Wall clock time and date at job start Mon Mar 30 2020 06:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36003 * 117.00139 * 2 1 4 4 C 1.37801 * 119.83062 * 0.02562 * 3 2 1 5 5 C 1.40517 * 119.66670 * 180.02562 * 4 3 2 6 6 C 1.40899 * 132.99158 * 180.02562 * 5 4 3 7 7 C 1.39131 * 107.53813 * 179.97438 * 6 5 4 8 8 C 1.39904 * 125.69104 * 180.26394 * 7 6 5 9 9 H 1.08002 * 119.99491 * 160.33050 * 8 7 6 10 10 C 1.40169 * 120.00138 * 340.33127 * 8 7 6 11 11 N 1.30762 * 120.00224 * 162.80923 * 10 8 7 12 12 Si 1.86801 * 119.99753 * 342.80502 * 10 8 7 13 13 H 1.48502 * 109.47191 * 93.23952 * 12 10 8 14 14 H 1.48495 * 109.47089 * 213.23836 * 12 10 8 15 15 H 1.48503 * 109.47166 * 333.24094 * 12 10 8 16 16 N 1.38321 * 108.61973 * 0.02562 * 7 6 5 17 17 C 1.46501 * 125.61773 * 180.02562 * 16 7 6 18 18 C 1.38251 * 108.76330 * 359.97438 * 16 7 6 19 19 C 1.38849 * 132.63962 * 180.02562 * 18 16 7 20 20 C 1.38047 * 120.09055 * 179.97438 * 19 18 16 21 21 Cl 1.73601 * 119.69025 * 180.02562 * 20 19 18 22 22 H 1.09001 * 109.46607 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46858 * 299.99814 * 1 2 3 24 24 H 1.08995 * 109.47723 * 59.99922 * 1 2 3 25 25 H 1.08003 * 120.16701 * 359.97438 * 4 3 2 26 26 H 1.08005 * 126.22843 * 359.97438 * 6 5 4 27 27 H 0.97000 * 119.99883 * 179.97438 * 11 10 8 28 28 H 1.09000 * 109.47157 * 89.97690 * 17 16 7 29 29 H 1.08998 * 109.47091 * 209.96978 * 17 16 7 30 30 H 1.08995 * 109.46995 * 329.97289 * 17 16 7 31 31 H 1.07996 * 119.95679 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2925 2.3653 0.0005 5 6 1.9341 3.6154 0.0000 6 6 1.4558 4.9408 0.0008 7 6 2.5614 5.7855 0.0002 8 6 2.5201 7.1839 0.0059 9 1 3.3857 7.7483 0.3199 10 6 1.3554 7.8524 -0.3959 11 7 1.1828 9.1104 -0.0836 12 14 0.0499 6.9460 -1.3776 13 1 -0.9690 6.3902 -0.4512 14 1 -0.6017 7.8881 -2.3225 15 1 0.6826 5.8393 -2.1392 16 7 3.7081 5.0120 -0.0015 17 6 5.0814 5.5223 -0.0020 18 6 3.3448 3.6781 -0.0014 19 6 4.0831 2.5022 -0.0023 20 6 3.4396 1.2809 -0.0014 21 17 4.3730 -0.1829 -0.0018 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 0.2140 2.3087 0.0005 26 1 0.4196 5.2455 0.0016 27 1 0.3770 9.5730 -0.3620 28 1 5.4226 5.6481 1.0255 29 1 5.7316 4.8148 -0.5166 30 1 5.1116 6.4833 -0.5153 31 1 5.1623 2.5430 -0.0036 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527404620.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:44 Heat of formation + Delta-G solvation = -11.516785 kcal Electronic energy + Delta-G solvation = -17497.594135 eV Core-core repulsion = 14576.745504 eV Total energy + Delta-G solvation = -2920.848631 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.93530 -40.08933 -37.54407 -36.51417 -35.44110 -33.58343 -31.03107 -30.55133 -28.71680 -26.76180 -26.40125 -22.95103 -22.35891 -21.47665 -19.05666 -18.68159 -17.91883 -17.33965 -16.61272 -16.48106 -15.88623 -15.54883 -15.47312 -14.92520 -14.56771 -14.12870 -13.94950 -13.87027 -13.62842 -13.13353 -12.90707 -12.80035 -12.53097 -12.40295 -12.22681 -11.91677 -11.66868 -11.52663 -11.31734 -10.80403 -10.34219 -9.05402 -8.85319 -8.33235 -6.55571 0.16505 0.77303 1.23484 1.34655 1.36425 1.50012 1.81528 2.14428 2.27090 2.50242 2.91511 3.11301 3.85401 4.12391 4.26035 4.44567 4.44747 4.47226 4.55207 4.56770 4.69133 4.76264 4.78076 4.95834 4.98435 5.09193 5.22996 5.48831 5.63217 5.77220 6.03501 6.20038 6.31774 6.57740 6.73830 6.95475 8.00061 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.025521 B = 0.006574 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.853054 B = 4258.377124 C = 5229.915009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.324 6.324 3 C 0.124 3.876 4 C -0.227 4.227 5 C -0.017 4.017 6 C -0.414 4.414 7 C 0.270 3.730 8 C -0.458 4.458 9 H 0.080 0.920 10 C 0.071 3.929 11 N -0.819 5.819 12 Si 0.969 3.031 13 H -0.265 1.265 14 H -0.278 1.278 15 H -0.256 1.256 16 N -0.515 5.515 17 C 0.089 3.911 18 C 0.018 3.982 19 C -0.066 4.066 20 C -0.110 4.110 21 Cl -0.068 7.068 22 H 0.125 0.875 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.135 0.865 26 H 0.117 0.883 27 H 0.303 0.697 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.151 -10.731 -1.335 10.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.238 6.238 3 C 0.078 3.922 4 C -0.247 4.247 5 C -0.022 4.022 6 C -0.436 4.436 7 C 0.162 3.838 8 C -0.490 4.490 9 H 0.098 0.902 10 C -0.150 4.150 11 N -0.443 5.443 12 Si 0.794 3.206 13 H -0.191 1.191 14 H -0.204 1.204 15 H -0.180 1.180 16 N -0.205 5.205 17 C -0.052 4.052 18 C -0.084 4.084 19 C -0.088 4.088 20 C -0.138 4.138 21 Cl -0.040 7.040 22 H 0.143 0.857 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.153 0.847 26 H 0.134 0.866 27 H 0.114 0.886 28 H 0.084 0.916 29 H 0.113 0.887 30 H 0.097 0.903 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.542 -10.692 -1.312 10.882 hybrid contribution -0.718 0.342 -0.130 0.806 sum 0.824 -10.349 -1.442 10.482 Atomic orbital electron populations 1.23256 0.77110 1.05227 1.01694 1.86055 1.22806 1.25737 1.89192 1.18178 0.90257 0.84550 0.99242 1.20447 0.99471 0.89705 1.15063 1.18112 0.92619 0.93289 0.98143 1.20520 0.96559 0.91315 1.35192 1.18144 0.84103 0.90944 0.90640 1.18557 1.01089 0.88498 1.40843 0.90222 1.26474 0.99415 0.95216 0.93853 1.69575 1.28358 1.11755 1.34636 0.85433 0.77900 0.78180 0.79075 1.19139 1.20448 1.17980 1.44295 1.06257 1.03039 1.66927 1.21854 0.79469 1.01039 1.02797 1.18150 0.93514 0.84842 1.11874 1.19536 0.99394 0.87209 1.02628 1.19351 0.88229 0.87245 1.18996 1.98275 1.72630 1.35405 1.97672 0.85714 0.92552 0.92592 0.84745 0.86570 0.88630 0.91622 0.88726 0.90289 0.83715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 9.81 113.37 1.11 1.62 16 2 O -0.32 -10.50 9.93 -93.59 -0.93 -11.43 16 3 C 0.12 4.63 6.67 22.47 0.15 4.78 16 4 C -0.23 -9.07 9.10 22.72 0.21 -8.86 16 5 C -0.02 -0.77 6.14 -21.34 -0.13 -0.90 16 6 C -0.41 -20.36 8.13 23.14 0.19 -20.17 16 7 C 0.27 13.29 6.20 38.74 0.24 13.53 16 8 C -0.46 -23.34 9.29 23.14 0.21 -23.13 16 9 H 0.08 4.16 7.71 -2.91 -0.02 4.14 16 10 C 0.07 3.53 5.50 85.32 0.47 4.00 16 11 N -0.82 -40.76 13.93 21.87 0.30 -40.46 16 12 Si 0.97 41.63 24.53 68.60 1.68 43.32 16 13 H -0.27 -11.19 6.72 99.48 0.67 -10.52 16 14 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 15 H -0.26 -11.66 6.56 99.48 0.65 -11.01 16 16 N -0.51 -22.25 3.25 -529.88 -1.72 -23.97 16 17 C 0.09 2.92 10.79 127.77 1.38 4.30 16 18 C 0.02 0.78 6.81 39.01 0.27 1.04 16 19 C -0.07 -2.42 9.70 22.37 0.22 -2.21 16 20 C -0.11 -4.02 6.34 22.53 0.14 -3.88 16 21 Cl -0.07 -2.13 28.46 -2.72 -0.08 -2.21 16 22 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 23 H 0.06 1.28 7.65 -2.39 -0.02 1.26 16 24 H 0.06 1.27 7.65 -2.39 -0.02 1.25 16 25 H 0.13 4.79 6.26 -2.91 -0.02 4.77 16 26 H 0.12 5.66 4.29 -2.91 -0.01 5.65 16 27 H 0.30 13.47 8.29 -92.71 -0.77 12.70 16 28 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.09 2.50 8.10 -2.39 -0.02 2.48 16 30 H 0.08 2.58 7.57 -2.39 -0.02 2.57 16 31 H 0.15 4.45 8.05 -2.91 -0.02 4.43 16 Total: -1.00 -58.03 276.81 4.78 -53.25 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 1.07 Total: 11.40 kcal Atomic # 6 Polarization: -34.34 SS G_CDS: 4.45 Total: -29.89 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: -1.42 Total: -64.43 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -0.93 Total: -11.43 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 1.68 Total: 43.32 kcal Atomic # 17 Polarization: -2.13 SS G_CDS: -0.08 Total: -2.21 kcal Total: -58.03 4.78 -53.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527404620.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.729 kcal (2) G-P(sol) polarization free energy of solvation -58.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds