Wall clock time and date at job start Mon Mar 30 2020 06:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35999 * 116.99982 * 2 1 4 4 C 1.38438 * 120.08445 * 0.02562 * 3 2 1 5 5 C 1.38860 * 120.64852 * 179.97438 * 4 3 2 6 6 C 1.36561 * 120.61872 * 0.02562 * 5 4 3 7 7 Cl 1.73597 * 120.06226 * 180.02562 * 6 5 4 8 8 C 1.40681 * 119.87531 * 359.97209 * 6 5 4 9 9 C 1.40902 * 133.06275 * 180.02562 * 8 6 5 10 10 C 1.50709 * 126.22666 * 0.02572 * 9 8 6 11 11 C 1.39137 * 107.54095 * 180.02562 * 9 8 6 12 12 C 1.39938 * 125.70380 * 179.97438 * 11 9 8 13 13 H 1.08006 * 119.99594 * 21.99534 * 12 11 9 14 14 C 1.40148 * 120.00357 * 202.00203 * 12 11 9 15 15 N 1.30765 * 120.00428 * 166.11080 * 14 12 11 16 16 Si 1.86805 * 119.99728 * 346.10213 * 14 12 11 17 17 H 1.48501 * 109.47111 * 180.02562 * 16 14 12 18 18 H 1.48497 * 109.47281 * 300.00487 * 16 14 12 19 19 H 1.48501 * 109.46866 * 60.00538 * 16 14 12 20 20 N 1.38264 * 108.59761 * 0.26624 * 11 9 8 21 21 H 0.96997 * 125.63151 * 179.73007 * 20 11 9 22 22 C 1.38259 * 108.74956 * 359.56951 * 20 11 9 23 23 H 1.08999 * 109.47203 * 299.99649 * 1 2 3 24 24 H 1.08993 * 109.47302 * 60.00391 * 1 2 3 25 25 H 1.09007 * 109.46789 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.67232 * 359.95143 * 4 3 2 27 27 H 1.07990 * 119.69015 * 179.97438 * 5 4 3 28 28 H 1.08993 * 109.46878 * 269.99501 * 10 9 8 29 29 H 1.08999 * 109.46831 * 29.99755 * 10 9 8 30 30 H 1.09001 * 109.46376 * 149.99669 * 10 9 8 31 31 H 0.97005 * 119.99652 * 354.35712 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2941 2.3739 0.0005 5 6 1.9123 3.6173 0.0011 6 6 3.2743 3.7169 0.0006 7 17 4.0320 5.2788 0.0019 8 6 4.0622 2.5514 0.0001 9 6 5.4538 2.3309 0.0000 10 6 6.5238 3.3923 0.0009 11 6 5.6604 0.9549 -0.0012 12 6 6.9053 0.3160 -0.0022 13 1 7.7819 0.8408 0.3482 14 6 7.0149 -1.0048 -0.4580 15 7 8.1921 -1.5116 -0.7171 16 14 5.4790 -2.0413 -0.6951 17 1 5.8629 -3.3912 -1.1805 18 1 4.7616 -2.1666 0.5991 19 1 4.5915 -1.3903 -1.6920 20 7 4.4299 0.3244 -0.0079 21 1 4.2866 -0.6349 -0.0138 22 6 3.4373 1.2868 -0.0012 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2158 2.3128 0.0002 27 1 1.3104 4.5139 0.0011 28 1 6.7818 3.6489 -1.0265 29 1 6.1549 4.2795 0.5155 30 1 7.4084 3.0157 0.5146 31 1 8.9821 -0.9504 -0.6729 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527404564.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:35 Heat of formation + Delta-G solvation = -17.926219 kcal Electronic energy + Delta-G solvation = -17785.059692 eV Core-core repulsion = 14863.933127 eV Total energy + Delta-G solvation = -2921.126565 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.11564 -39.88574 -37.83360 -36.59614 -35.46744 -33.48721 -31.20449 -30.09766 -28.45065 -27.95006 -26.02170 -23.28185 -22.52985 -20.71630 -19.93733 -19.20842 -18.08008 -16.92929 -16.69653 -16.45811 -16.20017 -15.51049 -15.26019 -14.91537 -14.52247 -13.97060 -13.67967 -13.53628 -13.38119 -13.26023 -12.95523 -12.87800 -12.40280 -12.33307 -12.15063 -11.93762 -11.74081 -11.39050 -11.29685 -11.16725 -9.88670 -9.58749 -9.20273 -8.24524 -6.57039 0.25289 0.73369 1.07239 1.14576 1.33169 1.51371 1.81429 1.92732 2.35221 2.46589 2.87466 3.01590 4.03462 4.09560 4.33497 4.45382 4.47138 4.50678 4.60135 4.75614 4.85069 5.06682 5.12759 5.19474 5.27328 5.34688 5.35264 5.49369 5.56979 5.69294 5.83332 6.24724 6.37782 6.50196 6.67551 6.88043 7.83227 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.016687 B = 0.009676 C = 0.006187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.554254 B = 2892.958114 C = 4524.766660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.349 6.349 3 C 0.131 3.869 4 C -0.234 4.234 5 C -0.076 4.076 6 C -0.086 4.086 7 Cl -0.082 7.082 8 C -0.017 4.017 9 C -0.341 4.341 10 C -0.036 4.036 11 C 0.258 3.742 12 C -0.523 4.523 13 H 0.082 0.918 14 C 0.014 3.986 15 N -0.822 5.822 16 Si 1.064 2.936 17 H -0.251 1.251 18 H -0.252 1.252 19 H -0.262 1.262 20 N -0.623 5.623 21 H 0.396 0.604 22 C -0.005 4.005 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.117 0.883 26 H 0.166 0.834 27 H 0.154 0.846 28 H 0.035 0.965 29 H 0.063 0.937 30 H 0.036 0.964 31 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.813 3.712 0.669 14.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.264 6.264 3 C 0.084 3.916 4 C -0.253 4.253 5 C -0.096 4.096 6 C -0.113 4.113 7 Cl -0.054 7.054 8 C -0.023 4.023 9 C -0.346 4.346 10 C -0.093 4.093 11 C 0.149 3.851 12 C -0.557 4.557 13 H 0.100 0.900 14 C -0.203 4.203 15 N -0.446 5.446 16 Si 0.886 3.114 17 H -0.175 1.175 18 H -0.178 1.178 19 H -0.188 1.188 20 N -0.242 5.242 21 H 0.241 0.759 22 C -0.108 4.108 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.135 0.865 26 H 0.183 0.817 27 H 0.171 0.829 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.087 2.005 0.264 14.232 hybrid contribution 1.143 1.244 0.435 1.745 sum -12.944 3.249 0.699 13.364 Atomic orbital electron populations 1.23358 0.75970 1.05440 1.02671 1.86005 1.24128 1.26994 1.89258 1.18198 0.87716 0.85948 0.99769 1.20773 1.00305 0.89471 1.14794 1.20406 0.91241 0.98525 0.99433 1.19999 0.92590 0.83923 1.14791 1.98256 1.82948 1.26718 1.97455 1.17697 0.93336 0.90324 1.00921 1.19442 0.92471 0.92459 1.30184 1.19704 0.94739 0.95458 0.99398 1.18221 0.84018 0.91182 0.91696 1.19931 0.93467 1.00700 1.41560 0.90024 1.27963 1.04865 0.96768 0.90720 1.70519 1.00255 1.40187 1.33610 0.83821 0.71370 0.76997 0.79163 1.17520 1.17826 1.18783 1.43138 1.05031 1.06808 1.69250 0.75870 1.17737 0.87882 0.88977 1.16227 0.91249 0.91320 0.86469 0.81714 0.82864 0.94585 0.91853 0.94543 0.90097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.81 113.37 1.11 1.50 16 2 O -0.35 -11.72 10.50 -93.54 -0.98 -12.70 16 3 C 0.13 4.96 6.70 22.57 0.15 5.11 16 4 C -0.23 -7.17 9.04 22.47 0.20 -6.97 16 5 C -0.08 -2.43 9.73 22.03 0.21 -2.22 16 6 C -0.09 -3.33 6.34 22.47 0.14 -3.19 16 7 Cl -0.08 -2.84 26.30 -2.72 -0.07 -2.91 16 8 C -0.02 -0.78 6.03 -21.34 -0.13 -0.91 16 9 C -0.34 -16.89 6.26 -18.99 -0.12 -17.01 16 10 C -0.04 -1.57 9.57 71.24 0.68 -0.89 16 11 C 0.26 13.42 6.36 38.76 0.25 13.66 16 12 C -0.52 -28.08 9.39 23.15 0.22 -27.86 16 13 H 0.08 4.55 7.43 -2.91 -0.02 4.53 16 14 C 0.01 0.74 5.52 85.32 0.47 1.21 16 15 N -0.82 -42.96 13.65 21.86 0.30 -42.66 16 16 Si 1.06 44.85 24.96 68.60 1.71 46.56 16 17 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 18 H -0.25 -9.87 6.75 99.48 0.67 -9.20 16 19 H -0.26 -11.05 6.85 99.48 0.68 -10.36 16 20 N -0.62 -30.33 5.00 -179.85 -0.90 -31.23 16 21 H 0.40 18.07 3.16 -92.71 -0.29 17.77 16 22 C -0.01 -0.25 7.18 39.07 0.28 0.04 16 23 H 0.07 1.17 7.66 -2.39 -0.02 1.16 16 24 H 0.07 1.17 7.66 -2.39 -0.02 1.15 16 25 H 0.12 1.75 8.14 -2.38 -0.02 1.73 16 26 H 0.17 3.60 6.26 -2.91 -0.02 3.58 16 27 H 0.15 3.78 8.06 -2.92 -0.02 3.76 16 28 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.06 2.54 5.99 -2.39 -0.01 2.52 16 30 H 0.04 1.59 7.42 -2.39 -0.02 1.57 16 31 H 0.29 14.79 8.73 -92.70 -0.81 13.98 16 Total: -1.00 -60.19 271.71 4.32 -55.87 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: 0.79 Total: 24.59 kcal Atomic # 6 Polarization: -41.00 SS G_CDS: 3.47 Total: -37.53 kcal Atomic # 7 Polarization: -73.29 SS G_CDS: -0.60 Total: -73.89 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -0.98 Total: -12.70 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.71 Total: 46.56 kcal Atomic # 17 Polarization: -2.84 SS G_CDS: -0.07 Total: -2.91 kcal Total: -60.19 4.32 -55.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527404564.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.945 kcal (2) G-P(sol) polarization free energy of solvation -60.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds