Wall clock time and date at job start Mon Mar 30 2020 06:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30773 * 1 3 3 Si 1.86800 * 119.99560 * 2 1 4 4 H 1.48492 * 109.47389 * 270.98611 * 3 2 1 5 5 H 1.48500 * 109.47371 * 30.98821 * 3 2 1 6 6 H 1.48497 * 109.46964 * 150.98528 * 3 2 1 7 7 C 1.40136 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99512 * 344.87606 * 7 2 1 9 9 C 1.40277 * 120.00138 * 164.88062 * 7 2 1 10 10 C 1.39561 * 126.53857 * 339.76376 * 9 7 2 11 11 C 1.39753 * 107.46963 * 180.02562 * 10 9 7 12 12 C 1.48400 * 125.61281 * 179.97438 * 11 10 9 13 13 C 1.39751 * 120.90406 * 359.72053 * 12 11 10 14 14 C 1.37977 * 119.02157 * 179.77578 * 13 12 11 15 15 N 1.31924 * 120.88065 * 0.50871 * 14 13 12 16 16 C 1.31932 * 122.00078 * 359.73631 * 15 14 13 17 17 C 1.37968 * 120.87944 * 0.02562 * 16 15 14 18 18 N 1.32041 * 108.77130 * 359.97438 * 11 10 9 19 19 N 1.37525 * 126.54357 * 159.79343 * 9 7 2 20 20 C 1.46497 * 126.08797 * 359.71680 * 19 9 7 21 21 F 1.39897 * 109.47368 * 210.00039 * 20 19 9 22 22 F 1.39903 * 109.46903 * 329.99569 * 20 19 9 23 23 H 0.97002 * 120.00732 * 0.02562 * 1 2 3 24 24 H 1.08001 * 126.26573 * 0.02562 * 10 9 7 25 25 H 1.07998 * 120.49120 * 0.02562 * 13 12 11 26 26 H 1.08005 * 119.56082 * 180.24855 * 14 13 12 27 27 H 1.07998 * 119.55988 * 180.02562 * 16 15 14 28 28 H 1.08000 * 120.48915 * 179.97438 * 17 16 15 29 29 H 1.08994 * 109.47641 * 89.99742 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 2.4682 2.0586 -1.3998 5 1 1.4496 2.6466 0.7208 6 1 3.5494 1.4344 0.6791 7 6 2.0085 -1.2136 -0.0005 8 1 1.4965 -2.1328 0.2431 9 6 3.3748 -1.2344 -0.3174 10 6 4.0807 -0.2541 -1.0163 11 6 5.4093 -0.6782 -1.1070 12 6 6.5094 0.0629 -1.7723 13 6 6.2749 1.2952 -2.3884 14 6 7.3272 1.9531 -2.9915 15 7 8.5379 1.4291 -2.9998 16 6 8.8004 0.2664 -2.4342 17 6 7.8070 -0.4554 -1.8051 18 7 5.5244 -1.8469 -0.5033 19 7 4.2742 -2.2249 0.0008 20 6 3.9783 -3.4538 0.7414 21 9 5.1154 -3.8567 1.4498 22 9 2.9302 -3.2172 1.6375 23 1 -0.4851 0.8400 -0.0004 24 1 3.6747 0.6641 -1.4142 25 1 5.2855 1.7281 -2.3890 26 1 7.1566 2.9078 -3.4667 27 1 9.8063 -0.1256 -2.4641 28 1 8.0288 -1.4067 -1.3445 29 1 3.6886 -4.2384 0.0426 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409443878.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:51 Heat of formation + Delta-G solvation = 6.448751 kcal Electronic energy + Delta-G solvation = -19301.248953 eV Core-core repulsion = 15861.675437 eV Total energy + Delta-G solvation = -3439.573516 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.072 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.56855 -46.69834 -40.02402 -39.13224 -34.00539 -33.21115 -31.04640 -30.45440 -30.04703 -25.69368 -25.08955 -23.15717 -22.97599 -20.39161 -19.54606 -17.87757 -17.36918 -16.77944 -16.50387 -16.16852 -15.49663 -15.28492 -14.64722 -13.89159 -13.76984 -13.54874 -13.45452 -13.36479 -13.22589 -12.98485 -12.71500 -12.21937 -11.89207 -11.49680 -11.37329 -11.25841 -10.62502 -10.11334 -9.97058 -9.48204 -9.42487 -9.28658 -8.92080 -8.16055 -7.62211 -7.20186 -4.90649 1.25245 1.40526 2.67667 2.89696 3.02913 3.15593 3.26131 3.67238 3.85081 4.11931 4.33901 4.65537 4.70933 4.82039 5.06006 5.11806 5.21432 5.41224 5.42760 5.87640 5.98218 6.15974 6.33339 6.36846 6.66066 6.86015 6.93518 7.03089 7.38182 7.63917 7.97074 8.16764 8.17723 8.45311 8.80787 9.79824 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.016923 B = 0.008222 C = 0.005710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.159135 B = 3404.567231 C = 4902.893235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.100 3.900 3 Si 0.918 3.082 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.241 1.241 7 C -0.435 4.435 8 H 0.102 0.898 9 C 0.268 3.732 10 C -0.402 4.402 11 C 0.130 3.870 12 C 0.055 3.945 13 C -0.155 4.155 14 C 0.093 3.907 15 N -0.496 5.496 16 C 0.091 3.909 17 C -0.153 4.153 18 N -0.342 5.342 19 N -0.476 5.476 20 C 0.524 3.476 21 F -0.192 7.192 22 F -0.179 7.179 23 H 0.293 0.707 24 H 0.128 0.872 25 H 0.136 0.864 26 H 0.155 0.845 27 H 0.153 0.847 28 H 0.139 0.861 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.665 0.048 -2.274 7.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.124 4.124 3 Si 0.745 3.255 4 H -0.191 1.191 5 H -0.219 1.219 6 H -0.164 1.164 7 C -0.470 4.470 8 H 0.120 0.880 9 C 0.154 3.846 10 C -0.433 4.433 11 C -0.031 4.031 12 C 0.045 3.955 13 C -0.177 4.177 14 C -0.063 4.063 15 N -0.206 5.206 16 C -0.065 4.065 17 C -0.174 4.174 18 N -0.164 5.164 19 N -0.273 5.273 20 C 0.389 3.611 21 F -0.174 7.174 22 F -0.161 7.161 23 H 0.104 0.896 24 H 0.146 0.854 25 H 0.154 0.846 26 H 0.172 0.828 27 H 0.170 0.830 28 H 0.157 0.843 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.858 -0.533 -2.223 8.184 hybrid contribution -1.254 0.794 0.434 1.547 sum 6.604 0.261 -1.790 6.847 Atomic orbital electron populations 1.69560 1.08042 1.31069 1.32638 1.25945 0.94789 1.01584 0.90058 0.86221 0.80882 0.78817 0.79608 1.19068 1.21876 1.16379 1.18684 0.89603 0.97190 1.41524 0.88040 1.18625 0.90330 0.84840 0.90850 1.21000 0.93325 1.05964 1.22987 1.19900 0.92504 0.93189 0.97467 1.18414 0.91519 0.92546 0.93057 1.22199 1.01218 0.95307 0.98970 1.22577 0.87817 0.99326 0.96592 1.67581 1.22793 1.12403 1.17789 1.22600 0.99242 0.90632 0.94047 1.22275 0.92823 1.01744 1.00568 1.77203 0.99818 1.15826 1.23530 1.49557 1.07651 1.19807 1.50327 1.20706 0.72915 0.85491 0.82026 1.93029 1.53426 1.90209 1.80701 1.93116 1.57552 1.95119 1.70304 0.89649 0.85450 0.84566 0.82819 0.82957 0.84297 0.85359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.49 13.93 55.56 0.77 -18.72 15 2 C 0.10 2.46 5.51 -17.29 -0.10 2.37 15 3 Si 0.92 19.83 24.54 -169.99 -4.17 15.66 15 4 H -0.26 -5.42 6.68 56.52 0.38 -5.05 15 5 H -0.29 -6.04 7.11 56.52 0.40 -5.64 15 6 H -0.24 -5.50 6.57 56.52 0.37 -5.13 15 7 C -0.44 -11.02 8.81 -38.10 -0.34 -11.35 15 8 H 0.10 2.63 7.01 -52.49 -0.37 2.26 15 9 C 0.27 6.62 6.20 -84.05 -0.52 6.10 15 10 C -0.40 -9.54 7.50 -38.52 -0.29 -9.83 15 11 C 0.13 2.92 6.97 -83.03 -0.58 2.34 15 12 C 0.05 1.04 5.91 -104.58 -0.62 0.42 15 13 C -0.16 -2.59 9.64 -39.11 -0.38 -2.97 15 14 C 0.09 1.36 11.17 -17.61 -0.20 1.17 15 15 N -0.50 -7.65 10.35 -13.34 -0.14 -7.79 15 16 C 0.09 1.32 11.17 -17.61 -0.20 1.13 15 17 C -0.15 -2.52 9.78 -39.11 -0.38 -2.90 15 18 N -0.34 -7.91 12.09 33.27 0.40 -7.51 15 19 N -0.48 -11.00 4.05 -63.93 -0.26 -11.26 15 20 C 0.52 10.03 6.58 59.85 0.39 10.42 15 21 F -0.19 -3.65 17.36 2.25 0.04 -3.61 15 22 F -0.18 -3.64 15.19 2.25 0.03 -3.61 15 23 H 0.29 6.50 8.30 -40.82 -0.34 6.16 15 24 H 0.13 2.91 3.62 -52.49 -0.19 2.72 15 25 H 0.14 2.18 7.13 -52.49 -0.37 1.81 15 26 H 0.15 1.73 8.06 -52.48 -0.42 1.31 15 27 H 0.15 1.69 8.06 -52.49 -0.42 1.27 15 28 H 0.14 2.22 7.92 -52.49 -0.42 1.80 15 29 H 0.13 1.94 8.14 -51.93 -0.42 1.52 15 LS Contribution 265.32 15.07 4.00 4.00 Total: -1.00 -28.59 265.32 -4.32 -32.91 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -1.80 Total: 3.04 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -3.20 Total: -3.11 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.78 Total: -45.27 kcal Atomic # 9 Polarization: -7.29 SS G_CDS: 0.07 Total: -7.22 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.17 Total: 15.66 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -28.59 -4.32 -32.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409443878.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.362 kcal (2) G-P(sol) polarization free energy of solvation -28.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds