Wall clock time and date at job start Mon Mar 30 2020 06:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21289 * 119.99938 * 2 1 4 4 N 1.34772 * 120.00017 * 180.02562 * 2 1 3 5 5 C 1.39889 * 124.98525 * 184.98315 * 4 2 1 6 6 C 1.39630 * 129.31786 * 0.60953 * 5 4 2 7 7 C 1.37833 * 120.30222 * 179.70054 * 6 5 4 8 8 C 1.38400 * 120.20885 * 359.75035 * 7 6 5 9 9 Cl 1.73602 * 120.09927 * 179.97438 * 8 7 6 10 10 C 1.38325 * 119.80058 * 0.02562 * 8 7 6 11 11 C 1.38188 * 120.14078 * 359.97438 * 10 8 7 12 12 C 1.51217 * 130.95892 * 179.97438 * 11 10 8 13 13 C 1.46534 * 124.98315 * 5.27913 * 4 2 1 14 14 H 1.09003 * 110.30039 * 298.90063 * 13 4 2 15 15 C 1.50698 * 110.29898 * 61.03611 * 13 4 2 16 16 H 1.08001 * 119.99985 * 34.95905 * 15 13 4 17 17 C 1.37882 * 120.00450 * 214.96748 * 15 13 4 18 18 N 1.31512 * 119.99912 * 174.95485 * 17 15 13 19 19 Si 1.86797 * 119.99752 * 354.95186 * 17 15 13 20 20 H 1.48500 * 109.46929 * 94.96351 * 19 17 15 21 21 H 1.48496 * 109.47223 * 214.96178 * 19 17 15 22 22 H 1.48499 * 109.47031 * 334.96384 * 19 17 15 23 23 H 1.08995 * 109.46871 * 175.05893 * 1 2 3 24 24 H 1.09003 * 109.47307 * 55.06037 * 1 2 3 25 25 H 1.09000 * 109.46900 * 295.06196 * 1 2 3 26 26 H 1.08004 * 119.84987 * 359.45021 * 6 5 4 27 27 H 1.07995 * 119.89465 * 179.77516 * 7 6 5 28 28 H 1.07996 * 119.93007 * 180.02562 * 10 8 7 29 29 H 1.08995 * 110.41426 * 61.24255 * 12 11 10 30 30 H 1.08999 * 110.51193 * 298.85263 * 12 11 10 31 31 H 0.97001 * 119.99404 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5708 -1.2909 0.0990 6 6 4.5407 -0.2948 0.2276 7 6 5.8746 -0.6304 0.3175 8 6 6.2621 -1.9587 0.2860 9 17 7.9429 -2.3781 0.3988 10 6 5.3062 -2.9510 0.1634 11 6 3.9681 -2.6180 0.0731 12 6 2.7378 -3.4862 -0.0660 13 6 1.5657 -2.4924 -0.1116 14 1 0.8889 -2.6665 0.7250 15 6 0.8259 -2.6175 -1.4185 16 1 1.2094 -2.1335 -2.3046 17 6 -0.3406 -3.3497 -1.4832 18 7 -1.0386 -3.3776 -2.5974 19 14 -0.9295 -4.3022 0.0119 20 1 -1.9049 -3.4787 0.7707 21 1 -1.5818 -5.5614 -0.4287 22 1 0.2299 -4.6235 0.8823 23 1 -0.3633 -1.0238 -0.0885 24 1 -0.3634 0.5886 -0.8424 25 1 -0.3633 0.4353 0.9309 26 1 4.2449 0.7436 0.2528 27 1 6.6196 0.1456 0.4132 28 1 5.6062 -3.9881 0.1391 29 1 2.6408 -4.1486 0.7941 30 1 2.7815 -4.0657 -0.9881 31 1 -1.8591 -3.8930 -2.6430 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584607546.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:42 Heat of formation + Delta-G solvation = -30.178313 kcal Electronic energy + Delta-G solvation = -17777.405442 eV Core-core repulsion = 14855.747586 eV Total energy + Delta-G solvation = -2921.657855 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.12244 -39.69913 -38.04804 -36.94547 -34.70322 -33.34475 -31.85273 -30.71004 -29.47652 -27.01978 -24.31250 -23.21900 -22.40215 -20.55206 -19.37320 -18.26933 -17.57881 -17.18891 -16.69107 -15.94292 -15.79743 -15.36111 -15.15602 -14.71502 -14.43627 -14.22126 -13.80491 -13.54376 -13.39751 -13.21825 -12.92205 -12.71915 -12.57750 -12.46083 -12.21507 -11.97287 -11.79851 -11.71786 -10.94864 -10.78596 -10.75617 -9.87559 -8.68275 -8.35485 -6.46392 0.06275 0.28224 1.15467 1.38451 1.43600 1.52449 1.57184 2.01786 2.30954 2.68531 2.99407 3.46070 3.86262 3.88529 4.02177 4.22166 4.26724 4.36674 4.40967 4.58049 4.62119 4.86693 4.91446 4.98660 5.10866 5.14166 5.23016 5.39871 5.44037 5.48636 5.85769 6.15261 6.43814 6.63095 7.04205 7.20487 8.79528 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.024093 B = 0.006596 C = 0.005532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.905437 B = 4243.956112 C = 5060.363901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.525 3.475 3 O -0.578 6.578 4 N -0.546 5.546 5 C 0.129 3.871 6 C -0.143 4.143 7 C -0.082 4.082 8 C -0.064 4.064 9 Cl -0.061 7.061 10 C -0.070 4.070 11 C -0.125 4.125 12 C -0.084 4.084 13 C 0.225 3.775 14 H 0.068 0.932 15 C -0.528 4.528 16 H 0.029 0.971 17 C 0.039 3.961 18 N -0.926 5.926 19 Si 0.925 3.075 20 H -0.259 1.259 21 H -0.284 1.284 22 H -0.230 1.230 23 H 0.088 0.912 24 H 0.093 0.907 25 H 0.115 0.885 26 H 0.131 0.869 27 H 0.157 0.843 28 H 0.156 0.844 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.198 -0.919 9.190 13.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.319 3.681 3 O -0.459 6.459 4 N -0.266 5.266 5 C 0.032 3.968 6 C -0.164 4.164 7 C -0.101 4.101 8 C -0.092 4.092 9 Cl -0.032 7.032 10 C -0.089 4.089 11 C -0.128 4.128 12 C -0.122 4.122 13 C 0.124 3.876 14 H 0.085 0.915 15 C -0.566 4.566 16 H 0.047 0.953 17 C -0.163 4.163 18 N -0.563 5.563 19 Si 0.746 3.254 20 H -0.183 1.183 21 H -0.209 1.209 22 H -0.153 1.153 23 H 0.107 0.893 24 H 0.112 0.888 25 H 0.133 0.867 26 H 0.149 0.851 27 H 0.175 0.825 28 H 0.174 0.826 29 H 0.119 0.881 30 H 0.108 0.892 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.310 -0.402 9.095 13.022 hybrid contribution -0.552 -0.286 -0.195 0.652 sum 8.758 -0.688 8.900 12.506 Atomic orbital electron populations 1.21922 0.88757 1.06245 1.05269 1.21264 0.92136 0.81327 0.73400 1.90559 1.71793 1.31951 1.51597 1.46745 1.04500 1.09135 1.66240 1.18994 0.84655 0.95440 0.97701 1.20880 0.91569 0.99131 1.04793 1.20911 0.94997 0.95303 0.98879 1.20637 0.85511 0.94112 1.08908 1.98339 1.14328 1.93717 1.96810 1.20419 0.89220 1.00349 0.98911 1.20318 0.95037 0.93405 1.04076 1.21565 0.89506 0.97458 1.03690 1.19878 0.93053 0.77621 0.97000 0.91480 1.20952 1.08097 1.33800 0.93749 0.95289 1.25730 0.95200 0.96289 0.99041 1.70026 1.15968 1.41022 1.29284 0.86068 0.80439 0.78917 0.79927 1.18339 1.20942 1.15278 0.89306 0.88849 0.86670 0.85143 0.82529 0.82618 0.88095 0.89218 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.88 9.87 71.24 0.70 -5.18 16 2 C 0.53 22.21 7.68 87.66 0.67 22.88 16 3 O -0.58 -26.30 15.29 -3.06 -0.05 -26.35 16 4 N -0.55 -22.98 2.88 -611.02 -1.76 -24.74 16 5 C 0.13 5.05 6.62 38.27 0.25 5.30 16 6 C -0.14 -5.08 9.46 22.51 0.21 -4.87 16 7 C -0.08 -2.36 9.81 22.21 0.22 -2.14 16 8 C -0.06 -1.76 6.32 22.33 0.14 -1.62 16 9 Cl -0.06 -1.39 28.96 -2.72 -0.08 -1.47 16 10 C -0.07 -2.02 9.82 22.28 0.22 -1.80 16 11 C -0.13 -4.36 6.23 -19.64 -0.12 -4.48 16 12 C -0.08 -3.02 6.57 30.26 0.20 -2.82 16 13 C 0.23 9.28 1.95 44.49 0.09 9.37 16 14 H 0.07 2.58 5.36 -2.39 -0.01 2.56 16 15 C -0.53 -26.23 7.17 25.60 0.18 -26.05 16 16 H 0.03 1.72 8.06 -2.91 -0.02 1.69 16 17 C 0.04 1.94 5.18 84.66 0.44 2.38 16 18 N -0.93 -50.98 13.96 21.45 0.30 -50.68 16 19 Si 0.92 35.87 27.09 68.60 1.86 37.73 16 20 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 21 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 22 H -0.23 -7.80 6.73 99.48 0.67 -7.13 16 23 H 0.09 3.46 5.30 -2.39 -0.01 3.45 16 24 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 25 H 0.12 3.30 8.14 -2.39 -0.02 3.28 16 26 H 0.13 4.94 6.30 -2.91 -0.02 4.93 16 27 H 0.16 3.61 8.06 -2.91 -0.02 3.58 16 28 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 29 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 30 H 0.09 3.35 7.70 -2.39 -0.02 3.33 16 31 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -59.67 277.37 4.60 -55.06 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 1.12 Total: 19.47 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: 3.21 Total: -9.03 kcal Atomic # 7 Polarization: -73.96 SS G_CDS: -1.46 Total: -75.42 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.05 Total: -26.35 kcal Atomic # 14 Polarization: 35.87 SS G_CDS: 1.86 Total: 37.73 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.08 Total: -1.47 kcal Total: -59.67 4.60 -55.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584607546.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.886 kcal (2) G-P(sol) polarization free energy of solvation -59.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds