Wall clock time and date at job start Mon Mar 30 2020 06:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30774 * 1 3 3 Si 1.86801 * 119.99961 * 2 1 4 4 H 1.48495 * 109.46846 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47191 * 300.00122 * 3 2 1 6 6 H 1.48504 * 109.46932 * 60.00404 * 3 2 1 7 7 C 1.40142 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00042 * 179.97438 * 7 2 1 9 9 C 1.40288 * 119.99787 * 0.02562 * 7 2 1 10 10 C 1.39556 * 126.54127 * 359.97188 * 9 7 2 11 11 C 1.39757 * 107.47078 * 180.02562 * 10 9 7 12 12 C 1.48374 * 125.61803 * 179.97438 * 11 10 9 13 13 C 1.39331 * 119.72945 * 180.02562 * 12 11 10 14 14 C 1.38389 * 119.06765 * 180.25740 * 13 12 11 15 15 C 1.38794 * 118.51369 * 359.50188 * 14 13 12 16 16 C 1.38238 * 119.36075 * 0.48039 * 15 14 13 17 17 N 1.31770 * 120.89494 * 359.76576 * 16 15 14 18 18 N 1.32052 * 108.76771 * 0.26105 * 11 10 9 19 19 N 1.37530 * 126.53762 * 179.97438 * 9 7 2 20 20 C 1.46499 * 126.08521 * 359.97438 * 19 9 7 21 21 F 1.39895 * 109.46938 * 210.00115 * 20 19 9 22 22 F 1.39900 * 109.47287 * 329.99899 * 20 19 9 23 23 H 0.97000 * 120.00008 * 359.97438 * 1 2 3 24 24 H 1.08003 * 126.26580 * 359.97438 * 10 9 7 25 25 H 1.08002 * 120.46227 * 359.97438 * 13 12 11 26 26 H 1.08008 * 120.74157 * 179.72474 * 14 13 12 27 27 H 1.08000 * 120.31594 * 180.22327 * 15 14 13 28 28 H 1.08002 * 119.54993 * 179.74536 * 16 15 14 29 29 H 1.08995 * 109.47626 * 90.00032 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 3.7017 1.3463 0.0006 5 1 1.8830 2.3964 -1.2124 6 1 1.8830 2.3964 1.2126 7 6 2.0085 -1.2137 0.0005 8 1 3.0884 -1.2137 0.0001 9 6 1.3070 -2.4286 0.0005 10 6 -0.0795 -2.5875 0.0006 11 6 -0.3445 -3.9597 0.0012 12 6 -1.6927 -4.5794 0.0020 13 6 -1.8151 -5.9673 0.0030 14 6 -3.0791 -6.5308 -0.0017 15 6 -4.1808 -5.6866 0.0033 16 6 -3.9861 -4.3180 0.0026 17 7 -2.7713 -3.8075 0.0020 18 7 0.8025 -4.6140 0.0072 19 7 1.8545 -3.6902 0.0005 20 6 3.2841 -4.0104 0.0000 21 9 3.4892 -5.2270 -0.6594 22 9 3.9886 -2.9978 -0.6600 23 1 -0.4850 0.8400 0.0004 24 1 -0.8134 -1.7951 0.0010 25 1 -0.9359 -6.5946 0.0029 26 1 -3.2054 -7.6034 -0.0055 27 1 -5.1806 -6.0951 0.0034 28 1 -4.8412 -3.6583 0.0023 29 1 3.6391 -4.0896 1.0275 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409443936.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:43 Heat of formation + Delta-G solvation = 9.326631 kcal Electronic energy + Delta-G solvation = -19188.720370 eV Core-core repulsion = 15749.271648 eV Total energy + Delta-G solvation = -3439.448722 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.072 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.44927 -46.58425 -39.72296 -38.71450 -33.85177 -32.41480 -31.89637 -29.78353 -28.92323 -25.51138 -24.93755 -22.91951 -22.77641 -19.85057 -19.31200 -17.82563 -17.20783 -16.56320 -16.16704 -16.01179 -15.30529 -15.11250 -14.47286 -13.71622 -13.58311 -13.40519 -13.04010 -12.95805 -12.85045 -12.57893 -12.27076 -11.91418 -11.60720 -11.46413 -11.34722 -11.14913 -10.55347 -9.90419 -9.71634 -9.48888 -9.16907 -9.07842 -8.75717 -7.77148 -7.09614 -6.75292 -4.61852 1.35421 1.70598 2.83437 3.02014 3.07991 3.17734 3.35126 3.85948 4.03192 4.25466 4.72171 4.74576 5.09840 5.12310 5.13691 5.25737 5.41743 5.43518 5.57964 5.99963 6.16157 6.40933 6.53287 6.94238 7.02756 7.05999 7.15232 7.59971 7.83339 8.26365 8.42106 8.52380 8.68319 8.93979 9.26040 10.11593 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.017620 B = 0.007149 C = 0.005122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.719681 B = 3915.877790 C = 5464.968844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.075 3.925 3 Si 0.928 3.072 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.443 4.443 8 H 0.090 0.910 9 C 0.255 3.745 10 C -0.308 4.308 11 C 0.106 3.894 12 C 0.232 3.768 13 C -0.155 4.155 14 C -0.082 4.082 15 C -0.192 4.192 16 C 0.099 3.901 17 N -0.462 5.462 18 N -0.363 5.363 19 N -0.478 5.478 20 C 0.524 3.476 21 F -0.196 7.196 22 F -0.186 7.186 23 H 0.282 0.718 24 H 0.176 0.824 25 H 0.138 0.862 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.153 0.847 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.289 -5.079 1.390 5.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.147 4.147 3 Si 0.752 3.248 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.479 4.479 8 H 0.108 0.892 9 C 0.140 3.860 10 C -0.340 4.340 11 C -0.051 4.051 12 C 0.094 3.906 13 C -0.177 4.177 14 C -0.108 4.108 15 C -0.213 4.213 16 C -0.060 4.060 17 N -0.171 5.171 18 N -0.188 5.188 19 N -0.276 5.276 20 C 0.387 3.613 21 F -0.178 7.178 22 F -0.168 7.168 23 H 0.094 0.906 24 H 0.193 0.807 25 H 0.156 0.844 26 H 0.147 0.853 27 H 0.146 0.854 28 H 0.170 0.830 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.676 -5.227 1.360 5.655 hybrid contribution -0.040 0.514 -0.201 0.553 sum -1.715 -4.713 1.159 5.147 Atomic orbital electron populations 1.69735 1.07458 1.29046 1.33469 1.25861 0.94950 1.01378 0.92493 0.85935 0.80421 0.79814 0.78677 1.18336 1.19636 1.19660 1.19052 0.95114 0.88325 1.45362 0.89204 1.18818 0.91927 0.82951 0.92315 1.22314 0.94514 0.93606 1.23600 1.19917 0.89168 0.94404 1.01641 1.18890 0.90294 0.88711 0.92691 1.22176 0.98329 0.95885 1.01264 1.21455 0.92388 1.00010 0.96962 1.22063 0.99447 0.95235 1.04567 1.22703 0.94551 0.93047 0.95655 1.67631 0.98117 1.40297 1.11078 1.77149 0.92504 1.13190 1.35953 1.49660 1.03073 1.06202 1.68697 1.20717 0.77793 0.71104 0.91662 1.93015 1.94501 1.45976 1.84261 1.93052 1.78032 1.61476 1.84237 0.90609 0.80739 0.84445 0.85325 0.85434 0.83023 0.85624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.60 10.29 55.56 0.57 -19.03 15 2 C 0.07 1.82 5.50 -17.29 -0.10 1.73 15 3 Si 0.93 18.22 29.56 -169.99 -5.03 13.19 15 4 H -0.26 -5.03 7.11 56.52 0.40 -4.63 15 5 H -0.27 -5.26 7.11 56.52 0.40 -4.86 15 6 H -0.27 -5.20 7.11 56.52 0.40 -4.80 15 7 C -0.44 -11.45 8.71 -38.10 -0.33 -11.79 15 8 H 0.09 2.20 6.03 -52.49 -0.32 1.88 15 9 C 0.25 6.89 6.66 -84.05 -0.56 6.33 15 10 C -0.31 -8.52 9.46 -38.52 -0.36 -8.89 15 11 C 0.11 2.72 6.96 -83.03 -0.58 2.14 15 12 C 0.23 5.12 6.75 -82.94 -0.56 4.56 15 13 C -0.16 -2.84 9.72 -39.12 -0.38 -3.22 15 14 C -0.08 -1.19 10.17 -39.32 -0.40 -1.59 15 15 C -0.19 -2.62 10.11 -39.38 -0.40 -3.01 15 16 C 0.10 1.59 11.17 -17.58 -0.20 1.39 15 17 N -0.46 -9.70 10.05 -9.77 -0.10 -9.80 15 18 N -0.36 -9.21 11.98 33.27 0.40 -8.81 15 19 N -0.48 -11.95 4.05 -63.92 -0.26 -12.21 15 20 C 0.52 10.62 6.58 59.85 0.39 11.01 15 21 F -0.20 -3.95 17.36 2.25 0.04 -3.91 15 22 F -0.19 -3.86 14.86 2.25 0.03 -3.83 15 23 H 0.28 6.46 8.29 -40.82 -0.34 6.12 15 24 H 0.18 5.04 5.71 -52.48 -0.30 4.74 15 25 H 0.14 2.47 7.82 -52.49 -0.41 2.06 15 26 H 0.13 1.40 8.06 -52.48 -0.42 0.98 15 27 H 0.13 1.26 8.06 -52.49 -0.42 0.84 15 28 H 0.15 1.92 8.06 -52.49 -0.42 1.50 15 29 H 0.13 2.04 8.14 -51.93 -0.42 1.62 15 LS Contribution 271.42 15.07 4.09 4.09 Total: -1.00 -30.63 271.42 -5.57 -36.20 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -1.85 Total: 5.44 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -3.47 Total: -1.32 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.61 Total: -49.86 kcal Atomic # 9 Polarization: -7.81 SS G_CDS: 0.07 Total: -7.74 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.19 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.63 -5.57 -36.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409443936.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.524 kcal (2) G-P(sol) polarization free energy of solvation -30.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds