Wall clock time and date at job start Mon Mar 30 2020 06:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48507 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47510 * 300.00508 * 3 2 1 6 6 H 1.48506 * 109.47246 * 60.00543 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47242 * 180.02562 * 11 10 9 13 13 N 1.30935 * 126.40560 * 89.70846 * 12 11 10 14 14 C 1.35372 * 105.58109 * 179.97438 * 13 12 11 15 15 C 1.47782 * 126.44795 * 180.09863 * 14 13 12 16 16 C 1.35105 * 126.10404 * 180.27881 * 15 14 13 17 17 N 1.31337 * 114.23837 * 179.97438 * 16 15 14 18 18 C 1.29198 * 117.29282 * 0.02562 * 17 16 15 19 19 S 1.70952 * 110.36003 * 359.74276 * 18 17 16 20 20 N 1.31018 * 107.10565 * 0.34963 * 14 13 12 21 21 O 1.21284 * 110.04955 * 359.78271 * 20 14 13 22 22 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 24 24 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 25 25 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 26 26 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 27 27 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 28 28 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 29 29 H 1.07998 * 122.88354 * 359.97438 * 16 15 14 30 30 H 1.08005 * 124.81918 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4597 -6.1325 -0.0005 13 7 2.9680 -6.7197 1.0536 14 6 3.7883 -7.6834 0.5729 15 6 4.5970 -8.6272 1.3724 16 6 5.4178 -9.5833 0.8850 17 7 6.0262 -10.2931 1.8075 18 6 5.7748 -10.0019 3.0409 19 16 4.6681 -8.7021 3.1314 20 7 3.7346 -7.6183 -0.7346 21 8 2.9775 -6.7344 -1.0761 22 1 -0.4851 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8904 24 1 0.6248 -2.5571 0.8896 25 1 2.8721 -3.6042 -0.8905 26 1 2.8721 -3.6043 0.8895 27 1 0.8535 -5.0450 0.8885 28 1 0.8542 -5.0446 -0.8914 29 1 5.5613 -9.7497 -0.1724 30 1 6.2063 -10.5049 3.8936 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594538092.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:30 Heat of formation + Delta-G solvation = 77.536363 kcal Electronic energy + Delta-G solvation = -16328.975297 eV Core-core repulsion = 13446.324758 eV Total energy + Delta-G solvation = -2882.650539 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -46.68466 -40.76763 -37.36736 -36.65341 -34.88168 -33.21919 -31.30588 -29.46875 -27.23636 -26.05323 -24.88702 -23.63663 -22.15825 -20.87196 -19.86756 -19.21099 -18.55082 -18.04266 -17.11272 -16.53526 -16.07102 -15.65906 -15.45512 -15.09976 -14.95605 -14.39464 -14.07189 -13.78319 -13.27867 -13.15988 -12.76172 -12.73461 -12.65127 -12.45625 -12.24976 -11.69849 -11.55840 -11.35594 -11.08573 -10.85561 -10.51675 -10.33852 -10.01640 -8.17702 -6.26837 -0.89890 0.04746 0.09631 0.58617 1.07697 1.41725 1.43382 1.55047 1.68236 1.77005 2.28608 2.43789 2.89854 3.16739 3.28031 3.78290 4.07469 4.19892 4.20269 4.25624 4.37675 4.67055 4.74202 4.91767 4.97388 5.02870 5.20064 5.55150 5.77058 5.88842 6.27875 6.46192 6.89683 6.92922 7.41981 8.93844 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.034953 B = 0.003327 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.884994 B = 8412.770597 C = 8746.491245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.957 3.043 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.026 3.974 10 C -0.093 4.093 11 C -0.023 4.023 12 C 0.219 3.781 13 N -0.499 5.499 14 C 0.237 3.763 15 C -0.209 4.209 16 C 0.089 3.911 17 N -0.497 5.497 18 C 0.037 3.963 19 S 0.235 5.765 20 N -0.387 5.387 21 O 0.079 5.921 22 H 0.264 0.736 23 H 0.009 0.991 24 H 0.004 0.996 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.120 0.880 28 H 0.125 0.875 29 H 0.185 0.815 30 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.140 -19.082 5.685 21.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.783 3.217 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.581 4.581 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.132 4.132 11 C -0.062 4.062 12 C -0.001 4.001 13 N -0.233 5.233 14 C -0.034 4.034 15 C -0.332 4.332 16 C -0.070 4.070 17 N -0.210 5.210 18 C -0.258 4.258 19 S 0.489 5.511 20 N -0.097 5.097 21 O 0.020 5.980 22 H 0.072 0.928 23 H 0.027 0.973 24 H 0.023 0.977 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.138 0.862 28 H 0.143 0.857 29 H 0.202 0.798 30 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 8.432 -19.469 6.366 22.151 hybrid contribution 0.215 1.026 -1.130 1.541 sum 8.647 -18.444 5.236 21.032 Atomic orbital electron populations 1.70060 1.07463 1.27655 1.51715 1.25848 0.95724 1.02930 0.94921 0.85510 0.79037 0.79413 0.77759 1.19040 1.20429 1.20471 1.21700 0.93453 0.92583 1.50382 0.92651 1.18993 0.94183 0.91741 0.96241 1.21451 0.98503 0.91901 1.01325 1.20574 0.92902 0.85063 1.07621 1.29251 0.95391 0.95858 0.79551 1.72114 1.12809 1.09113 1.29234 1.22742 0.97453 0.95755 0.87446 1.22969 1.08051 1.03915 0.98278 1.22225 0.92496 0.90736 1.01533 1.66405 1.25444 1.28484 1.00664 1.29526 0.98868 0.98560 0.98861 1.84237 1.39277 1.29746 0.97794 1.74954 1.12031 1.08304 1.14430 1.85276 1.42506 1.34259 1.35929 0.92757 0.97280 0.97712 0.92345 0.93044 0.86185 0.85723 0.79812 0.73430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.25 13.29 21.45 0.28 -53.96 16 2 C 0.00 0.22 5.46 84.65 0.46 0.68 16 3 Si 0.96 43.27 29.54 68.60 2.03 45.30 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 7 C -0.54 -29.62 9.11 25.60 0.23 -29.39 16 8 H 0.06 2.95 7.74 -2.91 -0.02 2.93 16 9 C 0.03 1.23 4.97 29.85 0.15 1.37 16 10 C -0.09 -3.43 5.14 30.60 0.16 -3.27 16 11 C -0.02 -0.65 5.84 29.85 0.17 -0.47 16 12 C 0.22 6.50 7.75 88.35 0.68 7.18 16 13 N -0.50 -15.69 11.58 -302.30 -3.50 -19.19 16 14 C 0.24 7.14 8.05 136.98 1.10 8.25 16 15 C -0.21 -5.22 6.52 24.07 0.16 -5.06 16 16 C 0.09 2.02 11.28 84.04 0.95 2.97 16 17 N -0.50 -10.03 10.52 -202.87 -2.13 -12.17 16 18 C 0.04 0.50 12.22 130.63 1.60 2.10 16 19 S 0.24 4.18 23.21 -56.49 -1.31 2.87 16 20 N -0.39 -11.99 12.18 -58.82 -0.72 -12.71 16 21 O 0.08 2.38 11.29 74.45 0.84 3.22 16 22 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 23 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 24 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 25 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 28 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 29 H 0.18 3.89 8.06 -2.91 -0.02 3.87 16 30 H 0.25 0.98 8.06 -2.91 -0.02 0.96 16 Total: -1.00 -66.43 290.29 2.32 -64.11 By element: Atomic # 1 Polarization: -3.00 SS G_CDS: 1.16 Total: -1.83 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: 5.66 Total: -15.64 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -6.07 Total: -98.02 kcal Atomic # 8 Polarization: 2.38 SS G_CDS: 0.84 Total: 3.22 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: 4.18 SS G_CDS: -1.31 Total: 2.87 kcal Total: -66.43 2.32 -64.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594538092.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.649 kcal (2) G-P(sol) polarization free energy of solvation -66.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds