Wall clock time and date at job start Mon Mar 30 2020 06:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30773 * 1 3 3 Si 1.86800 * 119.99560 * 2 1 4 4 H 1.48492 * 109.47389 * 270.98611 * 3 2 1 5 5 H 1.48500 * 109.47371 * 30.98821 * 3 2 1 6 6 H 1.48497 * 109.46964 * 150.98528 * 3 2 1 7 7 C 1.40136 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99512 * 344.87606 * 7 2 1 9 9 C 1.40277 * 120.00138 * 164.88062 * 7 2 1 10 10 C 1.39561 * 126.53857 * 339.76376 * 9 7 2 11 11 C 1.39753 * 107.46963 * 180.02562 * 10 9 7 12 12 C 1.48400 * 125.61281 * 179.97438 * 11 10 9 13 13 C 1.39751 * 120.90406 * 359.72053 * 12 11 10 14 14 C 1.37977 * 119.02157 * 179.77578 * 13 12 11 15 15 N 1.31924 * 120.88065 * 0.50871 * 14 13 12 16 16 C 1.31932 * 122.00078 * 359.73631 * 15 14 13 17 17 C 1.37968 * 120.87944 * 0.02562 * 16 15 14 18 18 N 1.32041 * 108.77130 * 359.97438 * 11 10 9 19 19 N 1.37525 * 126.54357 * 159.79343 * 9 7 2 20 20 C 1.46497 * 126.08797 * 359.71680 * 19 9 7 21 21 F 1.39897 * 109.47368 * 210.00039 * 20 19 9 22 22 F 1.39903 * 109.46903 * 329.99569 * 20 19 9 23 23 H 0.97002 * 120.00732 * 0.02562 * 1 2 3 24 24 H 1.08001 * 126.26573 * 0.02562 * 10 9 7 25 25 H 1.07998 * 120.49120 * 0.02562 * 13 12 11 26 26 H 1.08005 * 119.56082 * 180.24855 * 14 13 12 27 27 H 1.07998 * 119.55988 * 180.02562 * 16 15 14 28 28 H 1.08000 * 120.48915 * 179.97438 * 17 16 15 29 29 H 1.08994 * 109.47641 * 89.99742 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 2.4682 2.0586 -1.3998 5 1 1.4496 2.6466 0.7208 6 1 3.5494 1.4344 0.6791 7 6 2.0085 -1.2136 -0.0005 8 1 1.4965 -2.1328 0.2431 9 6 3.3748 -1.2344 -0.3174 10 6 4.0807 -0.2541 -1.0163 11 6 5.4093 -0.6782 -1.1070 12 6 6.5094 0.0629 -1.7723 13 6 6.2749 1.2952 -2.3884 14 6 7.3272 1.9531 -2.9915 15 7 8.5379 1.4291 -2.9998 16 6 8.8004 0.2664 -2.4342 17 6 7.8070 -0.4554 -1.8051 18 7 5.5244 -1.8469 -0.5033 19 7 4.2742 -2.2249 0.0008 20 6 3.9783 -3.4538 0.7414 21 9 5.1154 -3.8567 1.4498 22 9 2.9302 -3.2172 1.6375 23 1 -0.4851 0.8400 -0.0004 24 1 3.6747 0.6641 -1.4142 25 1 5.2855 1.7281 -2.3890 26 1 7.1566 2.9078 -3.4667 27 1 9.8063 -0.1256 -2.4641 28 1 8.0288 -1.4067 -1.3445 29 1 3.6886 -4.2384 0.0426 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409443878.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:51 Heat of formation + Delta-G solvation = -11.938830 kcal Electronic energy + Delta-G solvation = -19302.046299 eV Core-core repulsion = 15861.675437 eV Total energy + Delta-G solvation = -3440.370861 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.072 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.12992 -48.26271 -41.55784 -40.58243 -35.81436 -34.71498 -32.32473 -31.97604 -31.79675 -27.41106 -26.71371 -24.58029 -24.23995 -22.14148 -21.06888 -19.67317 -18.91809 -18.38669 -18.09627 -17.60251 -16.86278 -16.54462 -16.27090 -15.55222 -15.42426 -15.08489 -15.04282 -14.68619 -14.57527 -14.51056 -14.31353 -13.90374 -13.62668 -13.09523 -12.99374 -12.63494 -12.43119 -11.80768 -11.59448 -11.24652 -11.12722 -10.50824 -10.09524 -9.84179 -9.39183 -9.04723 -6.80176 -0.12254 0.22255 0.91725 1.25707 1.28421 1.45471 1.52715 2.04293 2.12884 2.63954 2.90461 3.05575 3.14420 3.57448 3.64386 3.72689 3.90837 4.14566 4.19471 4.55553 4.64420 4.67586 4.86837 4.94843 4.95752 5.20356 5.40305 5.60238 5.74601 5.92113 6.04526 6.31855 6.60712 6.99117 7.01983 8.00476 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.016923 B = 0.008222 C = 0.005710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.159135 B = 3404.567231 C = 4902.893235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.071 3.929 3 Si 0.963 3.037 4 H -0.246 1.246 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.458 4.458 8 H 0.083 0.917 9 C 0.254 3.746 10 C -0.416 4.416 11 C 0.129 3.871 12 C 0.021 3.979 13 C -0.161 4.161 14 C 0.103 3.897 15 N -0.501 5.501 16 C 0.101 3.899 17 C -0.156 4.156 18 N -0.352 5.352 19 N -0.487 5.487 20 C 0.517 3.483 21 F -0.192 7.192 22 F -0.189 7.189 23 H 0.304 0.696 24 H 0.134 0.866 25 H 0.139 0.861 26 H 0.191 0.809 27 H 0.189 0.811 28 H 0.139 0.861 29 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.355 1.185 -3.307 9.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.151 4.151 3 Si 0.787 3.213 4 H -0.171 1.171 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.493 4.493 8 H 0.101 0.899 9 C 0.138 3.862 10 C -0.446 4.446 11 C -0.033 4.033 12 C 0.011 3.989 13 C -0.183 4.183 14 C -0.053 4.053 15 N -0.211 5.211 16 C -0.055 4.055 17 C -0.177 4.177 18 N -0.173 5.173 19 N -0.284 5.284 20 C 0.383 3.617 21 F -0.173 7.173 22 F -0.171 7.171 23 H 0.115 0.885 24 H 0.151 0.849 25 H 0.156 0.844 26 H 0.208 0.792 27 H 0.206 0.794 28 H 0.157 0.843 29 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 9.529 0.587 -3.254 10.087 hybrid contribution -1.657 0.399 0.740 1.858 sum 7.872 0.986 -2.514 8.323 Atomic orbital electron populations 1.69558 1.08767 1.32399 1.33433 1.26510 0.95347 1.03560 0.89642 0.85542 0.78845 0.76432 0.80433 1.17079 1.20255 1.18764 1.18682 0.90186 0.97138 1.43304 0.89859 1.18744 0.90373 0.85893 0.91166 1.21225 0.94079 1.06202 1.23123 1.20408 0.93202 0.92853 0.96797 1.18545 0.91609 0.93781 0.94956 1.22330 1.02133 0.94723 0.99087 1.23104 0.86836 1.00113 0.95284 1.67721 1.23022 1.12644 1.17728 1.23116 1.00223 0.89880 0.92260 1.22352 0.92388 1.02047 1.00927 1.77138 1.00064 1.16388 1.23758 1.49922 1.07383 1.20643 1.50482 1.21417 0.72630 0.85313 0.82338 1.93024 1.53511 1.89971 1.80819 1.93095 1.58008 1.95184 1.70807 0.88526 0.84870 0.84354 0.79230 0.79369 0.84281 0.80862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.63 13.93 21.86 0.30 -40.33 15 2 C 0.07 3.51 5.51 85.31 0.47 3.98 15 3 Si 0.96 40.39 24.54 68.60 1.68 42.08 15 4 H -0.25 -9.47 6.68 99.48 0.66 -8.80 15 5 H -0.28 -10.76 7.11 99.48 0.71 -10.06 15 6 H -0.26 -11.93 6.57 99.48 0.65 -11.28 15 7 C -0.46 -23.71 8.81 23.23 0.20 -23.51 15 8 H 0.08 4.48 7.01 -2.91 -0.02 4.46 15 9 C 0.25 12.67 6.20 39.07 0.24 12.92 15 10 C -0.42 -19.73 7.50 22.96 0.17 -19.56 15 11 C 0.13 5.75 6.97 42.19 0.29 6.04 15 12 C 0.02 0.77 5.91 -19.84 -0.12 0.65 15 13 C -0.16 -5.04 9.64 22.57 0.22 -4.83 15 14 C 0.10 2.66 11.17 84.62 0.95 3.61 15 15 N -0.50 -13.68 10.35 -196.13 -2.03 -15.71 15 16 C 0.10 2.61 11.17 84.61 0.95 3.55 15 17 C -0.16 -4.85 9.78 22.57 0.22 -4.63 15 18 N -0.35 -16.19 12.09 -48.65 -0.59 -16.78 15 19 N -0.49 -22.53 4.05 -356.16 -1.44 -23.97 15 20 C 0.52 19.61 6.58 127.77 0.84 20.45 15 21 F -0.19 -7.17 17.36 44.97 0.78 -6.39 15 22 F -0.19 -7.80 15.19 44.97 0.68 -7.11 15 23 H 0.30 13.43 8.30 -92.71 -0.77 12.66 15 24 H 0.13 6.00 3.62 -2.91 -0.01 5.99 15 25 H 0.14 4.19 7.13 -2.91 -0.02 4.17 15 26 H 0.19 3.44 8.06 -2.91 -0.02 3.42 15 27 H 0.19 3.39 8.06 -2.91 -0.02 3.37 15 28 H 0.14 4.24 7.92 -2.91 -0.02 4.22 15 29 H 0.18 5.02 8.14 -2.39 -0.02 5.00 15 Total: -1.00 -61.34 265.32 4.94 -56.40 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 1.12 Total: 13.14 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 4.43 Total: -1.32 kcal Atomic # 7 Polarization: -93.03 SS G_CDS: -3.76 Total: -96.79 kcal Atomic # 9 Polarization: -14.97 SS G_CDS: 1.46 Total: -13.50 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 1.68 Total: 42.08 kcal Total: -61.34 4.94 -56.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409443878.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.457 kcal (2) G-P(sol) polarization free energy of solvation -61.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds