Wall clock time and date at job start Mon Mar 30 2020 06:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35999 * 116.99982 * 2 1 4 4 C 1.38438 * 120.08445 * 0.02562 * 3 2 1 5 5 C 1.38860 * 120.64852 * 179.97438 * 4 3 2 6 6 C 1.36561 * 120.61872 * 0.02562 * 5 4 3 7 7 Cl 1.73597 * 120.06226 * 180.02562 * 6 5 4 8 8 C 1.40681 * 119.87531 * 359.97209 * 6 5 4 9 9 C 1.40902 * 133.06275 * 180.02562 * 8 6 5 10 10 C 1.50709 * 126.22666 * 0.02572 * 9 8 6 11 11 C 1.39137 * 107.54095 * 180.02562 * 9 8 6 12 12 C 1.39938 * 125.70380 * 179.97438 * 11 9 8 13 13 H 1.08006 * 119.99594 * 21.99534 * 12 11 9 14 14 C 1.40148 * 120.00357 * 202.00203 * 12 11 9 15 15 N 1.30765 * 120.00428 * 166.11080 * 14 12 11 16 16 Si 1.86805 * 119.99728 * 346.10213 * 14 12 11 17 17 H 1.48501 * 109.47111 * 180.02562 * 16 14 12 18 18 H 1.48497 * 109.47281 * 300.00487 * 16 14 12 19 19 H 1.48501 * 109.46866 * 60.00538 * 16 14 12 20 20 N 1.38264 * 108.59761 * 0.26624 * 11 9 8 21 21 H 0.96997 * 125.63151 * 179.73007 * 20 11 9 22 22 C 1.38259 * 108.74956 * 359.56951 * 20 11 9 23 23 H 1.08999 * 109.47203 * 299.99649 * 1 2 3 24 24 H 1.08993 * 109.47302 * 60.00391 * 1 2 3 25 25 H 1.09007 * 109.46789 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.67232 * 359.95143 * 4 3 2 27 27 H 1.07990 * 119.69015 * 179.97438 * 5 4 3 28 28 H 1.08993 * 109.46878 * 269.99501 * 10 9 8 29 29 H 1.08999 * 109.46831 * 29.99755 * 10 9 8 30 30 H 1.09001 * 109.46376 * 149.99669 * 10 9 8 31 31 H 0.97005 * 119.99652 * 354.35712 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2941 2.3739 0.0005 5 6 1.9123 3.6173 0.0011 6 6 3.2743 3.7169 0.0006 7 17 4.0320 5.2788 0.0019 8 6 4.0622 2.5514 0.0001 9 6 5.4538 2.3309 0.0000 10 6 6.5238 3.3923 0.0009 11 6 5.6604 0.9549 -0.0012 12 6 6.9053 0.3160 -0.0022 13 1 7.7819 0.8408 0.3482 14 6 7.0149 -1.0048 -0.4580 15 7 8.1921 -1.5116 -0.7171 16 14 5.4790 -2.0413 -0.6951 17 1 5.8629 -3.3912 -1.1805 18 1 4.7616 -2.1666 0.5991 19 1 4.5915 -1.3903 -1.6920 20 7 4.4299 0.3244 -0.0079 21 1 4.2866 -0.6349 -0.0138 22 6 3.4373 1.2868 -0.0012 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2158 2.3128 0.0002 27 1 1.3104 4.5139 0.0011 28 1 6.7818 3.6489 -1.0265 29 1 6.1549 4.2795 0.5155 30 1 7.4084 3.0157 0.5146 31 1 8.9821 -0.9504 -0.6729 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527404564.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:35 Heat of formation + Delta-G solvation = -2.377043 kcal Electronic energy + Delta-G solvation = -17784.385429 eV Core-core repulsion = 14863.933127 eV Total energy + Delta-G solvation = -2920.452302 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.45809 -38.44308 -36.28845 -35.05132 -33.67929 -31.76322 -29.53867 -28.59664 -27.08136 -26.34844 -24.36514 -21.67039 -20.89571 -19.04772 -18.14950 -17.55484 -16.58272 -15.42991 -15.41295 -14.84957 -14.62695 -13.88761 -13.66725 -13.29140 -12.89368 -12.37819 -12.04643 -11.93890 -11.89717 -11.70725 -11.42100 -11.30106 -10.97079 -10.85562 -10.68646 -10.17661 -10.09935 -9.88205 -9.60175 -9.53110 -8.24295 -7.73583 -7.43992 -6.60258 -4.69235 1.86545 2.31751 2.76344 2.86428 2.97217 3.06175 3.58462 3.65220 3.71539 4.10883 4.54178 4.84150 5.24521 5.34811 5.48238 5.57152 5.64204 5.95361 6.16340 6.23684 6.41484 6.75176 6.79801 6.81996 6.90539 6.99590 7.12971 7.24222 7.28808 7.35757 7.60316 7.90160 8.09792 8.19695 8.43393 8.68493 9.71158 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.016687 B = 0.009676 C = 0.006187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.554254 B = 2892.958114 C = 4524.766660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.329 6.329 3 C 0.136 3.864 4 C -0.258 4.258 5 C -0.083 4.083 6 C -0.075 4.075 7 Cl -0.098 7.098 8 C 0.010 3.990 9 C -0.322 4.322 10 C -0.042 4.042 11 C 0.282 3.718 12 C -0.495 4.495 13 H 0.103 0.897 14 C 0.043 3.957 15 N -0.799 5.799 16 Si 1.033 2.967 17 H -0.266 1.266 18 H -0.266 1.266 19 H -0.259 1.259 20 N -0.620 5.620 21 H 0.394 0.606 22 C 0.024 3.976 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.091 0.909 26 H 0.121 0.879 27 H 0.116 0.884 28 H 0.034 0.966 29 H 0.050 0.950 30 H 0.042 0.958 31 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.918 2.912 0.645 10.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.243 6.243 3 C 0.090 3.910 4 C -0.278 4.278 5 C -0.103 4.103 6 C -0.102 4.102 7 Cl -0.069 7.069 8 C 0.004 3.996 9 C -0.325 4.325 10 C -0.100 4.100 11 C 0.173 3.827 12 C -0.528 4.528 13 H 0.121 0.879 14 C -0.179 4.179 15 N -0.421 5.421 16 Si 0.861 3.139 17 H -0.191 1.191 18 H -0.194 1.194 19 H -0.185 1.185 20 N -0.239 5.239 21 H 0.239 0.761 22 C -0.079 4.079 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.109 0.891 26 H 0.139 0.861 27 H 0.134 0.866 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.186 1.205 0.231 10.260 hybrid contribution 0.260 1.281 0.412 1.371 sum -9.926 2.486 0.643 10.253 Atomic orbital electron populations 1.22908 0.79224 1.02938 1.01130 1.86016 1.20831 1.27871 1.89624 1.17981 0.88451 0.84208 1.00406 1.20204 0.98243 0.90715 1.18644 1.19916 0.91995 0.96804 1.01603 1.19724 0.91594 0.83828 1.15083 1.98254 1.82927 1.28235 1.97528 1.17439 0.93554 0.88939 0.99631 1.19032 0.91058 0.92249 1.30181 1.19737 0.95390 0.95544 0.99295 1.18142 0.83734 0.90485 0.90303 1.20041 0.93635 0.99822 1.39293 0.87887 1.27031 1.03291 0.96074 0.91503 1.70461 1.00065 1.40142 1.31461 0.84211 0.73645 0.77466 0.78617 1.19122 1.19377 1.18475 1.43107 1.05034 1.06447 1.69357 0.76091 1.17202 0.86426 0.89121 1.15172 0.92962 0.92962 0.89077 0.86110 0.86572 0.94678 0.93157 0.93914 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.81 101.05 0.99 1.41 16 2 O -0.33 -6.07 10.50 -19.74 -0.21 -6.27 16 3 C 0.14 2.79 6.70 -39.12 -0.26 2.53 16 4 C -0.26 -4.61 9.04 -39.28 -0.36 -4.96 16 5 C -0.08 -1.51 9.73 -39.96 -0.39 -1.90 16 6 C -0.08 -1.55 6.34 -39.27 -0.25 -1.80 16 7 Cl -0.10 -1.80 26.30 -51.86 -1.36 -3.16 16 8 C 0.01 0.24 6.03 -106.90 -0.64 -0.41 16 9 C -0.32 -7.79 6.26 -103.28 -0.65 -8.44 16 10 C -0.04 -0.91 9.57 36.01 0.34 -0.56 16 11 C 0.28 7.09 6.36 -83.99 -0.53 6.55 16 12 C -0.49 -12.55 9.39 -38.23 -0.36 -12.91 16 13 H 0.10 2.65 7.43 -52.48 -0.39 2.26 16 14 C 0.04 1.07 5.52 -17.29 -0.10 0.98 16 15 N -0.80 -19.97 13.65 55.56 0.76 -19.21 16 16 Si 1.03 21.87 24.96 -169.99 -4.24 17.63 16 17 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 18 H -0.27 -5.34 6.75 56.52 0.38 -4.96 16 19 H -0.26 -5.49 6.85 56.52 0.39 -5.10 16 20 N -0.62 -14.97 5.00 -8.20 -0.04 -15.01 16 21 H 0.39 8.99 3.16 -40.82 -0.13 8.86 16 22 C 0.02 0.56 7.18 -83.50 -0.60 -0.04 16 23 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 24 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 25 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.12 1.75 6.26 -52.49 -0.33 1.42 16 27 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.05 1.01 5.99 -51.93 -0.31 0.69 16 30 H 0.04 0.89 7.42 -51.93 -0.39 0.51 16 31 H 0.29 7.10 8.73 -40.82 -0.36 6.74 16 LS Contribution 271.71 15.07 4.09 4.09 Total: -1.00 -26.94 271.71 -6.59 -33.53 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -2.79 Total: 7.96 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -2.80 Total: -19.56 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.72 Total: -34.22 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.21 Total: -6.27 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.24 Total: 17.63 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -1.36 Total: -3.16 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -26.94 -6.59 -33.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527404564.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.155 kcal (2) G-P(sol) polarization free energy of solvation -26.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds