Wall clock time and date at job start Mon Mar 30 2020 06:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30774 * 1 3 3 Si 1.86801 * 119.99961 * 2 1 4 4 H 1.48495 * 109.46846 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47191 * 300.00122 * 3 2 1 6 6 H 1.48504 * 109.46932 * 60.00404 * 3 2 1 7 7 C 1.40142 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00042 * 179.97438 * 7 2 1 9 9 C 1.40288 * 119.99787 * 0.02562 * 7 2 1 10 10 C 1.39556 * 126.54127 * 359.97188 * 9 7 2 11 11 C 1.39757 * 107.47078 * 180.02562 * 10 9 7 12 12 C 1.48374 * 125.61803 * 179.97438 * 11 10 9 13 13 C 1.39331 * 119.72945 * 180.02562 * 12 11 10 14 14 C 1.38389 * 119.06765 * 180.25740 * 13 12 11 15 15 C 1.38794 * 118.51369 * 359.50188 * 14 13 12 16 16 C 1.38238 * 119.36075 * 0.48039 * 15 14 13 17 17 N 1.31770 * 120.89494 * 359.76576 * 16 15 14 18 18 N 1.32052 * 108.76771 * 0.26105 * 11 10 9 19 19 N 1.37530 * 126.53762 * 179.97438 * 9 7 2 20 20 C 1.46499 * 126.08521 * 359.97438 * 19 9 7 21 21 F 1.39895 * 109.46938 * 210.00115 * 20 19 9 22 22 F 1.39900 * 109.47287 * 329.99899 * 20 19 9 23 23 H 0.97000 * 120.00008 * 359.97438 * 1 2 3 24 24 H 1.08003 * 126.26580 * 359.97438 * 10 9 7 25 25 H 1.08002 * 120.46227 * 359.97438 * 13 12 11 26 26 H 1.08008 * 120.74157 * 179.72474 * 14 13 12 27 27 H 1.08000 * 120.31594 * 180.22327 * 15 14 13 28 28 H 1.08002 * 119.54993 * 179.74536 * 16 15 14 29 29 H 1.08995 * 109.47626 * 90.00032 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 3.7017 1.3463 0.0006 5 1 1.8830 2.3964 -1.2124 6 1 1.8830 2.3964 1.2126 7 6 2.0085 -1.2137 0.0005 8 1 3.0884 -1.2137 0.0001 9 6 1.3070 -2.4286 0.0005 10 6 -0.0795 -2.5875 0.0006 11 6 -0.3445 -3.9597 0.0012 12 6 -1.6927 -4.5794 0.0020 13 6 -1.8151 -5.9673 0.0030 14 6 -3.0791 -6.5308 -0.0017 15 6 -4.1808 -5.6866 0.0033 16 6 -3.9861 -4.3180 0.0026 17 7 -2.7713 -3.8075 0.0020 18 7 0.8025 -4.6140 0.0072 19 7 1.8545 -3.6902 0.0005 20 6 3.2841 -4.0104 0.0000 21 9 3.4892 -5.2270 -0.6594 22 9 3.9886 -2.9978 -0.6600 23 1 -0.4850 0.8400 0.0004 24 1 -0.8134 -1.7951 0.0010 25 1 -0.9359 -6.5946 0.0029 26 1 -3.2054 -7.6034 -0.0055 27 1 -5.1806 -6.0951 0.0034 28 1 -4.8412 -3.6583 0.0023 29 1 3.6391 -4.0896 1.0275 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409443936.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:43 Heat of formation + Delta-G solvation = -10.778438 kcal Electronic energy + Delta-G solvation = -19189.592191 eV Core-core repulsion = 15749.271648 eV Total energy + Delta-G solvation = -3440.320543 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.072 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.08291 -48.21741 -41.28122 -40.38199 -35.73798 -33.98245 -33.28574 -31.30126 -30.85326 -27.39975 -26.58312 -24.31553 -24.21440 -21.73145 -20.94969 -19.67113 -18.82169 -18.13848 -17.82194 -17.57338 -16.71165 -16.59939 -16.00365 -15.34896 -15.12683 -15.04486 -14.72075 -14.56555 -14.32926 -14.15484 -13.80184 -13.75866 -13.40461 -13.07359 -12.91621 -12.56529 -12.14119 -11.76009 -11.42814 -11.02572 -10.86062 -10.62720 -10.21775 -9.49647 -9.00577 -8.59941 -6.60874 -0.04140 0.45309 1.14883 1.38654 1.49117 1.59954 1.67450 2.20623 2.33163 2.68402 3.09814 3.19480 3.30592 3.57881 3.81291 3.91977 4.08290 4.25875 4.28805 4.68560 4.90752 5.02724 5.11616 5.17875 5.28105 5.34425 5.63536 5.84010 5.94162 6.32279 6.46584 6.71235 6.94381 7.14049 7.36700 8.29745 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.017620 B = 0.007149 C = 0.005122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.719681 B = 3915.877790 C = 5464.968844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.031 3.969 3 Si 1.006 2.994 4 H -0.253 1.253 5 H -0.265 1.265 6 H -0.261 1.261 7 C -0.466 4.466 8 H 0.099 0.901 9 C 0.234 3.766 10 C -0.353 4.353 11 C 0.104 3.896 12 C 0.182 3.818 13 C -0.161 4.161 14 C -0.072 4.072 15 C -0.162 4.162 16 C 0.086 3.914 17 N -0.504 5.504 18 N -0.372 5.372 19 N -0.492 5.492 20 C 0.518 3.482 21 F -0.196 7.196 22 F -0.190 7.190 23 H 0.291 0.709 24 H 0.155 0.845 25 H 0.132 0.868 26 H 0.175 0.825 27 H 0.181 0.819 28 H 0.183 0.817 29 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.315 -5.850 1.662 6.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.187 4.187 3 Si 0.825 3.175 4 H -0.176 1.176 5 H -0.190 1.190 6 H -0.185 1.185 7 C -0.501 4.501 8 H 0.117 0.883 9 C 0.119 3.881 10 C -0.384 4.384 11 C -0.055 4.055 12 C 0.046 3.954 13 C -0.182 4.182 14 C -0.097 4.097 15 C -0.182 4.182 16 C -0.073 4.073 17 N -0.215 5.215 18 N -0.197 5.197 19 N -0.291 5.291 20 C 0.384 3.616 21 F -0.178 7.178 22 F -0.172 7.172 23 H 0.102 0.898 24 H 0.172 0.828 25 H 0.150 0.850 26 H 0.192 0.808 27 H 0.198 0.802 28 H 0.200 0.800 29 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -2.680 -6.026 1.632 6.794 hybrid contribution 0.084 0.648 -0.303 0.720 sum -2.596 -5.378 1.329 6.118 Atomic orbital electron populations 1.69846 1.09169 1.30513 1.33316 1.26954 0.95735 1.04818 0.91234 0.84803 0.79050 0.74628 0.79064 1.17580 1.19014 1.18516 1.19427 0.95685 0.88785 1.46233 0.88314 1.19134 0.92333 0.84178 0.92448 1.22251 0.94902 0.94391 1.26903 1.20489 0.91073 0.93925 0.99978 1.18799 0.89173 0.90327 0.97118 1.22208 1.00302 0.94172 1.01519 1.21968 0.90641 1.02417 0.94715 1.22622 1.01623 0.93809 1.00156 1.23375 0.93592 0.95323 0.95020 1.67495 0.99582 1.41952 1.12424 1.77013 0.92791 1.13712 1.36181 1.49975 1.04585 1.05557 1.69007 1.21415 0.75947 0.70802 0.93486 1.93007 1.94277 1.45929 1.84574 1.93032 1.77789 1.61779 1.84606 0.89792 0.82813 0.84977 0.80764 0.80167 0.80014 0.80988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -42.38 10.29 21.86 0.22 -42.16 15 2 C 0.03 1.54 5.50 85.31 0.47 2.01 15 3 Si 1.01 37.26 29.56 68.60 2.03 39.28 15 4 H -0.25 -8.99 7.11 99.48 0.71 -8.28 15 5 H -0.27 -9.52 7.11 99.48 0.71 -8.81 15 6 H -0.26 -9.15 7.11 99.48 0.71 -8.44 15 7 C -0.47 -24.79 8.71 23.23 0.20 -24.59 15 8 H 0.10 4.90 6.03 -2.91 -0.02 4.88 15 9 C 0.23 13.25 6.66 39.07 0.26 13.51 15 10 C -0.35 -20.73 9.46 22.96 0.22 -20.52 15 11 C 0.10 5.63 6.96 42.18 0.29 5.93 15 12 C 0.18 8.31 6.75 41.99 0.28 8.59 15 13 C -0.16 -5.80 9.72 22.57 0.22 -5.58 15 14 C -0.07 -1.81 10.17 22.44 0.23 -1.58 15 15 C -0.16 -3.69 10.11 22.40 0.23 -3.46 15 16 C 0.09 2.58 11.17 84.70 0.95 3.53 15 17 N -0.50 -21.65 10.05 -184.84 -1.86 -23.51 15 18 N -0.37 -19.63 11.98 -48.66 -0.58 -20.22 15 19 N -0.49 -25.38 4.05 -356.15 -1.44 -26.82 15 20 C 0.52 21.03 6.58 127.77 0.84 21.87 15 21 F -0.20 -7.89 17.36 44.97 0.78 -7.11 15 22 F -0.19 -7.90 14.86 44.97 0.67 -7.24 15 23 H 0.29 13.71 8.29 -92.71 -0.77 12.94 15 24 H 0.15 9.55 5.71 -2.91 -0.02 9.53 15 25 H 0.13 4.77 7.82 -2.91 -0.02 4.75 15 26 H 0.17 2.81 8.06 -2.91 -0.02 2.79 15 27 H 0.18 2.28 8.06 -2.91 -0.02 2.25 15 28 H 0.18 4.13 8.06 -2.91 -0.02 4.11 15 29 H 0.17 5.39 8.14 -2.39 -0.02 5.37 15 Total: -1.00 -72.18 271.42 5.21 -66.97 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 1.21 Total: 21.08 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: 4.19 Total: -0.29 kcal Atomic # 7 Polarization: -109.04 SS G_CDS: -3.66 Total: -112.70 kcal Atomic # 9 Polarization: -15.80 SS G_CDS: 1.45 Total: -14.35 kcal Atomic # 14 Polarization: 37.26 SS G_CDS: 2.03 Total: 39.28 kcal Total: -72.18 5.21 -66.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409443936.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.192 kcal (2) G-P(sol) polarization free energy of solvation -72.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds