Wall clock time and date at job start Mon Mar 30 2020 06:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21289 * 119.99938 * 2 1 4 4 N 1.34772 * 120.00017 * 180.02562 * 2 1 3 5 5 C 1.39889 * 124.98525 * 184.98315 * 4 2 1 6 6 C 1.39630 * 129.31786 * 0.60953 * 5 4 2 7 7 C 1.37833 * 120.30222 * 179.70054 * 6 5 4 8 8 C 1.38400 * 120.20885 * 359.75035 * 7 6 5 9 9 Cl 1.73602 * 120.09927 * 179.97438 * 8 7 6 10 10 C 1.38325 * 119.80058 * 0.02562 * 8 7 6 11 11 C 1.38188 * 120.14078 * 359.97438 * 10 8 7 12 12 C 1.51217 * 130.95892 * 179.97438 * 11 10 8 13 13 C 1.46534 * 124.98315 * 5.27913 * 4 2 1 14 14 H 1.09003 * 110.30039 * 298.90063 * 13 4 2 15 15 C 1.50698 * 110.29898 * 61.03611 * 13 4 2 16 16 H 1.08001 * 119.99985 * 34.95905 * 15 13 4 17 17 C 1.37882 * 120.00450 * 214.96748 * 15 13 4 18 18 N 1.31512 * 119.99912 * 174.95485 * 17 15 13 19 19 Si 1.86797 * 119.99752 * 354.95186 * 17 15 13 20 20 H 1.48500 * 109.46929 * 94.96351 * 19 17 15 21 21 H 1.48496 * 109.47223 * 214.96178 * 19 17 15 22 22 H 1.48499 * 109.47031 * 334.96384 * 19 17 15 23 23 H 1.08995 * 109.46871 * 175.05893 * 1 2 3 24 24 H 1.09003 * 109.47307 * 55.06037 * 1 2 3 25 25 H 1.09000 * 109.46900 * 295.06196 * 1 2 3 26 26 H 1.08004 * 119.84987 * 359.45021 * 6 5 4 27 27 H 1.07995 * 119.89465 * 179.77516 * 7 6 5 28 28 H 1.07996 * 119.93007 * 180.02562 * 10 8 7 29 29 H 1.08995 * 110.41426 * 61.24255 * 12 11 10 30 30 H 1.08999 * 110.51193 * 298.85263 * 12 11 10 31 31 H 0.97001 * 119.99404 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5708 -1.2909 0.0990 6 6 4.5407 -0.2948 0.2276 7 6 5.8746 -0.6304 0.3175 8 6 6.2621 -1.9587 0.2860 9 17 7.9429 -2.3781 0.3988 10 6 5.3062 -2.9510 0.1634 11 6 3.9681 -2.6180 0.0731 12 6 2.7378 -3.4862 -0.0660 13 6 1.5657 -2.4924 -0.1116 14 1 0.8889 -2.6665 0.7250 15 6 0.8259 -2.6175 -1.4185 16 1 1.2094 -2.1335 -2.3046 17 6 -0.3406 -3.3497 -1.4832 18 7 -1.0386 -3.3776 -2.5974 19 14 -0.9295 -4.3022 0.0119 20 1 -1.9049 -3.4787 0.7707 21 1 -1.5818 -5.5614 -0.4287 22 1 0.2299 -4.6235 0.8823 23 1 -0.3633 -1.0238 -0.0885 24 1 -0.3634 0.5886 -0.8424 25 1 -0.3633 0.4353 0.9309 26 1 4.2449 0.7436 0.2528 27 1 6.6196 0.1456 0.4132 28 1 5.6062 -3.9881 0.1391 29 1 2.6408 -4.1486 0.7941 30 1 2.7815 -4.0657 -0.9881 31 1 -1.8591 -3.8930 -2.6430 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584607546.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:42 Heat of formation + Delta-G solvation = -15.857051 kcal Electronic energy + Delta-G solvation = -17776.784425 eV Core-core repulsion = 14855.747586 eV Total energy + Delta-G solvation = -2921.036839 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.63096 -38.20896 -36.67775 -35.60960 -32.88173 -31.88175 -30.38203 -29.15535 -28.04182 -25.35011 -22.86305 -21.63237 -21.01521 -19.03641 -17.55012 -16.72982 -16.05459 -15.87910 -15.05428 -14.44343 -14.18229 -13.94825 -13.66988 -13.12650 -12.89656 -12.85200 -12.43613 -12.02325 -11.94193 -11.79195 -11.45797 -11.20807 -11.13561 -11.05548 -10.66326 -10.51232 -10.39457 -9.96926 -9.34803 -9.25226 -8.94273 -8.55325 -7.20791 -6.46663 -4.51880 1.43531 1.60620 2.36988 2.99331 3.10557 3.12574 3.13521 3.52199 4.04687 4.06886 4.72514 4.94587 5.18582 5.35846 5.40411 5.61440 5.64763 5.79397 5.91023 5.98964 6.04160 6.24043 6.36412 6.44416 6.48155 6.56513 6.63542 6.80844 6.92534 7.17349 7.29789 7.95473 8.12977 8.61608 8.63836 9.10419 10.64282 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.024093 B = 0.006596 C = 0.005532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.905437 B = 4243.956112 C = 5060.363901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.537 3.463 3 O -0.554 6.554 4 N -0.538 5.538 5 C 0.166 3.834 6 C -0.133 4.133 7 C -0.090 4.090 8 C -0.069 4.069 9 Cl -0.087 7.087 10 C -0.076 4.076 11 C -0.119 4.119 12 C -0.087 4.087 13 C 0.225 3.775 14 H 0.054 0.946 15 C -0.533 4.533 16 H 0.083 0.917 17 C 0.085 3.915 18 N -0.873 5.873 19 Si 0.864 3.136 20 H -0.270 1.270 21 H -0.279 1.279 22 H -0.259 1.259 23 H 0.102 0.898 24 H 0.093 0.907 25 H 0.081 0.919 26 H 0.143 0.857 27 H 0.130 0.870 28 H 0.130 0.870 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.714 0.168 7.023 10.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.330 3.670 3 O -0.433 6.433 4 N -0.258 5.258 5 C 0.068 3.932 6 C -0.155 4.155 7 C -0.109 4.109 8 C -0.097 4.097 9 Cl -0.059 7.059 10 C -0.095 4.095 11 C -0.122 4.122 12 C -0.125 4.125 13 C 0.124 3.876 14 H 0.072 0.928 15 C -0.571 4.571 16 H 0.101 0.899 17 C -0.121 4.121 18 N -0.508 5.508 19 Si 0.690 3.310 20 H -0.195 1.195 21 H -0.204 1.204 22 H -0.183 1.183 23 H 0.121 0.879 24 H 0.111 0.889 25 H 0.099 0.901 26 H 0.161 0.839 27 H 0.148 0.852 28 H 0.148 0.852 29 H 0.091 0.909 30 H 0.117 0.883 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.783 0.687 6.915 10.434 hybrid contribution -0.275 -0.681 0.552 0.918 sum 7.508 0.006 7.467 10.589 Atomic orbital electron populations 1.21930 0.90518 1.06904 1.03446 1.20765 0.91091 0.81467 0.73725 1.90585 1.71174 1.31355 1.50219 1.46787 1.03618 1.09322 1.66061 1.18648 0.84944 0.94091 0.95478 1.20867 0.90611 0.99928 1.04045 1.20661 0.95632 0.94217 1.00423 1.20518 0.84160 0.94360 1.10618 1.98321 1.16598 1.93910 1.97031 1.20156 0.90223 0.98816 1.00296 1.20268 0.94179 0.94361 1.03383 1.21683 0.90156 0.97821 1.02878 1.19912 0.92091 0.76860 0.98695 0.92826 1.21042 1.07716 1.34419 0.93948 0.89861 1.24962 0.95413 0.95586 0.96149 1.69880 1.15064 1.39336 1.26500 0.87040 0.79913 0.80744 0.83317 1.19540 1.20439 1.18306 0.87886 0.88874 0.90057 0.83885 0.85187 0.85224 0.90906 0.88332 0.91838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 9.87 36.01 0.36 -2.69 16 2 C 0.54 11.18 7.68 -10.98 -0.08 11.10 16 3 O -0.55 -12.36 15.29 5.55 0.08 -12.27 16 4 N -0.54 -11.25 2.88 -107.06 -0.31 -11.56 16 5 C 0.17 3.29 6.62 -83.55 -0.55 2.74 16 6 C -0.13 -2.41 9.46 -39.21 -0.37 -2.78 16 7 C -0.09 -1.40 9.81 -39.67 -0.39 -1.79 16 8 C -0.07 -1.05 6.32 -39.49 -0.25 -1.30 16 9 Cl -0.09 -1.15 28.96 -51.86 -1.50 -2.65 16 10 C -0.08 -1.20 9.82 -39.57 -0.39 -1.59 16 11 C -0.12 -2.16 6.23 -104.27 -0.65 -2.81 16 12 C -0.09 -1.63 6.57 -27.25 -0.18 -1.81 16 13 C 0.22 4.69 1.95 -68.68 -0.13 4.56 16 14 H 0.05 1.08 5.36 -51.93 -0.28 0.81 16 15 C -0.53 -12.88 7.17 -34.44 -0.25 -13.13 16 16 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 17 C 0.09 2.09 5.18 -17.82 -0.09 2.00 16 18 N -0.87 -23.25 13.96 55.43 0.77 -22.47 16 19 Si 0.86 17.88 27.09 -169.99 -4.61 13.28 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.26 -5.00 6.73 56.52 0.38 -4.62 16 23 H 0.10 2.01 5.30 -51.93 -0.28 1.73 16 24 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 25 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.14 2.67 6.30 -52.48 -0.33 2.34 16 27 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 28 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.10 1.88 7.70 -51.93 -0.40 1.48 16 31 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 277.37 15.07 4.18 4.18 Total: -1.00 -26.75 277.37 -7.34 -34.09 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -2.98 Total: 4.94 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -2.98 Total: -7.52 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.47 Total: -34.03 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.08 Total: -12.27 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -4.61 Total: 13.28 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -1.50 Total: -2.65 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -26.75 -7.34 -34.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584607546.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.230 kcal (2) G-P(sol) polarization free energy of solvation -26.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds