Wall clock time and date at job start Mon Mar 30 2020 06:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 119.99832 * 2 1 4 4 H 1.48501 * 109.47229 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47351 * 300.00005 * 3 2 1 6 6 H 1.48494 * 109.47418 * 60.00189 * 3 2 1 7 7 C 1.37879 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99742 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99846 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46578 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46619 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.46810 * 179.97438 * 11 10 9 13 13 N 1.30973 * 126.43573 * 89.98547 * 12 11 10 14 14 C 1.35227 * 105.57914 * 180.02562 * 13 12 11 15 15 C 1.48375 * 126.41551 * 179.97438 * 14 13 12 16 16 C 1.38799 * 121.76698 * 179.74271 * 15 14 13 17 17 C 1.34821 * 114.73601 * 179.76214 * 16 15 14 18 18 S 1.71990 * 105.75914 * 0.44792 * 17 16 15 19 19 N 1.30880 * 121.76777 * 0.02562 * 15 14 13 20 20 N 1.30786 * 107.16879 * 359.97438 * 14 13 12 21 21 O 1.21293 * 110.09351 * 359.97438 * 20 14 13 22 22 H 0.97004 * 119.99703 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.46571 * 60.00481 * 9 7 2 24 24 H 1.08997 * 109.47261 * 300.00186 * 9 7 2 25 25 H 1.08998 * 109.46974 * 60.00220 * 10 9 7 26 26 H 1.08997 * 109.47255 * 299.99919 * 10 9 7 27 27 H 1.09004 * 109.47125 * 59.99953 * 11 10 9 28 28 H 1.08997 * 109.47102 * 299.99843 * 11 10 9 29 29 H 1.07998 * 122.62864 * 359.97438 * 16 15 14 30 30 H 1.07996 * 127.11398 * 180.19407 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4597 -6.1325 -0.0018 13 7 2.9655 -6.7241 1.0516 14 6 3.7870 -7.6840 0.5696 15 6 4.5989 -8.6325 1.3713 16 6 5.4093 -9.5875 0.7731 17 6 6.0879 -10.3713 1.6349 18 16 5.6331 -9.8407 3.2064 19 7 4.5847 -8.6165 2.6799 20 7 3.7318 -7.6198 -0.7355 21 8 2.9747 -6.7360 -1.0776 22 1 -0.4850 0.8401 0.0004 23 1 0.6242 -2.5566 -0.8904 24 1 0.6247 -2.5571 0.8896 25 1 2.8720 -3.6043 0.8895 26 1 2.8721 -3.6043 -0.8905 27 1 0.8540 -5.0446 -0.8914 28 1 0.8534 -5.0451 0.8886 29 1 5.4923 -9.6921 -0.2986 30 1 6.7720 -11.1700 1.3891 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594530895.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:31 Heat of formation + Delta-G solvation = 75.701453 kcal Electronic energy + Delta-G solvation = -16360.902240 eV Core-core repulsion = 13478.172133 eV Total energy + Delta-G solvation = -2882.730107 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -46.74776 -40.16805 -37.28481 -36.40908 -34.76059 -32.96577 -32.43979 -29.55609 -27.65229 -26.01664 -24.36772 -23.58398 -22.16002 -20.75145 -19.26270 -19.21279 -18.85027 -18.32916 -16.95017 -16.56544 -16.07332 -15.65314 -15.56816 -14.79018 -14.49255 -14.35792 -14.06315 -13.80112 -13.14337 -13.10431 -12.68510 -12.65909 -12.52292 -12.45139 -12.26490 -11.77677 -11.62583 -11.55961 -11.33928 -11.07943 -10.82678 -10.51823 -9.76052 -8.17867 -6.27066 -0.74852 -0.01329 0.28881 0.52871 0.65144 1.41525 1.42848 1.54848 1.63800 1.68538 2.32528 2.43702 2.84748 3.16400 3.57855 3.74661 4.14558 4.20101 4.25060 4.32523 4.45277 4.67218 4.72683 4.76662 4.96443 5.02663 5.19692 5.29340 5.54848 5.76834 5.88574 6.27708 6.89295 6.89707 7.41609 8.93743 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.035748 B = 0.003205 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.074084 B = 8734.231602 C = 9082.342524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.959 3.041 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.026 3.974 10 C -0.093 4.093 11 C -0.022 4.022 12 C 0.215 3.785 13 N -0.490 5.490 14 C 0.215 3.785 15 C 0.171 3.829 16 C -0.194 4.194 17 C -0.173 4.173 18 S 0.335 5.665 19 N -0.476 5.476 20 N -0.368 5.368 21 O 0.088 5.912 22 H 0.264 0.736 23 H 0.011 0.989 24 H 0.002 0.998 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.129 0.871 28 H 0.116 0.884 29 H 0.176 0.824 30 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.238 -22.673 1.482 25.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.784 3.216 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.206 1.206 7 C -0.581 4.581 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.132 4.132 11 C -0.061 4.061 12 C -0.005 4.005 13 N -0.223 5.223 14 C -0.059 4.059 15 C -0.006 4.006 16 C -0.228 4.228 17 C -0.321 4.321 18 S 0.487 5.513 19 N -0.302 5.302 20 N -0.076 5.076 21 O 0.026 5.974 22 H 0.072 0.928 23 H 0.029 0.971 24 H 0.021 0.979 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.147 0.853 28 H 0.134 0.866 29 H 0.193 0.807 30 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 11.394 -22.925 3.579 25.850 hybrid contribution 0.067 1.189 -1.821 2.176 sum 11.461 -21.737 1.758 24.636 Atomic orbital electron populations 1.70073 1.07475 1.27654 1.51716 1.25866 0.95747 1.02974 0.94901 0.85492 0.79015 0.79332 0.77778 1.19043 1.20258 1.20551 1.21702 0.93457 0.92588 1.50402 0.92654 1.18995 0.94181 0.91750 0.96236 1.21454 0.98522 0.91924 1.01300 1.20574 0.92878 0.85045 1.07598 1.29344 0.95695 0.96073 0.79350 1.72166 1.12174 1.08774 1.29230 1.23221 0.98453 0.96694 0.87538 1.18554 0.97652 0.95589 0.88758 1.21280 0.99941 0.96865 1.04724 1.27081 1.03373 1.04264 0.97335 1.83972 1.34004 1.23218 1.10069 1.76715 1.20696 1.19699 1.13131 1.74834 1.11100 1.07733 1.13910 1.85284 1.42307 1.33940 1.35858 0.92751 0.97051 0.97932 0.93428 0.91996 0.85332 0.86568 0.80679 0.74537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.02 13.29 21.45 0.28 -54.73 16 2 C 0.00 0.18 5.46 84.65 0.46 0.64 16 3 Si 0.96 43.93 29.54 68.60 2.03 45.95 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.54 -30.20 9.11 25.60 0.23 -29.97 16 8 H 0.06 3.01 7.74 -2.91 -0.02 2.98 16 9 C 0.03 1.25 4.97 29.85 0.15 1.40 16 10 C -0.09 -3.57 5.14 30.60 0.16 -3.42 16 11 C -0.02 -0.67 5.84 29.85 0.17 -0.49 16 12 C 0.22 6.74 7.75 88.36 0.68 7.43 16 13 N -0.49 -17.27 11.58 -302.46 -3.50 -20.77 16 14 C 0.22 6.95 7.97 137.27 1.09 8.05 16 15 C 0.17 4.70 6.69 42.12 0.28 4.99 16 16 C -0.19 -3.63 9.91 21.62 0.21 -3.42 16 17 C -0.17 -1.99 11.39 67.03 0.76 -1.23 16 18 S 0.34 5.48 23.70 -56.49 -1.34 4.14 16 19 N -0.48 -13.48 12.08 -52.48 -0.63 -14.12 16 20 N -0.37 -11.23 12.06 -59.08 -0.71 -11.94 16 21 O 0.09 2.65 11.29 74.56 0.84 3.49 16 22 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 23 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 25 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.13 3.17 8.14 -2.38 -0.02 3.15 16 28 H 0.12 3.36 8.14 -2.39 -0.02 3.34 16 29 H 0.18 2.82 8.06 -2.91 -0.02 2.79 16 30 H 0.24 0.40 8.06 -2.91 -0.02 0.37 16 Total: -1.00 -69.51 290.10 2.34 -67.16 By element: Atomic # 1 Polarization: -4.34 SS G_CDS: 1.16 Total: -3.17 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: 4.21 Total: -16.01 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -4.56 Total: -101.56 kcal Atomic # 8 Polarization: 2.65 SS G_CDS: 0.84 Total: 3.49 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: 5.48 SS G_CDS: -1.34 Total: 4.14 kcal Total: -69.51 2.34 -67.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594530895.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.864 kcal (2) G-P(sol) polarization free energy of solvation -69.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds