Wall clock time and date at job start Mon Mar 30 2020 06:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21291 * 120.00365 * 2 1 4 4 N 1.34777 * 120.00336 * 180.02562 * 2 1 3 5 5 C 1.39895 * 124.97859 * 4.53467 * 4 2 1 6 6 C 1.39618 * 129.32363 * 359.97438 * 5 4 2 7 7 C 1.37834 * 120.30236 * 180.02562 * 6 5 4 8 8 C 1.38402 * 120.20918 * 359.97438 * 7 6 5 9 9 Cl 1.73605 * 120.10048 * 179.97438 * 8 7 6 10 10 C 1.38325 * 119.79912 * 0.21776 * 8 7 6 11 11 C 1.38182 * 120.13830 * 359.57940 * 10 8 7 12 12 C 1.51220 * 130.95362 * 180.12172 * 11 10 8 13 13 C 1.46536 * 124.98747 * 184.53771 * 4 2 1 14 14 H 1.09003 * 110.29310 * 61.07062 * 13 4 2 15 15 C 1.50703 * 110.37902 * 298.97540 * 13 4 2 16 16 H 1.07999 * 119.99540 * 329.16671 * 15 13 4 17 17 C 1.37872 * 119.99640 * 149.17070 * 15 13 4 18 18 N 1.31510 * 120.00353 * 5.01195 * 17 15 13 19 19 Si 1.86802 * 119.99565 * 185.01525 * 17 15 13 20 20 H 1.48498 * 109.47455 * 59.99632 * 19 17 15 21 21 H 1.48501 * 109.47447 * 179.97438 * 19 17 15 22 22 H 1.48508 * 109.47151 * 299.99682 * 19 17 15 23 23 H 1.09002 * 109.47096 * 239.99748 * 1 2 3 24 24 H 1.08994 * 109.46978 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47544 * 119.99794 * 1 2 3 26 26 H 1.08003 * 119.85272 * 0.02562 * 6 5 4 27 27 H 1.07999 * 119.89876 * 179.97438 * 7 6 5 28 28 H 1.07999 * 119.93013 * 179.71657 * 10 8 7 29 29 H 1.09002 * 110.40858 * 299.05283 * 12 11 10 30 30 H 1.08992 * 110.41523 * 61.49724 * 12 11 10 31 31 H 0.97006 * 119.99852 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5924 -2.4330 -0.0917 6 6 0.2431 -2.7759 -0.1977 7 6 -0.1341 -4.0993 -0.2762 8 6 0.8229 -5.0988 -0.2511 9 17 0.3446 -6.7648 -0.3496 10 6 2.1613 -4.7666 -0.1423 11 6 2.5431 -3.4407 -0.0676 12 6 3.9117 -2.8085 0.0516 13 6 3.6375 -1.2964 0.0944 14 1 3.9941 -0.8733 1.0335 15 6 4.3022 -0.6121 -1.0722 16 1 3.8004 -0.5640 -2.0274 17 6 5.5508 -0.0476 -0.9201 18 7 6.2038 -0.1911 0.2123 19 14 6.3148 0.9213 -2.3226 20 1 5.4401 2.0717 -2.6638 21 1 7.6505 1.4214 -1.9089 22 1 6.4612 0.0415 -3.5100 23 1 -0.3633 -0.5139 0.8900 24 1 -0.3633 1.0276 0.0005 25 1 -0.3634 -0.5138 -0.8900 26 1 -0.5086 -2.0006 -0.2182 27 1 -1.1797 -4.3571 -0.3576 28 1 2.9095 -5.5450 -0.1180 29 1 4.4011 -3.1321 0.9703 30 1 4.5233 -3.0598 -0.8148 31 1 7.0822 0.2064 0.3194 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584607545.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:41 Heat of formation + Delta-G solvation = -26.007827 kcal Electronic energy + Delta-G solvation = -17711.346393 eV Core-core repulsion = 14789.869384 eV Total energy + Delta-G solvation = -2921.477010 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.01042 -39.64814 -37.84978 -36.71253 -34.90767 -33.80848 -30.83966 -30.45580 -29.83114 -27.02801 -24.09737 -23.47671 -22.25907 -20.73565 -18.91785 -18.08017 -17.55688 -17.11349 -16.59506 -16.17952 -15.64447 -15.26687 -15.24628 -14.79256 -14.30775 -14.05754 -13.78241 -13.36422 -13.19763 -13.06955 -12.86124 -12.70498 -12.60238 -12.57101 -12.21487 -12.00686 -11.78391 -11.52853 -10.93819 -10.72401 -10.65819 -9.81318 -8.66436 -8.23077 -6.39344 0.14117 0.34835 1.24104 1.31936 1.37206 1.43476 1.74159 2.09471 2.35954 2.76109 3.05390 3.54344 3.65299 3.95846 4.24596 4.30503 4.32484 4.42634 4.53204 4.56285 4.63869 4.85164 4.98759 5.06192 5.21799 5.24419 5.31305 5.42866 5.58930 5.66198 5.84538 6.00807 6.54121 6.82885 7.20471 7.30809 8.79092 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.023715 B = 0.006242 C = 0.005275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.415225 B = 4484.625747 C = 5306.342334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.497 3.503 3 O -0.568 6.568 4 N -0.552 5.552 5 C 0.139 3.861 6 C -0.153 4.153 7 C -0.070 4.070 8 C -0.069 4.069 9 Cl -0.066 7.066 10 C -0.070 4.070 11 C -0.135 4.135 12 C -0.066 4.066 13 C 0.251 3.749 14 H 0.028 0.972 15 C -0.524 4.524 16 H 0.043 0.957 17 C 0.025 3.975 18 N -0.916 5.916 19 Si 0.957 3.043 20 H -0.284 1.284 21 H -0.274 1.274 22 H -0.261 1.261 23 H 0.119 0.881 24 H 0.101 0.899 25 H 0.118 0.882 26 H 0.173 0.827 27 H 0.171 0.829 28 H 0.142 0.858 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.515 -10.446 -0.426 17.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.290 3.710 3 O -0.446 6.446 4 N -0.273 5.273 5 C 0.042 3.958 6 C -0.174 4.174 7 C -0.089 4.089 8 C -0.097 4.097 9 Cl -0.037 7.037 10 C -0.090 4.090 11 C -0.138 4.138 12 C -0.105 4.105 13 C 0.151 3.849 14 H 0.046 0.954 15 C -0.562 4.562 16 H 0.061 0.939 17 C -0.176 4.176 18 N -0.554 5.554 19 Si 0.781 3.219 20 H -0.210 1.210 21 H -0.199 1.199 22 H -0.186 1.186 23 H 0.137 0.863 24 H 0.120 0.880 25 H 0.136 0.864 26 H 0.190 0.810 27 H 0.189 0.811 28 H 0.160 0.840 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.043 -9.784 -0.322 17.118 hybrid contribution 1.195 0.675 -0.478 1.454 sum -12.847 -9.109 -0.800 15.769 Atomic orbital electron populations 1.22336 0.86960 1.06829 1.06320 1.21827 0.92497 0.81754 0.74962 1.90707 1.72505 1.32172 1.49260 1.46864 1.09430 1.04353 1.66662 1.18946 0.94664 0.84702 0.97504 1.21340 0.92389 0.98048 1.05593 1.21045 1.00462 0.89870 0.97541 1.20681 0.93700 0.85932 1.09349 1.98344 1.91866 1.16549 1.96934 1.20336 0.95306 0.94254 0.99059 1.20280 0.95569 0.93016 1.04944 1.21188 0.93467 0.94078 1.01734 1.19249 0.75304 0.93366 0.97011 0.95400 1.21143 1.01988 1.37122 0.95957 0.93902 1.25655 0.97595 0.95966 0.98419 1.69990 1.14012 1.45058 1.26370 0.85639 0.77419 0.79059 0.79736 1.20967 1.19917 1.18566 0.86320 0.88049 0.86413 0.80974 0.81144 0.84033 0.91099 0.90733 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 8.17 71.23 0.58 -3.53 16 2 C 0.50 21.01 7.72 87.66 0.68 21.69 16 3 O -0.57 -30.51 16.73 -3.06 -0.05 -30.56 16 4 N -0.55 -24.22 2.88 -611.01 -1.76 -25.98 16 5 C 0.14 4.88 6.59 38.26 0.25 5.13 16 6 C -0.15 -3.73 8.90 22.51 0.20 -3.53 16 7 C -0.07 -1.46 9.81 22.21 0.22 -1.25 16 8 C -0.07 -1.66 6.32 22.33 0.14 -1.52 16 9 Cl -0.07 -1.36 28.96 -2.72 -0.08 -1.44 16 10 C -0.07 -2.03 9.82 22.28 0.22 -1.81 16 11 C -0.13 -4.86 6.23 -19.64 -0.12 -4.98 16 12 C -0.07 -2.92 6.57 30.26 0.20 -2.72 16 13 C 0.25 13.10 3.09 44.49 0.14 13.23 16 14 H 0.03 1.68 7.49 -2.39 -0.02 1.66 16 15 C -0.52 -30.15 7.53 25.60 0.19 -29.96 16 16 H 0.04 2.52 7.82 -2.91 -0.02 2.50 16 17 C 0.02 1.41 5.45 84.65 0.46 1.87 16 18 N -0.92 -54.49 12.90 21.44 0.28 -54.21 16 19 Si 0.96 45.88 29.54 68.60 2.03 47.91 16 20 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 21 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 23 H 0.12 2.24 7.31 -2.39 -0.02 2.22 16 24 H 0.10 2.30 8.12 -2.39 -0.02 2.28 16 25 H 0.12 2.28 6.51 -2.39 -0.02 2.26 16 26 H 0.17 3.00 4.22 -2.91 -0.01 2.99 16 27 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 28 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 29 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 30 H 0.07 3.41 7.70 -2.39 -0.02 3.40 16 31 H 0.27 15.06 8.31 -92.70 -0.77 14.29 16 Total: -1.00 -72.10 280.26 4.73 -67.37 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: 1.16 Total: 4.28 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 3.16 Total: -7.37 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: -1.48 Total: -80.19 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -0.05 Total: -30.56 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.44 kcal Total: -72.10 4.73 -67.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584607545.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.362 kcal (2) G-P(sol) polarization free energy of solvation -72.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds