Wall clock time and date at job start Mon Mar 30 2020 06:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50707 * 119.99667 * 2 1 4 4 N 1.46503 * 109.46735 * 125.41730 * 3 2 1 5 5 C 1.46495 * 120.00205 * 276.37074 * 4 3 2 6 6 C 1.50708 * 109.46921 * 270.00130 * 5 4 3 7 7 H 1.08004 * 119.99878 * 359.97438 * 6 5 4 8 8 C 1.37870 * 119.99903 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00309 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 120.00096 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46729 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47174 * 119.99880 * 10 8 6 13 13 H 1.48497 * 109.47126 * 240.00020 * 10 8 6 14 14 C 1.34782 * 119.99878 * 96.37129 * 4 3 2 15 15 O 1.21637 * 120.00062 * 184.91782 * 14 4 3 16 16 C 1.47191 * 119.99613 * 4.91544 * 14 4 3 17 17 C 1.36008 * 123.46514 * 322.01880 * 16 14 4 18 18 S 1.70443 * 110.81622 * 180.02562 * 17 16 14 19 19 C 1.75501 * 92.44990 * 359.84280 * 18 17 16 20 20 C 1.50695 * 124.71796 * 180.20039 * 19 18 17 21 21 C 1.32777 * 110.57052 * 0.29432 * 19 18 17 22 22 H 1.07993 * 120.00290 * 359.97438 * 1 2 3 23 23 H 1.08000 * 119.99604 * 179.97438 * 1 2 3 24 24 H 1.07996 * 120.00603 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47217 * 5.42404 * 3 2 1 26 26 H 1.08994 * 109.47267 * 245.41598 * 3 2 1 27 27 H 1.08996 * 109.47016 * 30.00127 * 5 4 3 28 28 H 1.08999 * 109.47129 * 150.00509 * 5 4 3 29 29 H 0.97002 * 120.00153 * 180.02562 * 9 8 6 30 30 H 1.07994 * 124.58874 * 0.06461 * 17 16 14 31 31 H 1.08995 * 109.47445 * 270.10655 * 20 19 18 32 32 H 1.09002 * 109.47095 * 30.10378 * 20 19 18 33 33 H 1.09002 * 109.47472 * 150.10079 * 20 19 18 34 34 H 1.08002 * 123.45190 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0008 1.3279 1.1257 5 6 2.5368 1.7243 2.4574 6 6 2.6958 3.2140 2.6219 7 1 3.1023 3.8060 1.8152 8 6 2.3234 3.8208 3.8025 9 7 1.8289 3.0998 4.7850 10 14 2.5198 5.6673 4.0062 11 1 3.0942 6.2439 2.7640 12 1 1.1931 6.2801 4.2696 13 1 3.4289 5.9455 5.1469 14 6 4.2901 0.9839 0.9360 15 8 5.0475 0.9160 1.8854 16 6 4.7816 0.6904 -0.4200 17 6 4.0497 0.0288 -1.3562 18 16 4.9284 -0.1350 -2.8074 19 6 6.3184 0.7104 -2.1493 20 6 7.5938 0.9829 -2.9044 21 6 6.0910 1.0748 -0.8929 22 1 -0.5400 0.9352 0.0004 23 1 -0.5399 -0.9353 -0.0004 24 1 1.8501 -0.9352 -0.0004 25 1 1.3591 2.1314 0.0971 26 1 2.6153 1.4061 -0.9344 27 1 1.4864 1.4563 2.5709 28 1 3.1270 1.2100 3.2159 29 1 1.5665 3.5269 5.6156 30 1 3.0473 -0.3419 -1.2011 31 1 8.2871 0.1549 -2.7574 32 1 7.3720 1.0868 -3.9665 33 1 8.0447 1.9042 -2.5356 34 1 6.8094 1.6086 -0.2886 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590038188.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:46 Heat of formation + Delta-G solvation = 22.799593 kcal Electronic energy + Delta-G solvation = -17629.018456 eV Core-core repulsion = 14847.534695 eV Total energy + Delta-G solvation = -2781.483760 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.53345 -36.79727 -35.77280 -33.25244 -32.26201 -31.80545 -27.89353 -26.51481 -25.77528 -24.22262 -22.22990 -20.17358 -19.81548 -18.27354 -17.11195 -16.47293 -16.33787 -15.38958 -14.74316 -14.41947 -14.23047 -13.97077 -13.84031 -13.23032 -12.79874 -12.71650 -12.33480 -12.17023 -11.91139 -11.77444 -11.46479 -11.25810 -11.09923 -10.88655 -10.84530 -10.60537 -10.18726 -9.64382 -9.26190 -9.03147 -8.62855 -8.43667 -8.23254 -7.69062 -6.04110 -4.08997 0.98332 1.61683 2.01261 2.32189 2.43315 3.29914 3.37366 3.41345 3.67643 4.10596 4.44927 4.80305 5.06122 5.18462 5.22285 5.29466 5.32892 5.42182 5.42710 5.57492 5.67179 5.81053 5.98902 6.07227 6.18768 6.22344 6.46071 6.74104 6.87235 7.09890 7.45335 7.53999 7.92559 8.23142 8.38015 8.89145 9.06378 9.56091 11.04034 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.020381 B = 0.005919 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.502333 B = 4729.210636 C = 5584.763131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.178 4.178 3 C 0.123 3.877 4 N -0.583 5.583 5 C 0.246 3.754 6 C -0.527 4.527 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.565 3.435 15 O -0.535 6.535 16 C -0.130 4.130 17 C -0.231 4.231 18 S 0.148 5.852 19 C -0.204 4.204 20 C -0.078 4.078 21 C -0.091 4.091 22 H 0.101 0.899 23 H 0.096 0.904 24 H 0.106 0.894 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.035 0.965 28 H 0.046 0.954 29 H 0.263 0.737 30 H 0.181 0.819 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.187 -6.393 -17.257 18.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.197 4.197 3 C -0.001 4.001 4 N -0.313 5.313 5 C 0.128 3.872 6 C -0.566 4.566 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.350 3.650 15 O -0.413 6.413 16 C -0.148 4.148 17 C -0.368 4.368 18 S 0.413 5.587 19 C -0.321 4.321 20 C -0.137 4.137 21 C -0.120 4.120 22 H 0.119 0.881 23 H 0.114 0.886 24 H 0.124 0.876 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.198 0.802 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.185 -7.046 -17.919 19.516 hybrid contribution 0.116 1.588 1.743 2.360 sum 3.301 -5.458 -16.176 17.388 Atomic orbital electron populations 1.23847 0.95719 1.01934 0.99550 1.23408 0.96478 0.98951 1.00832 1.20910 0.93132 0.95223 0.90851 1.48105 1.07221 1.64301 1.11684 1.19322 0.95325 0.95425 0.77175 1.21477 1.42286 0.92550 1.00283 0.92348 1.24929 0.95060 0.98522 0.95535 1.69948 1.42838 1.35541 1.04936 0.86446 0.77701 0.85094 0.78221 1.19782 1.20936 1.20841 1.17605 0.82567 0.77965 0.86888 1.90768 1.55516 1.52718 1.42320 1.20561 0.94866 1.03366 0.96003 1.26139 1.05449 1.06928 0.98270 1.82763 1.06218 1.55847 1.13838 1.24269 1.01105 1.07983 0.98699 1.20302 0.92009 1.02569 0.98842 1.21070 0.95554 1.01100 0.94303 0.88087 0.88605 0.87591 0.89624 0.89507 0.94746 0.93625 0.92761 0.80226 0.90888 0.91441 0.90527 0.83307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 14.32 29.01 0.42 -1.84 16 2 C -0.18 -2.59 8.32 -36.02 -0.30 -2.89 16 3 C 0.12 2.10 5.35 -5.19 -0.03 2.07 16 4 N -0.58 -12.90 2.44 -177.79 -0.43 -13.34 16 5 C 0.25 6.59 5.21 -5.19 -0.03 6.56 16 6 C -0.53 -15.15 9.39 -34.44 -0.32 -15.47 16 7 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.77 13.29 55.43 0.74 -26.04 16 10 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 14 C 0.56 12.69 7.48 -12.62 -0.09 12.59 16 15 O -0.54 -14.27 16.58 5.24 0.09 -14.19 16 16 C -0.13 -2.30 5.36 -104.63 -0.56 -2.86 16 17 C -0.23 -3.28 8.36 29.93 0.25 -3.03 16 18 S 0.15 1.68 23.00 -107.50 -2.47 -0.79 16 19 C -0.20 -2.55 6.44 -36.18 -0.23 -2.78 16 20 C -0.08 -0.70 10.35 36.00 0.37 -0.33 16 21 C -0.09 -1.43 10.15 -39.02 -0.40 -1.82 16 22 H 0.10 1.30 7.84 -52.49 -0.41 0.88 16 23 H 0.10 1.06 8.06 -52.49 -0.42 0.64 16 24 H 0.11 1.47 7.06 -52.49 -0.37 1.10 16 25 H 0.09 1.50 7.77 -51.93 -0.40 1.10 16 26 H 0.09 1.32 4.89 -51.93 -0.25 1.07 16 27 H 0.03 0.93 8.07 -51.93 -0.42 0.51 16 28 H 0.05 1.38 7.36 -51.93 -0.38 1.00 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.18 2.34 3.93 -52.49 -0.21 2.14 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.15 2.34 8.06 -52.49 -0.42 1.91 16 LS Contribution 305.92 15.07 4.61 4.61 Total: -1.00 -33.19 305.92 -7.62 -40.81 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -4.11 Total: 0.06 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -1.02 Total: -8.11 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.30 Total: -39.37 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: 0.09 Total: -14.19 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.47 Total: -0.79 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.19 -7.62 -40.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590038188.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.607 kcal (2) G-P(sol) polarization free energy of solvation -33.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds