Wall clock time and date at job start Mon Mar 30 2020 06:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00476 * 2 1 4 4 H 1.48504 * 109.47092 * 269.99872 * 3 2 1 5 5 H 1.48504 * 109.46693 * 29.99573 * 3 2 1 6 6 H 1.48496 * 109.47527 * 149.99564 * 3 2 1 7 7 C 1.37884 * 120.00141 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00157 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99431 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.46594 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.47020 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.47425 * 180.02562 * 11 10 9 13 13 N 1.30961 * 126.42513 * 89.99427 * 12 11 10 14 14 C 1.35275 * 105.57852 * 179.97438 * 13 12 11 15 15 C 1.48233 * 126.42392 * 179.97438 * 14 13 12 16 16 C 1.34923 * 122.97909 * 180.02562 * 15 14 13 17 17 S 1.76179 * 107.86378 * 180.28412 * 16 15 14 18 18 C 1.70911 * 90.44304 * 359.65793 * 17 16 15 19 19 N 1.28742 * 110.51633 * 0.34780 * 18 17 16 20 20 N 1.30862 * 107.14563 * 0.22854 * 14 13 12 21 21 O 1.21292 * 110.08095 * 359.60399 * 20 14 13 22 22 H 0.97006 * 119.99532 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47086 * 60.00149 * 9 7 2 24 24 H 1.09000 * 109.46985 * 299.99668 * 9 7 2 25 25 H 1.09003 * 109.47798 * 60.00296 * 10 9 7 26 26 H 1.09001 * 109.47637 * 299.99563 * 10 9 7 27 27 H 1.08991 * 109.47015 * 59.99540 * 11 10 9 28 28 H 1.09000 * 109.46726 * 299.99692 * 11 10 9 29 29 H 1.08002 * 126.06427 * 0.02562 * 16 15 14 30 30 H 1.08002 * 124.74349 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 6 1.4801 -4.9871 0.0012 12 6 2.4593 -6.1326 0.0031 13 7 2.9631 -6.7232 1.0578 14 6 3.7848 -7.6848 0.5780 15 6 4.5942 -8.6321 1.3811 16 6 5.3940 -9.5672 0.8276 17 16 6.1544 -10.4704 2.1351 18 6 5.3413 -9.5086 3.2904 19 7 4.5961 -8.6359 2.7068 20 7 3.7353 -7.6181 -0.7280 21 8 2.9762 -6.7367 -1.0715 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 2.8711 -3.6040 0.8923 26 1 2.8725 -3.6048 -0.8877 27 1 0.8544 -5.0450 -0.8894 28 1 0.8525 -5.0447 0.8905 29 1 5.5387 -9.7351 -0.2295 30 1 5.4351 -9.6208 4.3604 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594538994.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:26 Heat of formation + Delta-G solvation = 78.839978 kcal Electronic energy + Delta-G solvation = -16365.958626 eV Core-core repulsion = 13483.364616 eV Total energy + Delta-G solvation = -2882.594010 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -46.67775 -40.86115 -37.27768 -36.49840 -34.83805 -33.19795 -31.35937 -29.45624 -27.15073 -26.02011 -25.27185 -23.42066 -22.16303 -20.90718 -19.80726 -19.20660 -18.52386 -17.95281 -17.04574 -16.53916 -16.06829 -15.75514 -15.71482 -15.30633 -14.39046 -14.36523 -14.08082 -13.80586 -13.14534 -13.10893 -12.88459 -12.70078 -12.63434 -12.46733 -12.22719 -11.62573 -11.56468 -11.34537 -11.04493 -10.77671 -10.63209 -10.51653 -9.87262 -8.17923 -6.27359 -0.66007 0.01548 0.21437 0.52579 0.81679 1.42328 1.42864 1.53765 1.68069 1.94890 2.26013 2.43335 2.69694 3.16194 3.60083 3.82716 4.06672 4.18962 4.20084 4.23682 4.37343 4.69328 4.71728 4.82502 4.98301 5.01927 5.19024 5.54033 5.76168 5.87955 6.27352 6.52163 6.88610 6.96563 7.41232 8.93553 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.037987 B = 0.003149 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.921224 B = 8888.565706 C = 9202.193223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.959 3.041 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.055 0.945 9 C 0.026 3.974 10 C -0.092 4.092 11 C -0.022 4.022 12 C 0.211 3.789 13 N -0.490 5.490 14 C 0.227 3.773 15 C 0.101 3.899 16 C -0.223 4.223 17 S 0.245 5.755 18 C 0.022 3.978 19 N -0.489 5.489 20 N -0.384 5.384 21 O 0.080 5.920 22 H 0.264 0.736 23 H 0.010 0.990 24 H 0.003 0.997 25 H 0.047 0.953 26 H 0.060 0.940 27 H 0.127 0.873 28 H 0.116 0.884 29 H 0.197 0.803 30 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.468 -22.944 3.140 25.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.784 3.216 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.583 4.583 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.131 4.131 11 C -0.060 4.060 12 C -0.009 4.009 13 N -0.223 5.223 14 C -0.046 4.046 15 C -0.032 4.032 16 C -0.366 4.366 17 S 0.499 5.501 18 C -0.277 4.277 19 N -0.203 5.203 20 N -0.093 5.093 21 O 0.021 5.979 22 H 0.073 0.927 23 H 0.029 0.971 24 H 0.021 0.979 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.145 0.855 28 H 0.134 0.866 29 H 0.214 0.786 30 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 12.223 -23.904 3.493 27.074 hybrid contribution -0.538 1.899 -0.501 2.037 sum 11.684 -22.005 2.992 25.094 Atomic orbital electron populations 1.70063 1.07500 1.27743 1.51601 1.25870 0.95750 1.02987 0.94846 0.85538 0.78634 0.78952 0.78479 1.19721 1.20724 1.19246 1.21673 0.93448 0.92592 1.50601 0.92667 1.18987 0.94158 0.91735 0.96213 1.21447 0.98514 0.91952 1.01213 1.20550 0.92893 0.85116 1.07472 1.29358 0.95825 0.96134 0.79545 1.72178 1.12352 1.08783 1.29006 1.23236 0.97700 0.96195 0.87425 1.16979 1.00511 0.97315 0.88369 1.27501 1.02003 1.00052 1.07062 1.83728 1.41208 1.31678 0.93506 1.29046 0.96603 0.94592 1.07418 1.66017 1.22070 1.24131 1.08109 1.74819 1.11938 1.08480 1.14042 1.85259 1.42437 1.34314 1.35915 0.92723 0.97125 0.97893 0.93434 0.92146 0.85523 0.86600 0.78586 0.74248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.31 13.29 21.45 0.28 -55.02 16 2 C 0.00 0.20 5.46 84.66 0.46 0.67 16 3 Si 0.96 44.09 29.54 68.60 2.03 46.12 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.55 -30.54 9.11 25.60 0.23 -30.31 16 8 H 0.06 3.02 7.74 -2.91 -0.02 2.99 16 9 C 0.03 1.31 4.97 29.85 0.15 1.45 16 10 C -0.09 -3.63 5.14 30.60 0.16 -3.47 16 11 C -0.02 -0.67 5.84 29.85 0.17 -0.49 16 12 C 0.21 6.92 7.75 88.36 0.68 7.60 16 13 N -0.49 -17.86 11.58 -302.35 -3.50 -21.36 16 14 C 0.23 7.63 8.01 137.19 1.10 8.72 16 15 C 0.10 2.83 6.72 40.93 0.27 3.11 16 16 C -0.22 -4.33 11.11 67.06 0.75 -3.59 16 17 S 0.25 2.72 23.21 -56.49 -1.31 1.41 16 18 C 0.02 0.34 12.19 130.70 1.59 1.94 16 19 N -0.49 -13.14 10.55 -192.80 -2.03 -15.17 16 20 N -0.38 -12.39 12.09 -58.95 -0.71 -13.10 16 21 O 0.08 2.56 11.29 74.58 0.84 3.40 16 22 H 0.26 14.79 8.31 -92.70 -0.77 14.02 16 23 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 25 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.13 3.28 8.14 -2.39 -0.02 3.26 16 28 H 0.12 3.46 8.14 -2.39 -0.02 3.45 16 29 H 0.20 3.22 8.06 -2.91 -0.02 3.19 16 30 H 0.24 1.65 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -71.58 290.18 2.33 -69.25 By element: Atomic # 1 Polarization: -2.31 SS G_CDS: 1.16 Total: -1.14 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: 5.57 Total: -14.37 kcal Atomic # 7 Polarization: -98.69 SS G_CDS: -5.96 Total: -104.66 kcal Atomic # 8 Polarization: 2.56 SS G_CDS: 0.84 Total: 3.40 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -1.31 Total: 1.41 kcal Total: -71.58 2.33 -69.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594538994.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.092 kcal (2) G-P(sol) polarization free energy of solvation -71.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds