Wall clock time and date at job start Mon Mar 30 2020 06:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36004 * 116.99995 * 2 1 4 4 C 1.37796 * 119.83715 * 0.02765 * 3 2 1 5 5 C 1.40518 * 119.66700 * 180.02562 * 4 3 2 6 6 C 1.40903 * 132.97910 * 180.26382 * 5 4 3 7 7 C 1.50698 * 126.23544 * 359.96157 * 6 5 4 8 8 C 1.39139 * 107.52791 * 180.09673 * 6 5 4 9 9 C 1.39904 * 125.68856 * 179.90219 * 8 6 5 10 10 H 1.07997 * 120.00098 * 9.68472 * 9 8 6 11 11 C 1.40173 * 119.99784 * 189.68302 * 9 8 6 12 12 N 1.30761 * 120.00107 * 8.96828 * 11 9 8 13 13 Si 1.86804 * 119.99606 * 188.96321 * 11 9 8 14 14 H 1.48493 * 109.47298 * 265.01884 * 13 11 9 15 15 H 1.48497 * 109.47112 * 25.02288 * 13 11 9 16 16 H 1.48509 * 109.46748 * 145.01652 * 13 11 9 17 17 N 1.38317 * 108.62022 * 359.64059 * 8 6 5 18 18 H 0.97003 * 125.61215 * 180.18953 * 17 8 6 19 19 C 1.38247 * 108.76835 * 0.22314 * 17 8 6 20 20 C 1.38847 * 132.64640 * 179.97438 * 19 17 8 21 21 C 1.38050 * 120.08804 * 180.02562 * 20 19 17 22 22 Cl 1.73604 * 119.68614 * 180.02562 * 21 20 19 23 23 H 1.08997 * 109.47187 * 299.99696 * 1 2 3 24 24 H 1.09002 * 109.47424 * 59.99508 * 1 2 3 25 25 H 1.09000 * 109.47279 * 179.97438 * 1 2 3 26 26 H 1.08004 * 120.16333 * 359.97370 * 4 3 2 27 27 H 1.09000 * 109.47121 * 270.18350 * 7 6 5 28 28 H 1.09003 * 109.47347 * 30.18900 * 7 6 5 29 29 H 1.09002 * 109.47150 * 150.18737 * 7 6 5 30 30 H 0.96999 * 119.99565 * 179.97438 * 12 11 9 31 31 H 1.07999 * 119.95739 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2927 2.3653 0.0006 5 6 1.9343 3.6154 0.0000 6 6 1.4559 4.9407 0.0051 7 6 0.0101 5.3658 0.0123 8 6 2.5615 5.7854 -0.0008 9 6 2.5202 7.1839 -0.0003 10 1 1.5836 7.6964 0.1622 11 6 3.6946 7.9197 -0.2108 12 7 4.7908 7.3101 -0.5802 13 14 3.6934 9.7713 0.0363 14 1 3.4592 10.4444 -1.2665 15 1 2.6146 10.1432 0.9866 16 1 5.0055 10.1982 0.5853 17 7 3.7082 5.0120 -0.0012 18 1 4.6175 5.3499 -0.0022 19 6 3.3450 3.6781 -0.0006 20 6 4.0833 2.5021 -0.0012 21 6 3.4396 1.2809 -0.0009 22 17 4.3730 -0.1829 -0.0009 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 0.2141 2.3088 0.0006 27 1 -0.3438 5.4675 -1.0136 28 1 -0.5869 4.6149 0.5299 29 1 -0.0848 6.3226 0.5258 30 1 5.6033 7.8194 -0.7262 31 1 5.1625 2.5429 -0.0018 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527404598.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:38 Heat of formation + Delta-G solvation = -18.069308 kcal Electronic energy + Delta-G solvation = -17382.677446 eV Core-core repulsion = 14461.544676 eV Total energy + Delta-G solvation = -2921.132770 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.03772 -38.44679 -35.92951 -34.87807 -33.29662 -31.82453 -29.11508 -28.44760 -27.30232 -25.90300 -24.40606 -21.38149 -20.79223 -18.80786 -17.60051 -16.76481 -16.43155 -15.25002 -15.17824 -15.11030 -14.18776 -13.38322 -13.34575 -13.30765 -12.82675 -12.35042 -12.18668 -11.84439 -11.66877 -11.63626 -11.42761 -11.17210 -10.88662 -10.87070 -10.78235 -10.35188 -10.20730 -9.88957 -9.80281 -9.23136 -8.48567 -7.32726 -7.04371 -6.50230 -4.65180 1.96546 2.57662 2.76430 2.85756 2.91566 3.04130 3.60959 3.69007 3.88818 4.71407 4.76519 5.00994 5.43758 5.54209 5.61651 5.78485 6.06678 6.20199 6.32058 6.36842 6.61565 6.71782 6.74834 6.78959 6.81877 7.05355 7.09868 7.37373 7.45354 7.66870 7.78207 8.04664 8.26561 8.40839 8.69507 9.23610 9.71373 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.029606 B = 0.005557 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.538801 B = 5037.841141 C = 5947.683075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.318 6.318 3 C 0.118 3.882 4 C -0.222 4.222 5 C 0.006 3.994 6 C -0.355 4.355 7 C -0.035 4.035 8 C 0.310 3.690 9 C -0.434 4.434 10 H 0.104 0.896 11 C 0.071 3.929 12 N -0.817 5.817 13 Si 0.932 3.068 14 H -0.266 1.266 15 H -0.256 1.256 16 H -0.273 1.273 17 N -0.590 5.590 18 H 0.422 0.578 19 C 0.029 3.971 20 C -0.075 4.075 21 C -0.110 4.110 22 Cl -0.097 7.097 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.088 0.912 26 H 0.117 0.883 27 H 0.031 0.969 28 H 0.034 0.966 29 H 0.044 0.956 30 H 0.294 0.706 31 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.860 -3.622 0.915 4.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.232 6.232 3 C 0.072 3.928 4 C -0.242 4.242 5 C 0.001 3.999 6 C -0.359 4.359 7 C -0.093 4.093 8 C 0.198 3.802 9 C -0.467 4.467 10 H 0.122 0.878 11 C -0.147 4.147 12 N -0.446 5.446 13 Si 0.756 3.244 14 H -0.190 1.190 15 H -0.180 1.180 16 H -0.198 1.198 17 N -0.203 5.203 18 H 0.267 0.733 19 C -0.076 4.076 20 C -0.097 4.097 21 C -0.138 4.138 22 Cl -0.069 7.069 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.107 0.893 26 H 0.135 0.865 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.327 -3.868 0.859 4.595 hybrid contribution 0.499 0.909 -0.013 1.037 sum -1.828 -2.959 0.846 3.579 Atomic orbital electron populations 1.22870 0.79744 1.02526 1.01102 1.86048 1.20171 1.27203 1.89794 1.18047 0.89857 0.83960 1.00932 1.20174 0.98163 0.90221 1.15674 1.17765 0.91534 0.92685 0.97899 1.19086 0.93947 0.89996 1.32854 1.19546 0.92145 0.98861 0.98729 1.17886 0.83182 0.90693 0.88422 1.19139 0.96105 0.89151 1.42289 0.87837 1.26200 0.94411 1.03130 0.90974 1.69076 1.02190 1.39794 1.33513 0.85866 0.79142 0.79556 0.79867 1.19050 1.17966 1.19799 1.42723 1.09627 1.02107 1.65855 0.73265 1.18082 0.93706 0.85330 1.10527 1.19314 0.98138 0.88241 1.04043 1.19036 0.87601 0.86011 1.21131 1.98255 1.73502 1.37271 1.97887 0.93179 0.93169 0.89309 0.86533 0.94976 0.94735 0.93652 0.89496 0.86533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.81 101.05 0.99 1.45 16 2 O -0.32 -5.87 9.93 -19.75 -0.20 -6.07 16 3 C 0.12 2.44 6.67 -39.28 -0.26 2.18 16 4 C -0.22 -4.71 9.10 -38.88 -0.35 -5.06 16 5 C 0.01 0.15 6.09 -106.90 -0.65 -0.50 16 6 C -0.35 -8.46 6.26 -103.28 -0.65 -9.10 16 7 C -0.04 -0.71 10.14 36.00 0.37 -0.35 16 8 C 0.31 7.70 6.60 -83.98 -0.55 7.14 16 9 C -0.43 -10.26 9.03 -38.23 -0.35 -10.60 16 10 H 0.10 2.31 7.14 -52.49 -0.37 1.93 16 11 C 0.07 1.56 5.48 -17.28 -0.09 1.47 16 12 N -0.82 -18.42 10.85 55.56 0.60 -17.82 16 13 Si 0.93 16.56 29.57 -169.99 -5.03 11.54 16 14 H -0.27 -4.70 7.11 56.52 0.40 -4.30 16 15 H -0.26 -4.50 7.11 56.52 0.40 -4.10 16 16 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 17 N -0.59 -14.27 5.80 -8.27 -0.05 -14.32 16 18 H 0.42 9.96 6.54 -40.82 -0.27 9.69 16 19 C 0.03 0.68 7.23 -83.62 -0.60 0.07 16 20 C -0.08 -1.61 9.82 -39.42 -0.39 -2.00 16 21 C -0.11 -2.30 6.34 -39.18 -0.25 -2.55 16 22 Cl -0.10 -1.80 28.46 -51.86 -1.48 -3.27 16 23 H 0.05 0.66 7.65 -51.93 -0.40 0.26 16 24 H 0.05 0.66 7.65 -51.93 -0.40 0.26 16 25 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.12 2.20 6.26 -52.48 -0.33 1.87 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.04 0.87 7.38 -51.93 -0.38 0.48 16 30 H 0.29 5.97 8.29 -40.82 -0.34 5.63 16 31 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 281.91 15.07 4.25 4.25 Total: -1.00 -25.77 281.91 -7.66 -33.43 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -2.97 Total: 10.13 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -2.79 Total: -17.87 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: 0.56 Total: -32.14 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -0.20 Total: -6.07 kcal Atomic # 14 Polarization: 16.56 SS G_CDS: -5.03 Total: 11.54 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -1.48 Total: -3.27 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -25.77 -7.66 -33.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527404598.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.362 kcal (2) G-P(sol) polarization free energy of solvation -25.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds