Wall clock time and date at job start Mon Mar 30 2020 06:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36004 * 116.99995 * 2 1 4 4 C 1.37796 * 119.83715 * 0.02765 * 3 2 1 5 5 C 1.40518 * 119.66700 * 180.02562 * 4 3 2 6 6 C 1.40903 * 132.97910 * 180.26382 * 5 4 3 7 7 C 1.50698 * 126.23544 * 359.96157 * 6 5 4 8 8 C 1.39139 * 107.52791 * 180.09673 * 6 5 4 9 9 C 1.39904 * 125.68856 * 179.90219 * 8 6 5 10 10 H 1.07997 * 120.00098 * 9.68472 * 9 8 6 11 11 C 1.40173 * 119.99784 * 189.68302 * 9 8 6 12 12 N 1.30761 * 120.00107 * 8.96828 * 11 9 8 13 13 Si 1.86804 * 119.99606 * 188.96321 * 11 9 8 14 14 H 1.48493 * 109.47298 * 265.01884 * 13 11 9 15 15 H 1.48497 * 109.47112 * 25.02288 * 13 11 9 16 16 H 1.48509 * 109.46748 * 145.01652 * 13 11 9 17 17 N 1.38317 * 108.62022 * 359.64059 * 8 6 5 18 18 H 0.97003 * 125.61215 * 180.18953 * 17 8 6 19 19 C 1.38247 * 108.76835 * 0.22314 * 17 8 6 20 20 C 1.38847 * 132.64640 * 179.97438 * 19 17 8 21 21 C 1.38050 * 120.08804 * 180.02562 * 20 19 17 22 22 Cl 1.73604 * 119.68614 * 180.02562 * 21 20 19 23 23 H 1.08997 * 109.47187 * 299.99696 * 1 2 3 24 24 H 1.09002 * 109.47424 * 59.99508 * 1 2 3 25 25 H 1.09000 * 109.47279 * 179.97438 * 1 2 3 26 26 H 1.08004 * 120.16333 * 359.97370 * 4 3 2 27 27 H 1.09000 * 109.47121 * 270.18350 * 7 6 5 28 28 H 1.09003 * 109.47347 * 30.18900 * 7 6 5 29 29 H 1.09002 * 109.47150 * 150.18737 * 7 6 5 30 30 H 0.96999 * 119.99565 * 179.97438 * 12 11 9 31 31 H 1.07999 * 119.95739 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2927 2.3653 0.0006 5 6 1.9343 3.6154 0.0000 6 6 1.4559 4.9407 0.0051 7 6 0.0101 5.3658 0.0123 8 6 2.5615 5.7854 -0.0008 9 6 2.5202 7.1839 -0.0003 10 1 1.5836 7.6964 0.1622 11 6 3.6946 7.9197 -0.2108 12 7 4.7908 7.3101 -0.5802 13 14 3.6934 9.7713 0.0363 14 1 3.4592 10.4444 -1.2665 15 1 2.6146 10.1432 0.9866 16 1 5.0055 10.1982 0.5853 17 7 3.7082 5.0120 -0.0012 18 1 4.6175 5.3499 -0.0022 19 6 3.3450 3.6781 -0.0006 20 6 4.0833 2.5021 -0.0012 21 6 3.4396 1.2809 -0.0009 22 17 4.3730 -0.1829 -0.0009 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 0.2141 2.3088 0.0006 27 1 -0.3438 5.4675 -1.0136 28 1 -0.5869 4.6149 0.5299 29 1 -0.0848 6.3226 0.5258 30 1 5.6033 7.8194 -0.7262 31 1 5.1625 2.5429 -0.0018 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527404598.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:38 Heat of formation + Delta-G solvation = -30.983801 kcal Electronic energy + Delta-G solvation = -17383.237460 eV Core-core repulsion = 14461.544676 eV Total energy + Delta-G solvation = -2921.692784 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.71841 -39.95331 -37.48974 -36.50789 -34.95805 -33.52360 -30.77743 -30.04946 -28.74502 -27.44744 -26.05031 -23.02295 -22.45785 -20.46343 -19.31571 -18.35464 -18.08020 -16.87951 -16.61176 -16.52542 -15.73879 -15.06217 -14.91683 -14.87612 -14.39889 -13.84675 -13.70264 -13.43963 -13.28782 -13.19184 -12.93742 -12.64513 -12.36301 -12.32313 -12.22548 -11.90500 -11.75926 -11.46982 -11.41210 -10.84364 -10.17473 -8.97500 -8.75408 -8.20738 -6.40333 0.28082 0.90282 1.32055 1.40535 1.42805 1.55830 2.03269 2.14405 2.51545 2.97506 3.05296 3.26215 3.97120 4.33295 4.48858 4.54220 4.57354 4.68857 4.72060 4.80072 4.96257 5.08404 5.09594 5.17854 5.19211 5.39143 5.46332 5.67674 5.75625 5.96881 6.06899 6.49326 6.54467 6.73875 6.93309 7.45588 8.08998 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.029606 B = 0.005557 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.538801 B = 5037.841141 C = 5947.683075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.327 6.327 3 C 0.120 3.880 4 C -0.223 4.223 5 C -0.017 4.017 6 C -0.378 4.378 7 C -0.030 4.030 8 C 0.278 3.722 9 C -0.461 4.461 10 H 0.108 0.892 11 C 0.035 3.965 12 N -0.841 5.841 13 Si 1.004 2.996 14 H -0.262 1.262 15 H -0.253 1.253 16 H -0.267 1.267 17 N -0.596 5.596 18 H 0.419 0.581 19 C -0.001 4.001 20 C -0.077 4.077 21 C -0.117 4.117 22 Cl -0.075 7.075 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.123 0.877 26 H 0.138 0.862 27 H 0.036 0.964 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.302 0.698 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.536 -3.952 1.042 5.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.241 6.241 3 C 0.073 3.927 4 C -0.242 4.242 5 C -0.023 4.023 6 C -0.382 4.382 7 C -0.087 4.087 8 C 0.166 3.834 9 C -0.494 4.494 10 H 0.126 0.874 11 C -0.181 4.181 12 N -0.470 5.470 13 Si 0.824 3.176 14 H -0.186 1.186 15 H -0.176 1.176 16 H -0.192 1.192 17 N -0.210 5.210 18 H 0.264 0.736 19 C -0.105 4.105 20 C -0.099 4.099 21 C -0.145 4.145 22 Cl -0.047 7.047 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.141 0.859 26 H 0.155 0.845 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.114 0.886 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.016 -4.237 0.983 5.293 hybrid contribution 0.705 0.789 -0.066 1.060 sum -2.311 -3.448 0.917 4.251 Atomic orbital electron populations 1.23239 0.77134 1.05090 1.01715 1.86044 1.22821 1.25846 1.89364 1.18142 0.90003 0.84723 0.99828 1.20381 0.99311 0.89517 1.15040 1.18089 0.91861 0.93553 0.98753 1.19587 0.95335 0.90244 1.33071 1.19545 0.90461 0.99450 0.99288 1.18351 0.83784 0.91632 0.89601 1.19417 0.97192 0.89191 1.43570 0.87364 1.27063 0.93551 1.07477 0.89990 1.69103 1.02858 1.41564 1.33459 0.84816 0.79275 0.73753 0.79791 1.18613 1.17604 1.19151 1.42745 1.09446 1.02471 1.66305 0.73622 1.18425 0.94422 0.85626 1.12047 1.19502 0.98848 0.87999 1.03579 1.19263 0.88370 0.86709 1.20115 1.98256 1.72949 1.35719 1.97762 0.92475 0.92571 0.85891 0.84459 0.94480 0.93200 0.93271 0.88630 0.85241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 9.81 113.37 1.11 1.67 16 2 O -0.33 -11.30 9.93 -93.60 -0.93 -12.23 16 3 C 0.12 4.79 6.67 22.47 0.15 4.94 16 4 C -0.22 -9.23 9.10 22.72 0.21 -9.02 16 5 C -0.02 -0.83 6.09 -21.34 -0.13 -0.96 16 6 C -0.38 -18.29 6.26 -19.00 -0.12 -18.41 16 7 C -0.03 -1.21 10.14 71.24 0.72 -0.48 16 8 C 0.28 14.18 6.60 38.74 0.26 14.44 16 9 C -0.46 -22.20 9.03 23.14 0.21 -21.99 16 10 H 0.11 4.90 7.14 -2.91 -0.02 4.88 16 11 C 0.03 1.52 5.48 85.32 0.47 1.99 16 12 N -0.84 -38.39 10.85 21.87 0.24 -38.16 16 13 Si 1.00 33.45 29.57 68.60 2.03 35.48 16 14 H -0.26 -8.49 7.11 99.48 0.71 -7.78 16 15 H -0.25 -8.20 7.11 99.48 0.71 -7.49 16 16 H -0.27 -8.55 7.11 99.48 0.71 -7.84 16 17 N -0.60 -29.78 5.80 -180.07 -1.04 -30.83 16 18 H 0.42 20.52 6.54 -92.71 -0.61 19.91 16 19 C 0.00 -0.03 7.23 39.01 0.28 0.25 16 20 C -0.08 -3.32 9.82 22.37 0.22 -3.10 16 21 C -0.12 -4.77 6.34 22.53 0.14 -4.62 16 22 Cl -0.08 -2.66 28.46 -2.72 -0.08 -2.73 16 23 H 0.06 1.33 7.65 -2.39 -0.02 1.32 16 24 H 0.06 1.32 7.65 -2.39 -0.02 1.31 16 25 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.14 4.94 6.26 -2.91 -0.02 4.93 16 27 H 0.04 1.40 8.14 -2.39 -0.02 1.39 16 28 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.05 1.87 7.38 -2.39 -0.02 1.85 16 30 H 0.30 12.31 8.29 -92.71 -0.77 11.55 16 31 H 0.13 5.05 8.06 -2.91 -0.02 5.03 16 Total: -1.00 -55.13 281.91 4.30 -50.83 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: 0.57 Total: 32.94 kcal Atomic # 6 Polarization: -38.82 SS G_CDS: 3.52 Total: -35.30 kcal Atomic # 7 Polarization: -68.18 SS G_CDS: -0.81 Total: -68.98 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -0.93 Total: -12.23 kcal Atomic # 14 Polarization: 33.45 SS G_CDS: 2.03 Total: 35.48 kcal Atomic # 17 Polarization: -2.66 SS G_CDS: -0.08 Total: -2.73 kcal Total: -55.13 4.30 -50.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527404598.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.844 kcal (2) G-P(sol) polarization free energy of solvation -55.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds