Wall clock time and date at job start Mon Mar 30 2020 06:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 119.99832 * 2 1 4 4 H 1.48501 * 109.47229 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47351 * 300.00005 * 3 2 1 6 6 H 1.48494 * 109.47418 * 60.00189 * 3 2 1 7 7 C 1.37879 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99742 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99846 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46578 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46619 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.46810 * 179.97438 * 11 10 9 13 13 N 1.30973 * 126.43573 * 89.98547 * 12 11 10 14 14 C 1.35227 * 105.57914 * 180.02562 * 13 12 11 15 15 C 1.48375 * 126.41551 * 179.97438 * 14 13 12 16 16 C 1.38799 * 121.76698 * 179.74271 * 15 14 13 17 17 C 1.34821 * 114.73601 * 179.76214 * 16 15 14 18 18 S 1.71990 * 105.75914 * 0.44792 * 17 16 15 19 19 N 1.30880 * 121.76777 * 0.02562 * 15 14 13 20 20 N 1.30786 * 107.16879 * 359.97438 * 14 13 12 21 21 O 1.21293 * 110.09351 * 359.97438 * 20 14 13 22 22 H 0.97004 * 119.99703 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.46571 * 60.00481 * 9 7 2 24 24 H 1.08997 * 109.47261 * 300.00186 * 9 7 2 25 25 H 1.08998 * 109.46974 * 60.00220 * 10 9 7 26 26 H 1.08997 * 109.47255 * 299.99919 * 10 9 7 27 27 H 1.09004 * 109.47125 * 59.99953 * 11 10 9 28 28 H 1.08997 * 109.47102 * 299.99843 * 11 10 9 29 29 H 1.07998 * 122.62864 * 359.97438 * 16 15 14 30 30 H 1.07996 * 127.11398 * 180.19407 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4597 -6.1325 -0.0018 13 7 2.9655 -6.7241 1.0516 14 6 3.7870 -7.6840 0.5696 15 6 4.5989 -8.6325 1.3713 16 6 5.4093 -9.5875 0.7731 17 6 6.0879 -10.3713 1.6349 18 16 5.6331 -9.8407 3.2064 19 7 4.5847 -8.6165 2.6799 20 7 3.7318 -7.6198 -0.7355 21 8 2.9747 -6.7360 -1.0776 22 1 -0.4850 0.8401 0.0004 23 1 0.6242 -2.5566 -0.8904 24 1 0.6247 -2.5571 0.8896 25 1 2.8720 -3.6043 0.8895 26 1 2.8721 -3.6043 -0.8905 27 1 0.8540 -5.0446 -0.8914 28 1 0.8534 -5.0451 0.8886 29 1 5.4923 -9.6921 -0.2986 30 1 6.7720 -11.1700 1.3891 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594530895.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:31 Heat of formation + Delta-G solvation = 96.973723 kcal Electronic energy + Delta-G solvation = -16359.979805 eV Core-core repulsion = 13478.172133 eV Total energy + Delta-G solvation = -2881.807672 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -45.54061 -39.32226 -35.94082 -34.95537 -32.97440 -31.66267 -31.37078 -27.85985 -26.61625 -24.25854 -23.27438 -22.37616 -20.49825 -19.75054 -18.46644 -18.03258 -17.64581 -16.32776 -15.96703 -14.82664 -14.68229 -14.48975 -14.37591 -13.78827 -13.62958 -12.64949 -12.62561 -12.12522 -11.82426 -11.78514 -11.50860 -11.05188 -10.96043 -10.95332 -10.87985 -10.59350 -10.32073 -9.97388 -9.84691 -9.45140 -9.13894 -8.93382 -8.38532 -6.03720 -4.06015 0.12919 1.04910 1.05801 1.28717 1.70115 2.73795 2.86945 3.30491 3.34703 3.38319 3.42655 4.01162 4.37993 4.44510 4.74281 4.92072 5.23167 5.32755 5.35278 5.48253 5.53463 5.62022 5.94155 6.04608 6.15181 6.47463 6.62079 6.93883 7.60405 7.71650 7.94974 8.10345 8.36404 9.00430 9.58536 11.07592 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.035748 B = 0.003205 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.074084 B = 8734.231602 C = 9082.342524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.108 4.108 11 C -0.034 4.034 12 C 0.211 3.789 13 N -0.462 5.462 14 C 0.222 3.778 15 C 0.195 3.805 16 C -0.175 4.175 17 C -0.207 4.207 18 S 0.293 5.707 19 N -0.415 5.415 20 N -0.367 5.367 21 O 0.086 5.914 22 H 0.261 0.739 23 H 0.022 0.978 24 H 0.021 0.979 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.102 0.898 28 H 0.110 0.890 29 H 0.166 0.834 30 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.555 -21.321 1.639 23.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.073 4.073 12 C -0.009 4.009 13 N -0.195 5.195 14 C -0.052 4.052 15 C 0.017 3.983 16 C -0.210 4.210 17 C -0.355 4.355 18 S 0.445 5.555 19 N -0.241 5.241 20 N -0.075 5.075 21 O 0.024 5.976 22 H 0.070 0.930 23 H 0.040 0.960 24 H 0.040 0.960 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.121 0.879 28 H 0.128 0.872 29 H 0.183 0.817 30 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 9.707 -21.568 3.754 23.947 hybrid contribution 0.518 0.890 -1.948 2.203 sum 10.225 -20.678 1.806 23.139 Atomic orbital electron populations 1.69966 1.06022 1.26611 1.50770 1.25008 0.94862 0.99292 0.95226 0.86531 0.80136 0.83723 0.77601 1.19741 1.20986 1.20982 1.21236 0.93135 0.90881 1.50729 0.92563 1.19111 0.93769 0.90767 0.97796 1.21763 0.99630 0.91566 1.01675 1.20735 0.93336 0.87288 1.05908 1.29454 0.95934 0.96093 0.79371 1.72175 1.11246 1.07784 1.28268 1.22730 0.98617 0.96679 0.87218 1.18304 0.96605 0.94729 0.88641 1.21196 0.99348 0.96644 1.03805 1.26533 1.04904 1.04999 0.99063 1.84160 1.36067 1.25458 1.09853 1.76963 1.17944 1.16568 1.12588 1.74867 1.10982 1.07611 1.14036 1.85302 1.42312 1.33909 1.36120 0.92979 0.96000 0.96023 0.92251 0.92434 0.87927 0.87159 0.81701 0.79105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.06 5.14 -26.73 -0.14 -2.20 16 11 C -0.03 -0.51 5.84 -27.88 -0.16 -0.67 16 12 C 0.21 3.33 7.75 -12.99 -0.10 3.23 16 13 N -0.46 -8.06 11.58 -9.87 -0.11 -8.17 16 14 C 0.22 3.57 7.97 -156.11 -1.24 2.33 16 15 C 0.19 2.72 6.69 -83.89 -0.56 2.16 16 16 C -0.17 -1.80 9.91 -40.59 -0.40 -2.20 16 17 C -0.21 -1.55 11.39 29.52 0.34 -1.22 16 18 S 0.29 2.70 23.70 -107.50 -2.55 0.15 16 19 N -0.42 -5.94 12.08 32.06 0.39 -5.55 16 20 N -0.37 -5.67 12.06 30.97 0.37 -5.29 16 21 O 0.09 1.32 11.29 18.02 0.20 1.52 16 22 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 23 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 29 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.19 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 290.10 15.07 4.37 4.37 Total: -1.00 -31.69 290.10 -7.36 -39.04 By element: Atomic # 1 Polarization: -2.72 SS G_CDS: -2.92 Total: -5.65 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -2.82 Total: -11.32 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 1.38 Total: -44.51 kcal Atomic # 8 Polarization: 1.32 SS G_CDS: 0.20 Total: 1.52 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -2.55 Total: 0.15 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.69 -7.36 -39.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594530895.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.017 kcal (2) G-P(sol) polarization free energy of solvation -31.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds