Wall clock time and date at job start Mon Mar 30 2020 06:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00476 * 2 1 4 4 H 1.48504 * 109.47092 * 269.99872 * 3 2 1 5 5 H 1.48504 * 109.46693 * 29.99573 * 3 2 1 6 6 H 1.48496 * 109.47527 * 149.99564 * 3 2 1 7 7 C 1.37884 * 120.00141 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00157 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99431 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.46594 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.47020 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.47425 * 180.02562 * 11 10 9 13 13 N 1.30961 * 126.42513 * 89.99427 * 12 11 10 14 14 C 1.35275 * 105.57852 * 179.97438 * 13 12 11 15 15 C 1.48233 * 126.42392 * 179.97438 * 14 13 12 16 16 C 1.34923 * 122.97909 * 180.02562 * 15 14 13 17 17 S 1.76179 * 107.86378 * 180.28412 * 16 15 14 18 18 C 1.70911 * 90.44304 * 359.65793 * 17 16 15 19 19 N 1.28742 * 110.51633 * 0.34780 * 18 17 16 20 20 N 1.30862 * 107.14563 * 0.22854 * 14 13 12 21 21 O 1.21292 * 110.08095 * 359.60399 * 20 14 13 22 22 H 0.97006 * 119.99532 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47086 * 60.00149 * 9 7 2 24 24 H 1.09000 * 109.46985 * 299.99668 * 9 7 2 25 25 H 1.09003 * 109.47798 * 60.00296 * 10 9 7 26 26 H 1.09001 * 109.47637 * 299.99563 * 10 9 7 27 27 H 1.08991 * 109.47015 * 59.99540 * 11 10 9 28 28 H 1.09000 * 109.46726 * 299.99692 * 11 10 9 29 29 H 1.08002 * 126.06427 * 0.02562 * 16 15 14 30 30 H 1.08002 * 124.74349 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 6 1.4801 -4.9871 0.0012 12 6 2.4593 -6.1326 0.0031 13 7 2.9631 -6.7232 1.0578 14 6 3.7848 -7.6848 0.5780 15 6 4.5942 -8.6321 1.3811 16 6 5.3940 -9.5672 0.8276 17 16 6.1544 -10.4704 2.1351 18 6 5.3413 -9.5086 3.2904 19 7 4.5961 -8.6359 2.7068 20 7 3.7353 -7.6181 -0.7280 21 8 2.9762 -6.7367 -1.0715 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 2.8711 -3.6040 0.8923 26 1 2.8725 -3.6048 -0.8877 27 1 0.8544 -5.0450 -0.8894 28 1 0.8525 -5.0447 0.8905 29 1 5.5387 -9.7351 -0.2295 30 1 5.4351 -9.6208 4.3604 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594538994.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:26 Heat of formation + Delta-G solvation = 101.618861 kcal Electronic energy + Delta-G solvation = -16364.970860 eV Core-core repulsion = 13483.364616 eV Total energy + Delta-G solvation = -2881.606244 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -45.44492 -40.04274 -35.91237 -35.03351 -33.07934 -31.67347 -30.32888 -27.75515 -26.27889 -24.44400 -23.94146 -22.14806 -20.49234 -19.88567 -18.95237 -17.94572 -16.99915 -16.32866 -16.11801 -14.89752 -14.81782 -14.70219 -14.41796 -13.92989 -13.67869 -12.61521 -12.57849 -12.21907 -12.05163 -11.81651 -11.47684 -10.97712 -10.94374 -10.85312 -10.59128 -10.19193 -10.03757 -9.89983 -9.82586 -9.45358 -9.16419 -9.01184 -8.37303 -6.02648 -4.04948 0.15005 0.89473 1.16538 1.23070 1.91388 2.93187 2.95766 3.23117 3.32023 3.38426 3.42250 3.83748 4.37805 4.45184 4.88125 4.92123 5.06684 5.33792 5.38744 5.51659 5.63591 5.71151 6.01815 6.09912 6.49823 6.64357 6.95753 7.27043 7.61499 7.73197 7.96013 8.19282 8.37615 9.01249 9.59429 11.08664 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.037987 B = 0.003149 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.921224 B = 8888.565706 C = 9202.193223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.107 4.107 11 C -0.033 4.033 12 C 0.208 3.792 13 N -0.462 5.462 14 C 0.232 3.768 15 C 0.144 3.856 16 C -0.218 4.218 17 S 0.146 5.854 18 C 0.028 3.972 19 N -0.437 5.437 20 N -0.378 5.378 21 O 0.082 5.918 22 H 0.261 0.739 23 H 0.021 0.979 24 H 0.021 0.979 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.187 0.813 30 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.774 -21.623 2.835 23.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.072 4.072 12 C -0.011 4.011 13 N -0.194 5.194 14 C -0.041 4.041 15 C 0.011 3.989 16 C -0.361 4.361 17 S 0.399 5.601 18 C -0.272 4.272 19 N -0.150 5.150 20 N -0.086 5.086 21 O 0.020 5.980 22 H 0.071 0.929 23 H 0.040 0.960 24 H 0.040 0.960 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.120 0.880 28 H 0.128 0.872 29 H 0.205 0.795 30 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 10.516 -22.566 3.193 25.100 hybrid contribution -0.111 1.646 -0.460 1.713 sum 10.404 -20.920 2.734 23.524 Atomic orbital electron populations 1.69952 1.06029 1.26709 1.50697 1.25003 0.94857 0.99269 0.95226 0.86588 0.79878 0.83401 0.78117 1.20639 1.21195 1.19868 1.21203 0.93096 0.90904 1.50838 0.92625 1.19104 0.93768 0.90757 0.97774 1.21756 0.99612 0.91598 1.01634 1.20709 0.93356 0.87339 1.05811 1.29441 0.96041 0.96133 0.79534 1.72190 1.11386 1.07767 1.28091 1.22678 0.98033 0.96274 0.87118 1.16885 0.98471 0.95819 0.87729 1.27168 1.03042 1.00701 1.05174 1.84050 1.44289 1.34852 0.96949 1.28440 0.97838 0.95533 1.05433 1.66044 1.19493 1.21515 1.07947 1.74860 1.11549 1.08159 1.14041 1.85284 1.42342 1.34201 1.36124 0.92928 0.96031 0.96025 0.92269 0.92491 0.88029 0.87235 0.79547 0.77518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.48 9.11 -34.43 -0.31 -14.80 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.09 5.14 -26.73 -0.14 -2.23 16 11 C -0.03 -0.52 5.84 -27.88 -0.16 -0.68 16 12 C 0.21 3.41 7.75 -12.99 -0.10 3.30 16 13 N -0.46 -8.29 11.58 -9.86 -0.11 -8.40 16 14 C 0.23 3.85 8.01 -156.07 -1.25 2.60 16 15 C 0.14 2.04 6.72 -84.62 -0.57 1.47 16 16 C -0.22 -2.29 11.11 29.56 0.33 -1.96 16 17 S 0.15 1.05 23.21 -107.50 -2.50 -1.45 16 18 C 0.03 0.25 12.19 51.47 0.63 0.87 16 19 N -0.44 -6.00 10.55 -12.29 -0.13 -6.13 16 20 N -0.38 -6.09 12.09 30.99 0.37 -5.72 16 21 O 0.08 1.30 11.29 18.03 0.20 1.51 16 22 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 23 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 29 H 0.19 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.21 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 290.18 15.07 4.37 4.37 Total: -1.00 -32.64 290.18 -6.81 -39.45 By element: Atomic # 1 Polarization: -2.10 SS G_CDS: -2.92 Total: -5.02 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -1.81 Total: -9.46 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.87 Total: -45.87 kcal Atomic # 8 Polarization: 1.30 SS G_CDS: 0.20 Total: 1.51 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.50 Total: -1.45 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.64 -6.81 -39.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594538994.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.065 kcal (2) G-P(sol) polarization free energy of solvation -32.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds