Wall clock time and date at job start Mon Mar 30 2020 06:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48507 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47510 * 300.00508 * 3 2 1 6 6 H 1.48506 * 109.47246 * 60.00543 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47242 * 180.02562 * 11 10 9 13 13 N 1.30935 * 126.40560 * 89.70846 * 12 11 10 14 14 C 1.35372 * 105.58109 * 179.97438 * 13 12 11 15 15 C 1.47782 * 126.44795 * 180.09863 * 14 13 12 16 16 C 1.35105 * 126.10404 * 180.27881 * 15 14 13 17 17 N 1.31337 * 114.23837 * 179.97438 * 16 15 14 18 18 C 1.29198 * 117.29282 * 0.02562 * 17 16 15 19 19 S 1.70952 * 110.36003 * 359.74276 * 18 17 16 20 20 N 1.31018 * 107.10565 * 0.34963 * 14 13 12 21 21 O 1.21284 * 110.04955 * 359.78271 * 20 14 13 22 22 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 24 24 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 25 25 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 26 26 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 27 27 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 28 28 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 29 29 H 1.07998 * 122.88354 * 359.97438 * 16 15 14 30 30 H 1.08005 * 124.81918 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4597 -6.1325 -0.0005 13 7 2.9680 -6.7197 1.0536 14 6 3.7883 -7.6834 0.5729 15 6 4.5970 -8.6272 1.3724 16 6 5.4178 -9.5833 0.8850 17 7 6.0262 -10.2931 1.8075 18 6 5.7748 -10.0019 3.0409 19 16 4.6681 -8.7021 3.1314 20 7 3.7346 -7.6183 -0.7346 21 8 2.9775 -6.7344 -1.0761 22 1 -0.4851 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8904 24 1 0.6248 -2.5571 0.8896 25 1 2.8721 -3.6042 -0.8905 26 1 2.8721 -3.6043 0.8895 27 1 0.8535 -5.0450 0.8885 28 1 0.8542 -5.0446 -0.8914 29 1 5.5613 -9.7497 -0.1724 30 1 6.2063 -10.5049 3.8936 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594538092.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:30 Heat of formation + Delta-G solvation = 98.173473 kcal Electronic energy + Delta-G solvation = -16328.080405 eV Core-core repulsion = 13446.324758 eV Total energy + Delta-G solvation = -2881.755647 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -45.52041 -39.94511 -36.12963 -35.23375 -33.17121 -31.70908 -30.26917 -27.82006 -26.38520 -24.37207 -23.73180 -22.40234 -20.53887 -19.94672 -18.93934 -18.01821 -17.14942 -16.36195 -16.12374 -14.82680 -14.78086 -14.53847 -14.32729 -14.20921 -13.92557 -12.69308 -12.66315 -12.19623 -12.06108 -11.89183 -11.54983 -11.10987 -11.02537 -10.90982 -10.63090 -10.35440 -10.07721 -9.89032 -9.57480 -9.47500 -9.20006 -9.05513 -8.41614 -6.06657 -4.09192 -0.03957 0.84514 1.24278 1.35893 2.09830 2.70168 2.85565 3.28277 3.32999 3.36283 3.40414 3.98766 4.01535 4.41743 4.82157 4.89709 5.10361 5.29893 5.40423 5.52838 5.57569 5.70682 5.90052 6.00281 6.42407 6.57130 6.89318 7.25753 7.56685 7.67583 7.91738 8.08614 8.32991 8.97220 9.55599 11.04634 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.034953 B = 0.003327 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.884994 B = 8412.770597 C = 8746.491245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.107 4.107 11 C -0.034 4.034 12 C 0.217 3.783 13 N -0.484 5.484 14 C 0.236 3.764 15 C -0.165 4.165 16 C 0.079 3.921 17 N -0.471 5.471 18 C 0.008 3.992 19 S 0.219 5.781 20 N -0.373 5.373 21 O 0.083 5.917 22 H 0.261 0.739 23 H 0.022 0.978 24 H 0.021 0.979 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.184 0.816 30 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.006 -18.320 4.786 20.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.073 4.073 12 C -0.002 4.002 13 N -0.217 5.217 14 C -0.036 4.036 15 C -0.289 4.289 16 C -0.079 4.079 17 N -0.184 5.184 18 C -0.288 4.288 19 S 0.473 5.527 20 N -0.082 5.082 21 O 0.022 5.978 22 H 0.071 0.929 23 H 0.040 0.960 24 H 0.040 0.960 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.128 0.872 28 H 0.121 0.879 29 H 0.200 0.800 30 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 7.301 -18.710 5.469 20.816 hybrid contribution 0.514 0.885 -0.936 1.387 sum 7.816 -17.826 4.533 19.985 Atomic orbital electron populations 1.69955 1.06030 1.26659 1.50695 1.25002 0.94859 0.99302 0.95188 0.86534 0.80134 0.83706 0.77630 1.19735 1.20967 1.20964 1.21228 0.93126 0.90867 1.50837 0.92568 1.19109 0.93753 0.90763 0.97794 1.21762 0.99629 0.91554 1.01660 1.20740 0.93367 0.87326 1.05914 1.29318 0.95571 0.95817 0.79531 1.72121 1.12278 1.08549 1.28780 1.22376 0.97866 0.95919 0.87403 1.22839 1.06509 1.02925 0.96595 1.22107 0.93365 0.91405 1.01007 1.66321 1.24457 1.27805 0.99815 1.28750 1.01189 1.00280 0.98557 1.84298 1.39066 1.29329 1.00020 1.74977 1.11413 1.07776 1.13994 1.85296 1.42399 1.34141 1.35960 0.92949 0.96004 0.96038 0.92430 0.92288 0.87198 0.87916 0.79957 0.77735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.17 9.11 -34.44 -0.31 -14.49 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -1.99 5.14 -26.73 -0.14 -2.13 16 11 C -0.03 -0.50 5.84 -27.89 -0.16 -0.67 16 12 C 0.22 3.29 7.75 -12.98 -0.10 3.19 16 13 N -0.48 -7.74 11.58 -9.88 -0.11 -7.85 16 14 C 0.24 3.59 8.05 -156.05 -1.26 2.34 16 15 C -0.17 -2.13 6.52 -36.80 -0.24 -2.37 16 16 C 0.08 0.94 11.28 -18.88 -0.21 0.72 16 17 N -0.47 -5.24 10.52 -15.47 -0.16 -5.41 16 18 C 0.01 0.07 12.22 51.65 0.63 0.70 16 19 S 0.22 2.15 23.21 -107.50 -2.50 -0.34 16 20 N -0.37 -5.81 12.18 30.98 0.38 -5.43 16 21 O 0.08 1.26 11.29 17.99 0.20 1.47 16 22 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 23 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 28 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.18 1.96 8.06 -52.49 -0.42 1.53 16 30 H 0.21 0.88 8.06 -52.48 -0.42 0.46 16 LS Contribution 290.29 15.07 4.37 4.37 Total: -1.00 -31.05 290.29 -7.05 -38.10 By element: Atomic # 1 Polarization: -2.13 SS G_CDS: -2.92 Total: -5.06 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -2.03 Total: -10.80 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 0.84 Total: -43.86 kcal Atomic # 8 Polarization: 1.26 SS G_CDS: 0.20 Total: 1.47 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.50 Total: -0.34 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.05 -7.05 -38.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594538092.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.273 kcal (2) G-P(sol) polarization free energy of solvation -31.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds