Wall clock time and date at job start Mon Mar 30 2020 06:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35993 * 117.00032 * 2 1 4 4 C 1.38436 * 120.08734 * 359.97438 * 3 2 1 5 5 C 1.38853 * 120.64877 * 179.97438 * 4 3 2 6 6 C 1.36554 * 120.62461 * 0.06386 * 5 4 3 7 7 Cl 1.73599 * 120.07080 * 179.97438 * 6 5 4 8 8 C 1.40691 * 119.86686 * 359.91504 * 6 5 4 9 9 C 1.40904 * 133.05112 * 180.02562 * 8 6 5 10 10 C 1.39141 * 107.53357 * 180.02562 * 9 8 6 11 11 C 1.39937 * 125.70106 * 179.74061 * 10 9 8 12 12 H 1.08005 * 120.00134 * 160.64244 * 11 10 9 13 13 C 1.40152 * 120.00136 * 340.63943 * 11 10 9 14 14 N 1.30764 * 120.00288 * 162.69263 * 13 11 10 15 15 Si 1.86803 * 119.99639 * 342.68871 * 13 11 10 16 16 H 1.48499 * 109.46851 * 93.11354 * 15 13 11 17 17 H 1.48500 * 109.46939 * 213.10587 * 15 13 11 18 18 H 1.48497 * 109.47459 * 333.11023 * 15 13 11 19 19 N 1.38269 * 108.59801 * 359.97438 * 10 9 8 20 20 C 1.46500 * 125.62785 * 179.97438 * 19 10 9 21 21 C 1.38253 * 108.74927 * 0.02562 * 19 10 9 22 22 H 1.08996 * 109.46989 * 59.99241 * 1 2 3 23 23 H 1.09003 * 109.46869 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46543 * 299.99248 * 1 2 3 25 25 H 1.08004 * 119.67292 * 0.02562 * 4 3 2 26 26 H 1.08003 * 119.68998 * 180.02562 * 5 4 3 27 27 H 1.07993 * 126.23605 * 0.02562 * 9 8 6 28 28 H 0.97003 * 120.00377 * 180.02562 * 14 13 11 29 29 H 1.08998 * 109.46773 * 90.02294 * 20 19 10 30 30 H 1.08995 * 109.47434 * 210.03168 * 20 19 10 31 31 H 1.09004 * 109.47042 * 330.03012 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2943 2.3739 -0.0005 5 6 1.9125 3.6172 0.0000 6 6 3.2744 3.7168 -0.0003 7 17 4.0323 5.2787 -0.0003 8 6 4.0622 2.5512 0.0007 9 6 5.4539 2.3308 0.0013 10 6 5.6604 0.9548 0.0017 11 6 6.9054 0.3159 -0.0029 12 1 6.9843 -0.7155 0.3077 13 6 8.0500 1.0143 -0.4107 14 7 9.2372 0.5588 -0.1059 15 14 7.8796 2.5961 -1.3898 16 1 7.8862 3.7556 -0.4620 17 1 9.0153 2.7154 -2.3391 18 1 6.6020 2.5747 -2.1464 19 7 4.4299 0.3242 0.0020 20 6 4.2135 -1.1247 0.0020 21 6 3.4374 1.2866 0.0012 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5137 0.8901 25 1 0.2160 2.3128 -0.0005 26 1 1.3106 4.5139 0.0000 27 1 6.2207 3.0913 0.0013 28 1 10.0295 1.0424 -0.3878 29 1 4.1597 -1.4840 1.0296 30 1 3.2798 -1.3526 -0.5120 31 1 5.0402 -1.6155 -0.5117 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527404066.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:40 Heat of formation + Delta-G solvation = -13.512242 kcal Electronic energy + Delta-G solvation = -17780.811832 eV Core-core repulsion = 14859.876671 eV Total energy + Delta-G solvation = -2920.935160 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.02962 -39.78477 -37.84651 -36.56672 -35.54734 -33.21034 -31.43957 -30.20107 -28.44170 -27.01017 -26.44896 -23.10425 -22.09812 -21.62021 -18.94337 -18.71875 -17.78247 -17.21577 -16.70916 -16.56904 -16.05808 -15.70841 -15.40291 -14.92755 -14.34266 -14.09160 -14.05059 -13.61412 -13.43725 -13.10083 -12.96519 -12.83528 -12.67131 -12.25579 -12.12563 -12.04280 -11.61035 -11.59801 -11.33294 -11.10983 -9.87494 -9.20268 -9.03922 -8.15469 -6.56207 0.27487 0.76138 1.24689 1.33798 1.48205 1.50159 1.82455 2.14277 2.24277 2.47977 2.93253 3.10549 4.02544 4.07161 4.21896 4.35484 4.49952 4.52820 4.53983 4.58887 4.71813 4.77277 4.81798 4.98991 5.18394 5.19595 5.37436 5.48510 5.63924 5.75945 6.01599 6.18244 6.35799 6.53443 6.78697 6.94898 8.01630 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.017940 B = 0.009200 C = 0.006272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.414969 B = 3042.748589 C = 4463.427681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.337 6.337 3 C 0.139 3.861 4 C -0.237 4.237 5 C -0.077 4.077 6 C -0.094 4.094 7 Cl -0.096 7.096 8 C -0.024 4.024 9 C -0.397 4.397 10 C 0.264 3.736 11 C -0.462 4.462 12 H 0.079 0.921 13 C 0.076 3.924 14 N -0.821 5.821 15 Si 0.961 3.039 16 H -0.268 1.268 17 H -0.275 1.275 18 H -0.256 1.256 19 N -0.506 5.506 20 C 0.099 3.901 21 C 0.008 3.992 22 H 0.065 0.935 23 H 0.118 0.882 24 H 0.064 0.936 25 H 0.164 0.836 26 H 0.150 0.850 27 H 0.116 0.884 28 H 0.302 0.698 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.068 0.979 -1.284 14.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.251 6.251 3 C 0.091 3.909 4 C -0.257 4.257 5 C -0.097 4.097 6 C -0.121 4.121 7 Cl -0.068 7.068 8 C -0.030 4.030 9 C -0.418 4.418 10 C 0.154 3.846 11 C -0.494 4.494 12 H 0.097 0.903 13 C -0.145 4.145 14 N -0.446 5.446 15 Si 0.786 3.214 16 H -0.194 1.194 17 H -0.202 1.202 18 H -0.180 1.180 19 N -0.195 5.195 20 C -0.042 4.042 21 C -0.095 4.095 22 H 0.083 0.917 23 H 0.136 0.864 24 H 0.083 0.917 25 H 0.181 0.819 26 H 0.168 0.832 27 H 0.133 0.867 28 H 0.113 0.887 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.726 0.530 -1.266 13.794 hybrid contribution 0.531 0.715 -0.123 0.899 sum -13.195 1.245 -1.389 13.326 Atomic orbital electron populations 1.23314 0.76415 1.05291 1.02323 1.86021 1.23579 1.26396 1.89134 1.18061 0.87556 0.85886 0.99393 1.20758 1.00259 0.89580 1.15125 1.20353 0.91002 0.98652 0.99662 1.20045 0.92757 0.83615 1.15690 1.98259 1.83427 1.27526 1.97555 1.17757 0.93566 0.90812 1.00873 1.20454 0.93773 0.93789 1.33824 1.18131 0.84726 0.90289 0.91408 1.18503 0.89032 1.00502 1.41390 0.90302 1.26360 0.93694 1.00656 0.93783 1.69572 0.99858 1.40138 1.34997 0.85557 0.78353 0.78155 0.79315 1.19433 1.20200 1.18050 1.44251 1.03589 1.05713 1.65940 1.21775 1.03150 0.76893 1.02377 1.17637 0.87851 0.88340 1.15658 0.91652 0.86397 0.91715 0.81855 0.83212 0.86689 0.88728 0.92162 0.89023 0.90510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.49 16 2 O -0.34 -10.31 8.79 -93.47 -0.82 -11.13 16 3 C 0.14 5.05 6.70 22.57 0.15 5.21 16 4 C -0.24 -7.32 9.04 22.46 0.20 -7.11 16 5 C -0.08 -2.55 9.73 22.02 0.21 -2.34 16 6 C -0.09 -3.85 6.34 22.48 0.14 -3.71 16 7 Cl -0.10 -3.66 28.83 -2.72 -0.08 -3.74 16 8 C -0.02 -1.16 6.03 -21.34 -0.13 -1.29 16 9 C -0.40 -20.57 7.94 23.14 0.18 -20.39 16 10 C 0.26 13.67 6.20 38.76 0.24 13.91 16 11 C -0.46 -24.75 9.29 23.15 0.21 -24.54 16 12 H 0.08 4.32 7.70 -2.91 -0.02 4.30 16 13 C 0.08 3.94 5.50 85.32 0.47 4.41 16 14 N -0.82 -42.64 13.92 21.87 0.30 -42.33 16 15 Si 0.96 44.39 24.53 68.60 1.68 46.08 16 16 H -0.27 -12.40 6.71 99.48 0.67 -11.74 16 17 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 18 H -0.26 -12.56 6.57 99.48 0.65 -11.91 16 19 N -0.51 -23.42 3.25 -529.62 -1.72 -25.14 16 20 C 0.10 3.65 10.53 127.77 1.34 4.99 16 21 C 0.01 0.35 6.82 39.07 0.27 0.62 16 22 H 0.06 1.06 7.66 -2.39 -0.02 1.04 16 23 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.06 1.05 7.66 -2.39 -0.02 1.03 16 25 H 0.16 3.60 6.26 -2.91 -0.02 3.58 16 26 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 27 H 0.12 6.05 4.29 -2.91 -0.01 6.04 16 28 H 0.30 14.07 8.30 -92.71 -0.77 13.30 16 29 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.09 2.99 6.78 -2.39 -0.02 2.97 16 31 H 0.08 2.79 7.55 -2.39 -0.02 2.77 16 Total: -1.00 -61.90 274.18 4.85 -57.04 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 1.07 Total: 7.97 kcal Atomic # 6 Polarization: -33.15 SS G_CDS: 4.41 Total: -28.74 kcal Atomic # 7 Polarization: -66.06 SS G_CDS: -1.41 Total: -67.47 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -0.82 Total: -11.13 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.68 Total: 46.08 kcal Atomic # 17 Polarization: -3.66 SS G_CDS: -0.08 Total: -3.74 kcal Total: -61.90 4.85 -57.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527404066.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.529 kcal (2) G-P(sol) polarization free energy of solvation -61.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds