Wall clock time and date at job start Mon Mar 30 2020 06:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30778 * 1 3 3 Si 1.86801 * 119.99477 * 2 1 4 4 H 1.48504 * 109.46743 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47366 * 300.00189 * 3 2 1 6 6 H 1.48493 * 109.47364 * 60.00329 * 3 2 1 7 7 C 1.40135 * 120.00353 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99874 * 179.97438 * 7 2 1 9 9 C 1.40271 * 119.99891 * 359.97438 * 7 2 1 10 10 C 1.39569 * 126.54467 * 359.97184 * 9 7 2 11 11 C 1.39715 * 107.47614 * 180.02562 * 10 9 7 12 12 C 1.48443 * 125.61507 * 180.02562 * 11 10 9 13 13 C 1.39740 * 120.53763 * 179.97438 * 12 11 10 14 14 C 1.38421 * 118.31227 * 180.02562 * 13 12 11 15 15 C 1.38311 * 119.28418 * 359.97438 * 14 13 12 16 16 N 1.31889 * 121.02084 * 0.02562 * 15 14 13 17 17 C 1.31751 * 121.84984 * 359.70041 * 16 15 14 18 18 N 1.32034 * 108.77816 * 359.97438 * 11 10 9 19 19 N 1.37528 * 126.54406 * 180.02562 * 9 7 2 20 20 C 1.46497 * 126.09092 * 359.95023 * 19 9 7 21 21 F 1.39895 * 109.47308 * 300.05317 * 20 19 9 22 22 F 1.39902 * 109.46861 * 60.05460 * 20 19 9 23 23 H 0.97001 * 119.99850 * 359.97438 * 1 2 3 24 24 H 1.08003 * 126.26160 * 359.97438 * 10 9 7 25 25 H 1.08002 * 120.84261 * 0.02562 * 13 12 11 26 26 H 1.08001 * 120.35613 * 180.02562 * 14 13 12 27 27 H 1.07997 * 119.48516 * 179.97438 * 15 14 13 28 28 H 1.08002 * 119.69772 * 180.28870 * 17 16 15 29 29 H 1.09005 * 109.47130 * 180.02562 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 3.7017 1.3465 -0.0006 5 1 1.8828 2.3966 -1.2125 6 1 1.8829 2.3965 1.2125 7 6 2.0085 -1.2136 -0.0005 8 1 3.0885 -1.2135 -0.0010 9 6 1.3072 -2.4284 -0.0005 10 6 -0.0794 -2.5875 0.0005 11 6 -0.3443 -3.9593 0.0007 12 6 -1.6930 -4.5793 0.0011 13 6 -1.8355 -5.9694 0.0007 14 6 -3.1147 -6.4982 0.0007 15 6 -4.2008 -5.6419 0.0015 16 7 -4.0347 -4.3335 0.0019 17 6 -2.8369 -3.7847 0.0074 18 7 0.8026 -4.6136 -0.0008 19 7 1.8547 -3.6900 -0.0005 20 6 3.2842 -4.0104 -0.0016 21 9 3.8828 -3.4682 -1.1439 22 9 3.8841 -3.4695 1.1407 23 1 -0.4850 0.8401 0.0004 24 1 -0.8133 -1.7952 0.0019 25 1 -0.9695 -6.6148 0.0005 26 1 -3.2631 -7.5680 0.0008 27 1 -5.2003 -6.0510 0.0011 28 1 -2.7413 -2.7089 0.0122 29 1 3.4140 -5.0927 -0.0018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409443501.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:41 Heat of formation + Delta-G solvation = -16.956213 kcal Electronic energy + Delta-G solvation = -19199.126843 eV Core-core repulsion = 15758.538412 eV Total energy + Delta-G solvation = -3440.588431 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.072 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.05774 -48.17542 -41.31989 -40.41697 -35.82339 -34.36826 -32.95634 -31.27540 -30.97166 -27.45505 -26.51377 -24.38766 -24.25717 -21.75983 -20.93313 -19.63354 -18.54588 -18.19717 -18.01091 -17.88184 -16.88890 -16.54883 -15.89135 -15.27055 -15.09243 -14.97935 -14.57224 -14.41799 -14.35889 -14.21563 -14.03923 -13.93317 -13.56632 -13.13073 -13.01269 -12.57404 -12.18807 -11.81985 -11.55219 -11.13041 -11.05297 -10.45547 -10.40078 -9.50580 -9.07368 -8.68634 -6.68311 -0.05456 0.35614 1.12262 1.35055 1.46425 1.55666 1.62803 2.16370 2.33933 2.73113 3.02394 3.22912 3.40203 3.57591 3.86277 3.94889 4.04136 4.10441 4.17851 4.59540 4.87333 4.95464 5.07870 5.11108 5.20214 5.43051 5.56951 5.81575 5.85461 6.26260 6.39618 6.65785 6.85927 7.04576 7.27693 8.22024 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.018780 B = 0.006863 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.567313 B = 4078.862191 C = 5394.934892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.037 3.963 3 Si 1.001 2.999 4 H -0.261 1.261 5 H -0.259 1.259 6 H -0.259 1.259 7 C -0.462 4.462 8 H 0.076 0.924 9 C 0.234 3.766 10 C -0.372 4.372 11 C 0.118 3.882 12 C -0.066 4.066 13 C -0.065 4.065 14 C -0.160 4.160 15 C 0.089 3.911 16 N -0.503 5.503 17 C 0.109 3.891 18 N -0.375 5.375 19 N -0.489 5.489 20 C 0.507 3.493 21 F -0.201 7.201 22 F -0.201 7.201 23 H 0.294 0.706 24 H 0.158 0.842 25 H 0.140 0.860 26 H 0.178 0.822 27 H 0.195 0.805 28 H 0.148 0.852 29 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.904 -6.970 0.014 7.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.182 4.182 3 Si 0.820 3.180 4 H -0.185 1.185 5 H -0.183 1.183 6 H -0.183 1.183 7 C -0.497 4.497 8 H 0.094 0.906 9 C 0.119 3.881 10 C -0.403 4.403 11 C -0.042 4.042 12 C -0.070 4.070 13 C -0.092 4.092 14 C -0.179 4.179 15 C -0.068 4.068 16 N -0.211 5.211 17 C -0.049 4.049 18 N -0.199 5.199 19 N -0.286 5.286 20 C 0.371 3.629 21 F -0.183 7.183 22 F -0.183 7.183 23 H 0.106 0.894 24 H 0.175 0.825 25 H 0.158 0.842 26 H 0.195 0.805 27 H 0.211 0.789 28 H 0.165 0.835 29 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -2.113 -7.458 0.010 7.752 hybrid contribution 1.139 1.276 -0.001 1.710 sum -0.974 -6.183 0.009 6.259 Atomic orbital electron populations 1.69716 1.08817 1.30764 1.33092 1.26791 0.95850 1.04407 0.91161 0.84865 0.78735 0.74902 0.79467 1.18493 1.18295 1.18282 1.19091 0.94625 0.89559 1.46422 0.90558 1.19170 0.92831 0.84773 0.91347 1.22200 0.95064 0.94276 1.28771 1.20594 0.91581 0.93506 0.98489 1.19094 0.90415 0.94745 1.02778 1.21879 0.99455 0.93244 0.94652 1.22454 0.91494 1.03298 1.00634 1.23503 1.01176 0.88082 0.94058 1.67737 1.24832 1.15361 1.13215 1.22743 0.86787 1.00497 0.94870 1.76931 0.92817 1.13600 1.36502 1.49841 1.04547 1.05249 1.68956 1.20937 0.73890 0.96687 0.71349 1.93036 1.83395 1.89639 1.52186 1.93038 1.83342 1.89687 1.52196 0.89412 0.82521 0.84223 0.80511 0.78865 0.83482 0.79664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.19 10.29 21.86 0.22 -39.96 15 2 C 0.04 1.81 5.50 85.31 0.47 2.28 15 3 Si 1.00 37.36 29.56 68.60 2.03 39.39 15 4 H -0.26 -9.73 7.11 99.48 0.71 -9.02 15 5 H -0.26 -9.13 7.11 99.48 0.71 -8.42 15 6 H -0.26 -9.12 7.11 99.48 0.71 -8.41 15 7 C -0.46 -24.86 8.96 23.23 0.21 -24.66 15 8 H 0.08 4.03 7.51 -2.91 -0.02 4.01 15 9 C 0.23 12.93 6.67 39.07 0.26 13.19 15 10 C -0.37 -20.34 9.12 22.95 0.21 -20.13 15 11 C 0.12 5.82 6.96 42.19 0.29 6.12 15 12 C -0.07 -2.70 5.89 -19.94 -0.12 -2.81 15 13 C -0.07 -2.12 9.81 22.68 0.22 -1.89 15 14 C -0.16 -3.82 10.10 22.33 0.23 -3.59 15 15 C 0.09 2.25 11.17 84.70 0.95 3.20 15 16 N -0.50 -16.94 10.35 -194.97 -2.02 -18.96 15 17 C 0.11 4.24 10.73 84.96 0.91 5.15 15 18 N -0.38 -18.29 12.24 -48.65 -0.60 -18.89 15 19 N -0.49 -24.32 3.94 -356.14 -1.40 -25.72 15 20 C 0.51 20.31 5.97 127.77 0.76 21.07 15 21 F -0.20 -8.27 17.33 44.97 0.78 -7.49 15 22 F -0.20 -8.27 17.34 44.97 0.78 -7.49 15 23 H 0.29 13.12 8.29 -92.71 -0.77 12.35 15 24 H 0.16 8.75 4.97 -2.91 -0.01 8.74 15 25 H 0.14 4.35 7.91 -2.91 -0.02 4.33 15 26 H 0.18 2.59 8.06 -2.91 -0.02 2.57 15 27 H 0.19 3.10 8.06 -2.91 -0.02 3.08 15 28 H 0.15 6.05 7.01 -2.91 -0.02 6.03 15 29 H 0.19 5.58 8.14 -2.38 -0.02 5.56 15 Total: -1.00 -65.78 273.22 5.39 -60.39 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 1.21 Total: 20.81 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 4.39 Total: -2.07 kcal Atomic # 7 Polarization: -99.74 SS G_CDS: -3.79 Total: -103.54 kcal Atomic # 9 Polarization: -16.55 SS G_CDS: 1.56 Total: -14.99 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 2.03 Total: 39.39 kcal Total: -65.78 5.39 -60.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409443501.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.434 kcal (2) G-P(sol) polarization free energy of solvation -65.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds