Wall clock time and date at job start Mon Mar 30 2020 06:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50707 * 119.99667 * 2 1 4 4 N 1.46503 * 109.46735 * 125.41730 * 3 2 1 5 5 C 1.46495 * 120.00205 * 276.37074 * 4 3 2 6 6 C 1.50708 * 109.46921 * 270.00130 * 5 4 3 7 7 H 1.08004 * 119.99878 * 359.97438 * 6 5 4 8 8 C 1.37870 * 119.99903 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00309 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 120.00096 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46729 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47174 * 119.99880 * 10 8 6 13 13 H 1.48497 * 109.47126 * 240.00020 * 10 8 6 14 14 C 1.34782 * 119.99878 * 96.37129 * 4 3 2 15 15 O 1.21637 * 120.00062 * 184.91782 * 14 4 3 16 16 C 1.47191 * 119.99613 * 4.91544 * 14 4 3 17 17 C 1.36008 * 123.46514 * 322.01880 * 16 14 4 18 18 S 1.70443 * 110.81622 * 180.02562 * 17 16 14 19 19 C 1.75501 * 92.44990 * 359.84280 * 18 17 16 20 20 C 1.50695 * 124.71796 * 180.20039 * 19 18 17 21 21 C 1.32777 * 110.57052 * 0.29432 * 19 18 17 22 22 H 1.07993 * 120.00290 * 359.97438 * 1 2 3 23 23 H 1.08000 * 119.99604 * 179.97438 * 1 2 3 24 24 H 1.07996 * 120.00603 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47217 * 5.42404 * 3 2 1 26 26 H 1.08994 * 109.47267 * 245.41598 * 3 2 1 27 27 H 1.08996 * 109.47016 * 30.00127 * 5 4 3 28 28 H 1.08999 * 109.47129 * 150.00509 * 5 4 3 29 29 H 0.97002 * 120.00153 * 180.02562 * 9 8 6 30 30 H 1.07994 * 124.58874 * 0.06461 * 17 16 14 31 31 H 1.08995 * 109.47445 * 270.10655 * 20 19 18 32 32 H 1.09002 * 109.47095 * 30.10378 * 20 19 18 33 33 H 1.09002 * 109.47472 * 150.10079 * 20 19 18 34 34 H 1.08002 * 123.45190 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0008 1.3279 1.1257 5 6 2.5368 1.7243 2.4574 6 6 2.6958 3.2140 2.6219 7 1 3.1023 3.8060 1.8152 8 6 2.3234 3.8208 3.8025 9 7 1.8289 3.0998 4.7850 10 14 2.5198 5.6673 4.0062 11 1 3.0942 6.2439 2.7640 12 1 1.1931 6.2801 4.2696 13 1 3.4289 5.9455 5.1469 14 6 4.2901 0.9839 0.9360 15 8 5.0475 0.9160 1.8854 16 6 4.7816 0.6904 -0.4200 17 6 4.0497 0.0288 -1.3562 18 16 4.9284 -0.1350 -2.8074 19 6 6.3184 0.7104 -2.1493 20 6 7.5938 0.9829 -2.9044 21 6 6.0910 1.0748 -0.8929 22 1 -0.5400 0.9352 0.0004 23 1 -0.5399 -0.9353 -0.0004 24 1 1.8501 -0.9352 -0.0004 25 1 1.3591 2.1314 0.0971 26 1 2.6153 1.4061 -0.9344 27 1 1.4864 1.4563 2.5709 28 1 3.1270 1.2100 3.2159 29 1 1.5665 3.5269 5.6156 30 1 3.0473 -0.3419 -1.2011 31 1 8.2871 0.1549 -2.7574 32 1 7.3720 1.0868 -3.9665 33 1 8.0447 1.9042 -2.5356 34 1 6.8094 1.6086 -0.2886 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590038188.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:46 Heat of formation + Delta-G solvation = 2.171209 kcal Electronic energy + Delta-G solvation = -17629.912969 eV Core-core repulsion = 14847.534695 eV Total energy + Delta-G solvation = -2782.378274 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.12676 -38.07961 -37.40080 -35.19760 -33.76936 -33.04339 -29.75325 -27.71185 -27.14370 -25.97248 -23.89727 -21.45216 -21.02273 -19.71148 -18.65268 -18.33655 -17.81819 -17.06774 -16.40016 -16.05602 -15.67962 -15.25374 -14.82706 -14.52824 -14.34813 -14.15358 -13.81133 -13.44669 -13.21071 -13.16746 -12.97826 -12.82945 -12.70320 -12.55829 -12.29001 -12.24606 -11.89634 -11.69303 -10.78274 -10.68020 -10.43659 -9.68622 -9.60697 -9.24286 -8.25703 -6.41150 -0.16319 0.60641 0.90887 1.06682 1.26096 1.34515 1.37023 1.49208 2.04503 2.36585 2.52300 3.03817 3.71601 3.83400 4.02667 4.15016 4.19783 4.34367 4.41351 4.51486 4.78288 4.79079 4.92177 4.98495 5.00019 5.01898 5.16714 5.23309 5.38762 5.46734 5.62865 5.70745 5.88470 6.01578 6.62076 6.68760 7.21128 7.36645 8.82028 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.020381 B = 0.005919 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.502333 B = 4729.210636 C = 5584.763131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.198 4.198 3 C 0.122 3.878 4 N -0.588 5.588 5 C 0.264 3.736 6 C -0.546 4.546 7 H 0.051 0.949 8 C 0.010 3.990 9 N -0.926 5.926 10 Si 0.970 3.030 11 H -0.268 1.268 12 H -0.266 1.266 13 H -0.280 1.280 14 C 0.557 3.443 15 O -0.597 6.597 16 C -0.166 4.166 17 C -0.230 4.230 18 S 0.249 5.751 19 C -0.195 4.195 20 C -0.082 4.082 21 C -0.127 4.127 22 H 0.102 0.898 23 H 0.123 0.877 24 H 0.115 0.885 25 H 0.077 0.923 26 H 0.108 0.892 27 H 0.026 0.974 28 H -0.002 1.002 29 H 0.268 0.732 30 H 0.191 0.809 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.778 -6.423 -20.533 21.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.217 4.217 3 C 0.000 4.000 4 N -0.317 5.317 5 C 0.143 3.857 6 C -0.585 4.585 7 H 0.070 0.930 8 C -0.189 4.189 9 N -0.566 5.566 10 Si 0.794 3.206 11 H -0.192 1.192 12 H -0.191 1.191 13 H -0.206 1.206 14 C 0.345 3.655 15 O -0.480 6.480 16 C -0.184 4.184 17 C -0.367 4.367 18 S 0.516 5.484 19 C -0.312 4.312 20 C -0.140 4.140 21 C -0.156 4.156 22 H 0.120 0.880 23 H 0.141 0.859 24 H 0.133 0.867 25 H 0.095 0.905 26 H 0.125 0.875 27 H 0.044 0.956 28 H 0.016 0.984 29 H 0.077 0.923 30 H 0.208 0.792 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.746 -7.087 -21.254 22.572 hybrid contribution 0.204 1.501 2.640 3.044 sum 2.951 -5.586 -18.614 19.657 Atomic orbital electron populations 1.24113 0.95153 1.03311 0.96394 1.23254 0.97007 0.97833 1.03622 1.21133 0.92450 0.96665 0.89756 1.48086 1.08377 1.63902 1.11316 1.18755 0.93766 0.94254 0.78937 1.21702 1.42724 0.93439 1.00617 0.93033 1.25864 0.94343 1.03772 0.94965 1.70062 1.43283 1.37757 1.05483 0.85339 0.78358 0.78771 0.78166 1.19239 1.19075 1.20567 1.18401 0.81943 0.76624 0.88539 1.90704 1.56946 1.55536 1.44807 1.20170 0.96732 1.07331 0.94191 1.26364 1.06054 1.05001 0.99330 1.82448 1.03322 1.52794 1.09885 1.24767 1.02940 1.05821 0.97676 1.20485 0.90483 1.03382 0.99652 1.20968 0.95034 1.03642 0.95910 0.87965 0.85913 0.86706 0.90462 0.87480 0.95562 0.98403 0.92270 0.79174 0.89364 0.88992 0.90210 0.84979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 14.32 67.78 0.97 -2.69 16 2 C -0.20 -5.60 8.32 25.65 0.21 -5.39 16 3 C 0.12 4.21 5.35 85.63 0.46 4.67 16 4 N -0.59 -27.41 2.44 -834.64 -2.04 -29.45 16 5 C 0.26 15.03 5.21 85.64 0.45 15.47 16 6 C -0.55 -32.76 9.39 25.60 0.24 -32.52 16 7 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 8 C 0.01 0.58 5.46 84.65 0.46 1.04 16 9 N -0.93 -57.11 13.29 21.44 0.28 -56.83 16 10 Si 0.97 45.84 29.54 68.60 2.03 47.86 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 13 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 14 C 0.56 26.62 7.48 86.59 0.65 27.27 16 15 O -0.60 -34.59 16.58 -4.15 -0.07 -34.66 16 16 C -0.17 -5.99 5.36 -19.87 -0.11 -6.10 16 17 C -0.23 -6.15 8.36 67.30 0.56 -5.59 16 18 S 0.25 4.69 23.00 -56.49 -1.30 3.39 16 19 C -0.19 -4.42 6.44 24.51 0.16 -4.26 16 20 C -0.08 -1.20 10.35 71.23 0.74 -0.46 16 21 C -0.13 -4.04 10.15 22.67 0.23 -3.81 16 22 H 0.10 2.44 7.84 -2.91 -0.02 2.42 16 23 H 0.12 2.33 8.06 -2.91 -0.02 2.30 16 24 H 0.12 3.05 7.06 -2.91 -0.02 3.02 16 25 H 0.08 2.75 7.77 -2.39 -0.02 2.73 16 26 H 0.11 3.19 4.89 -2.39 -0.01 3.18 16 27 H 0.03 1.51 8.07 -2.39 -0.02 1.49 16 28 H 0.00 -0.14 7.36 -2.39 -0.02 -0.16 16 29 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 30 H 0.19 4.59 3.93 -2.91 -0.01 4.57 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -77.31 305.92 5.02 -72.28 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 1.10 Total: 9.77 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: 5.02 Total: -12.36 kcal Atomic # 7 Polarization: -84.52 SS G_CDS: -1.75 Total: -86.28 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -0.07 Total: -34.66 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Atomic # 16 Polarization: 4.69 SS G_CDS: -1.30 Total: 3.39 kcal Total: -77.31 5.02 -72.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590038188.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.453 kcal (2) G-P(sol) polarization free energy of solvation -77.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds