Wall clock time and date at job start Mon Mar 30 2020 06:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21291 * 120.00365 * 2 1 4 4 N 1.34777 * 120.00336 * 180.02562 * 2 1 3 5 5 C 1.39895 * 124.97859 * 4.53467 * 4 2 1 6 6 C 1.39618 * 129.32363 * 359.97438 * 5 4 2 7 7 C 1.37834 * 120.30236 * 180.02562 * 6 5 4 8 8 C 1.38402 * 120.20918 * 359.97438 * 7 6 5 9 9 Cl 1.73605 * 120.10048 * 179.97438 * 8 7 6 10 10 C 1.38325 * 119.79912 * 0.21776 * 8 7 6 11 11 C 1.38182 * 120.13830 * 359.57940 * 10 8 7 12 12 C 1.51220 * 130.95362 * 180.12172 * 11 10 8 13 13 C 1.46536 * 124.98747 * 184.53771 * 4 2 1 14 14 H 1.09003 * 110.29310 * 61.07062 * 13 4 2 15 15 C 1.50703 * 110.37902 * 298.97540 * 13 4 2 16 16 H 1.07999 * 119.99540 * 329.16671 * 15 13 4 17 17 C 1.37872 * 119.99640 * 149.17070 * 15 13 4 18 18 N 1.31510 * 120.00353 * 5.01195 * 17 15 13 19 19 Si 1.86802 * 119.99565 * 185.01525 * 17 15 13 20 20 H 1.48498 * 109.47455 * 59.99632 * 19 17 15 21 21 H 1.48501 * 109.47447 * 179.97438 * 19 17 15 22 22 H 1.48508 * 109.47151 * 299.99682 * 19 17 15 23 23 H 1.09002 * 109.47096 * 239.99748 * 1 2 3 24 24 H 1.08994 * 109.46978 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47544 * 119.99794 * 1 2 3 26 26 H 1.08003 * 119.85272 * 0.02562 * 6 5 4 27 27 H 1.07999 * 119.89876 * 179.97438 * 7 6 5 28 28 H 1.07999 * 119.93013 * 179.71657 * 10 8 7 29 29 H 1.09002 * 110.40858 * 299.05283 * 12 11 10 30 30 H 1.08992 * 110.41523 * 61.49724 * 12 11 10 31 31 H 0.97006 * 119.99852 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5924 -2.4330 -0.0917 6 6 0.2431 -2.7759 -0.1977 7 6 -0.1341 -4.0993 -0.2762 8 6 0.8229 -5.0988 -0.2511 9 17 0.3446 -6.7648 -0.3496 10 6 2.1613 -4.7666 -0.1423 11 6 2.5431 -3.4407 -0.0676 12 6 3.9117 -2.8085 0.0516 13 6 3.6375 -1.2964 0.0944 14 1 3.9941 -0.8733 1.0335 15 6 4.3022 -0.6121 -1.0722 16 1 3.8004 -0.5640 -2.0274 17 6 5.5508 -0.0476 -0.9201 18 7 6.2038 -0.1911 0.2123 19 14 6.3148 0.9213 -2.3226 20 1 5.4401 2.0717 -2.6638 21 1 7.6505 1.4214 -1.9089 22 1 6.4612 0.0415 -3.5100 23 1 -0.3633 -0.5139 0.8900 24 1 -0.3633 1.0276 0.0005 25 1 -0.3634 -0.5138 -0.8900 26 1 -0.5086 -2.0006 -0.2182 27 1 -1.1797 -4.3571 -0.3576 28 1 2.9095 -5.5450 -0.1180 29 1 4.4011 -3.1321 0.9703 30 1 4.5233 -3.0598 -0.8148 31 1 7.0822 0.2064 0.3194 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584607545.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:41 Heat of formation + Delta-G solvation = -7.914678 kcal Electronic energy + Delta-G solvation = -17710.561815 eV Core-core repulsion = 14789.869384 eV Total energy + Delta-G solvation = -2920.692432 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.53747 -38.15932 -36.56750 -35.34293 -33.08728 -32.17967 -29.49889 -29.10777 -28.29395 -25.16203 -22.74091 -21.86551 -20.84061 -19.25198 -16.90376 -16.62803 -16.11875 -15.75156 -14.84592 -14.53553 -14.15241 -13.96976 -13.69216 -13.45811 -12.87489 -12.59411 -12.30597 -11.96182 -11.72829 -11.52414 -11.39472 -11.14875 -11.04239 -10.96836 -10.64982 -10.35702 -10.06296 -10.00377 -9.25341 -9.11532 -8.62096 -8.54774 -7.12993 -6.17932 -4.24447 1.41251 1.55278 2.35896 3.22279 3.27545 3.32367 3.38200 3.61643 4.04175 4.36409 4.76693 4.99569 5.11838 5.17839 5.39839 5.48692 5.56621 5.60950 5.67763 5.92333 6.06261 6.19445 6.36292 6.40370 6.45761 6.65505 6.86958 7.06356 7.29192 7.36098 7.75128 7.98602 8.25521 8.75934 8.83686 9.41972 10.88365 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.023715 B = 0.006242 C = 0.005275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.415225 B = 4484.625747 C = 5306.342334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.513 3.487 3 O -0.500 6.500 4 N -0.541 5.541 5 C 0.169 3.831 6 C -0.172 4.172 7 C -0.084 4.084 8 C -0.074 4.074 9 Cl -0.088 7.088 10 C -0.070 4.070 11 C -0.115 4.115 12 C -0.076 4.076 13 C 0.253 3.747 14 H 0.074 0.926 15 C -0.514 4.514 16 H 0.058 0.942 17 C 0.075 3.925 18 N -0.886 5.886 19 Si 0.900 3.100 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.275 1.275 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.140 0.860 27 H 0.130 0.870 28 H 0.130 0.870 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.390 -8.538 0.346 14.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.302 3.698 3 O -0.373 6.373 4 N -0.262 5.262 5 C 0.069 3.931 6 C -0.193 4.193 7 C -0.103 4.103 8 C -0.102 4.102 9 Cl -0.059 7.059 10 C -0.090 4.090 11 C -0.119 4.119 12 C -0.115 4.115 13 C 0.154 3.846 14 H 0.092 0.908 15 C -0.552 4.552 16 H 0.076 0.924 17 C -0.129 4.129 18 N -0.522 5.522 19 Si 0.728 3.272 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.201 1.201 23 H 0.106 0.894 24 H 0.107 0.893 25 H 0.108 0.892 26 H 0.158 0.842 27 H 0.148 0.852 28 H 0.148 0.852 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.878 -7.806 0.458 13.397 hybrid contribution 0.355 0.265 -0.748 0.869 sum -10.522 -7.541 -0.289 12.949 Atomic orbital electron populations 1.22318 0.93092 1.04925 1.03725 1.20439 0.89624 0.82965 0.76780 1.90751 1.70596 1.30101 1.45896 1.47055 1.10551 1.02493 1.66083 1.18689 0.92829 0.86615 0.94972 1.20980 0.93872 0.96495 1.07987 1.20574 0.98712 0.90991 1.00050 1.20504 0.94136 0.84384 1.11148 1.98324 1.92213 1.18250 1.97145 1.20237 0.93904 0.95314 0.99526 1.20483 0.97457 0.91541 1.02407 1.21594 0.91415 0.95989 1.02462 1.19607 0.72926 0.91735 1.00298 0.90828 1.20966 1.01707 1.36776 0.95744 0.92370 1.24906 0.96993 0.94913 0.96124 1.69888 1.13672 1.43869 1.24805 0.86515 0.78138 0.80658 0.81927 1.19904 1.21037 1.20070 0.89413 0.89292 0.89213 0.84248 0.85210 0.85247 0.90895 0.89176 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.52 8.17 36.00 0.29 -2.23 16 2 C 0.51 10.70 7.72 -10.99 -0.08 10.62 16 3 O -0.50 -12.78 16.73 5.55 0.09 -12.69 16 4 N -0.54 -11.60 2.88 -107.06 -0.31 -11.91 16 5 C 0.17 3.07 6.59 -83.55 -0.55 2.52 16 6 C -0.17 -2.47 8.90 -39.21 -0.35 -2.82 16 7 C -0.08 -1.10 9.81 -39.67 -0.39 -1.49 16 8 C -0.07 -1.04 6.32 -39.49 -0.25 -1.29 16 9 Cl -0.09 -1.09 28.96 -51.86 -1.50 -2.59 16 10 C -0.07 -1.09 9.82 -39.57 -0.39 -1.48 16 11 C -0.12 -2.10 6.23 -104.27 -0.65 -2.75 16 12 C -0.08 -1.60 6.57 -27.24 -0.18 -1.78 16 13 C 0.25 6.20 3.09 -68.68 -0.21 5.98 16 14 H 0.07 2.03 7.49 -51.93 -0.39 1.64 16 15 C -0.51 -14.00 7.53 -34.44 -0.26 -14.26 16 16 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 17 C 0.08 2.07 5.45 -17.82 -0.10 1.97 16 18 N -0.89 -24.99 12.90 55.43 0.71 -24.28 16 19 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 20 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 23 H 0.09 1.02 7.31 -51.93 -0.38 0.64 16 24 H 0.09 1.13 8.12 -51.93 -0.42 0.71 16 25 H 0.09 1.08 6.51 -51.93 -0.34 0.74 16 26 H 0.14 1.64 4.22 -52.48 -0.22 1.41 16 27 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 28 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 29 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.09 1.94 7.70 -51.93 -0.40 1.54 16 31 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 280.26 15.07 4.22 4.22 Total: -1.00 -30.35 280.26 -7.88 -38.23 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -2.96 Total: -0.56 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -3.11 Total: -7.00 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.41 Total: -36.19 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.09 Total: -12.69 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -1.50 Total: -2.59 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.35 -7.88 -38.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584607545.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.313 kcal (2) G-P(sol) polarization free energy of solvation -30.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds