 2.0085 -1.2136 -0.0005 8 1 3.0885 -1.2135 -0.0010 9 6 1.3072 -2.4284 -0.0005 10 6 -0.0794 -2.5875 0.0005 11 6 -0.3443 -3.9593 0.0007 12 6 -1.6930 -4.5793 0.0011 13 6 -1.8355 -5.9694 0.0007 14 6 -3.1147 -6.4982 0.0007 15 6 -4.2008 -5.6419 0.0015 16 7 -4.0347 -4.3335 0.0019 17 6 -2.8369 -3.7847 0.0074 18 7 0.8026 -4.6136 -0.0008 19 7 1.8547 -3.6900 -0.0005 20 6 3.2842 -4.0104 -0.0016 21 9 3.8828 -3.4682 -1.1439 22 9 3.8841 -3.4695 1.1407 23 1 -0.4850 0.8401 0.0004 24 1 -0.8133 -1.7952 0.0019 25 1 -0.9695 -6.6148 0.0005 26 1 -3.2631 -7.5680 0.0008 27 1 -5.2003 -6.0510 0.0011 28 1 -2.7413 -2.7089 0.0122 29 1 3.4140 -5.0927 -0.0018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409443501.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:41 Heat of formation + Delta-G solvation = 0.943857 kcal Electronic energy + Delta-G solvation = -19198.350638 eV Core-core repulsion = 15758.538412 eV Total energy + Delta-G solvation = -3439.812226 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.072 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.43411 -46.54680 -39.78155 -38.79599 -33.98173 -32.79794 -31.61038 -29.73150 -29.09347 -25.60482 -24.90339 -22.96643 -22.82979 -19.92933 -19.30220 -17.83628 -16.90415 -16.68257 -16.49876 -16.22127 -15.40666 -15.02371 -14.39225 -13.67171 -13.62179 -13.42438 -12.94091 -12.74910 -12.66582 -12.63790 -12.58470 -12.28933 -11.75020 -11.56756 -11.41742 -11.07972 -10.57881 -10.00356 -9.90033 -9.52183 -9.27341 -9.10805 -8.97982 -7.79520 -7.22206 -6.87749 -4.73647 1.33422 1.66611 2.78569 2.97879 3.04038 3.15770 3.29242 3.79997 3.99699 4.28282 4.59378 4.82862 4.98425 5.07721 5.19480 5.34966 5.41326 5.48650 5.59986 5.86892 6.14958 6.45403 6.59392 6.84534 6.96140 6.99127 7.16135 7.49563 7.69552 8.17419 8.27129 8.36780 8.56367 8.77934 9.15616 10.00289 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.018780 B = 0.006863 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.567313 B = 4078.862191 C = 5394.934892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.077 3.923 3 Si 0.929 3.071 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.432 4.432 8 H 0.081 0.919 9 C 0.262 3.738 10 C -0.338 4.338 11 C 0.116 3.884 12 C -0.031 4.031 13 C -0.064 4.064 14 C -0.179 4.179 15 C 0.079 3.921 16 N -0.487 5.487 17 C 0.118 3.882 18 N -0.374 5.374 19 N -0.475 5.475 20 C 0.513 3.487 21 F -0.196 7.196 22 F -0.196 7.196 23 H 0.284 0.716 24 H 0.169 0.831 25 H 0.136 0.864 26 H 0.129 0.871 27 H 0.149 0.851 28 H 0.165 0.835 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.011 -5.617 0.015 5.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.144 4.144 3 Si 0.753 3.247 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.100 0.900 9 C 0.148 3.852 10 C -0.370 4.370 11 C -0.043 4.043 12 C -0.035 4.035 13 C -0.091 4.091 14 C -0.199 4.199 15 C -0.078 4.078 16 N -0.195 5.195 17 C -0.040 4.040 18 N -0.198 5.198 19 N -0.272 5.272 20 C 0.376 3.624 21 F -0.178 7.178 22 F -0.178 7.178 23 H 0.095 0.905 24 H 0.186 0.814 25 H 0.153 0.847 26 H 0.147 0.853 27 H 0.166 0.834 28 H 0.182 0.818 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.230 -6.095 0.011 6.218 hybrid contribution 1.016 1.004 -0.002 1.428 sum -0.214 -5.091 0.009 5.095 Atomic orbital electron populations 1.69663 1.07567 1.29238 1.33614 1.25829 0.94983 1.01459 0.92145 0.85903 0.80505 0.79517 0.78796 1.18294 1.19482 1.19479 1.18857 0.94706 0.88567 1.44660 0.90045 1.18799 0.92020 0.83582 0.90823 1.22162 0.95032 0.93199 1.26563 1.20132 0.89979 0.94103 1.00044 1.19106 0.92091 0.93065 0.99240 1.21705 0.97545 0.94730 0.95126 1.22000 0.93437 1.00951 1.03533 1.22663 0.98805 0.89245 0.97087 1.67693 1.25992 1.13371 1.12473 1.22982 0.86161 1.01031 0.93866 1.77053 0.92698 1.13437 1.36604 1.49503 1.03041 1.05864 1.68757 1.20241 0.75691 0.94687 0.71825 1.93055 1.83552 1.89297 1.51888 1.93056 1.83498 1.89346 1.51898 0.90468 0.81378 0.84660 0.85303 0.83395 0.81764 0.84395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.87 10.29 55.56 0.57 -18.30 15 2 C 0.08 1.86 5.50 -17.29 -0.10 1.76 15 3 Si 0.93 18.14 29.56 -169.99 -5.03 13.11 15 4 H -0.26 -5.08 7.11 56.52 0.40 -4.68 15 5 H -0.27 -5.14 7.11 56.52 0.40 -4.74 15 6 H -0.27 -5.14 7.11 56.52 0.40 -4.74 15 7 C -0.43 -11.24 8.96 -38.11 -0.34 -11.58 15 8 H 0.08 2.08 7.51 -52.49 -0.39 1.68 15 9 C 0.26 6.97 6.67 -84.05 -0.56 6.41 15 10 C -0.34 -8.78 9.12 -38.53 -0.35 -9.13 15 11 C 0.12 2.76 6.96 -83.02 -0.58 2.18 15 12 C -0.03 -0.63 5.89 -104.74 -0.62 -1.24 15 13 C -0.06 -1.10 9.81 -38.95 -0.38 -1.48 15 14 C -0.18 -2.53 10.10 -39.49 -0.40 -2.92 15 15 C 0.08 1.16 11.17 -17.50 -0.20 0.96 15 16 N -0.49 -8.55 10.35 -12.98 -0.13 -8.69 15 17 C 0.12 2.26 10.73 -17.20 -0.18 2.07 15 18 N -0.37 -8.99 12.24 33.27 0.41 -8.58 15 19 N -0.47 -11.58 3.94 -63.92 -0.25 -11.83 15 20 C 0.51 10.30 5.97 59.85 0.36 10.66 15 21 F -0.20 -4.02 17.33 2.25 0.04 -3.98 15 22 F -0.20 -4.02 17.34 2.25 0.04 -3.98 15 23 H 0.28 6.19 8.29 -40.82 -0.34 5.85 15 24 H 0.17 4.39 4.97 -52.48 -0.26 4.13 15 25 H 0.14 2.24 7.91 -52.49 -0.42 1.82 15 26 H 0.13 1.36 8.06 -52.49 -0.42 0.94 15 27 H 0.15 1.62 8.06 -52.49 -0.42 1.20 15 28 H 0.17 3.14 7.01 -52.49 -0.37 2.77 15 29 H 0.14 2.19 8.14 -51.93 -0.42 1.76 15 LS Contribution 273.22 15.07 4.12 4.12 Total: -1.00 -29.02 273.22 -5.43 -34.44 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -1.84 Total: 6.00 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -3.35 Total: -2.30 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: 0.59 Total: -47.40 kcal Atomic # 9 Polarization: -8.04 SS G_CDS: 0.08 Total: -7.96 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.02 -5.43 -34.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409443501.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.386 kcal (2) G-P(sol) polarization free energy of solvation -29.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds