Wall clock time and date at job start Mon Mar 30 2020 06:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33895 * 122.08220 * 2 1 4 4 S 1.76258 * 108.17853 * 179.97438 * 3 2 1 5 5 C 1.76181 * 89.82329 * 359.97438 * 4 3 2 6 6 C 1.47949 * 125.46479 * 180.02562 * 5 4 3 7 7 N 1.30921 * 126.43149 * 179.97438 * 6 5 4 8 8 O 1.21294 * 110.06321 * 179.76404 * 7 6 5 9 9 C 1.33690 * 110.05759 * 0.42995 * 8 7 6 10 10 C 1.50701 * 126.41249 * 179.83643 * 9 8 7 11 11 H 1.09002 * 109.47060 * 179.68782 * 10 9 8 12 12 C 1.52997 * 109.47212 * 59.68727 * 10 9 8 13 13 C 1.50699 * 109.47269 * 299.68636 * 10 9 8 14 14 H 1.08000 * 119.99792 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99902 * 179.97438 * 13 10 9 16 16 N 1.31515 * 120.00126 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99745 * 180.02562 * 15 13 10 18 18 H 1.48496 * 109.47319 * 60.00570 * 17 15 13 19 19 H 1.48503 * 109.46734 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47266 * 300.00384 * 17 15 13 21 21 N 1.30931 * 107.16755 * 359.57661 * 9 8 7 22 22 N 1.30191 * 109.06486 * 0.26624 * 5 4 3 23 23 H 1.09006 * 109.47289 * 90.00155 * 1 2 3 24 24 H 1.08996 * 109.47132 * 209.99776 * 1 2 3 25 25 H 1.09001 * 109.47614 * 330.00548 * 1 2 3 26 26 H 1.07999 * 125.91093 * 0.03217 * 3 2 1 27 27 H 1.08998 * 109.47533 * 59.99628 * 12 10 9 28 28 H 1.08996 * 109.47853 * 179.97438 * 12 10 9 29 29 H 1.09002 * 109.47153 * 299.99998 * 12 10 9 30 30 H 0.96999 * 120.00073 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2181 1.1345 0.0000 4 16 3.9291 0.7109 0.0007 5 6 3.5005 -0.9979 0.0018 6 6 4.4604 -2.1237 0.0033 7 7 4.1634 -3.3988 0.0046 8 8 5.1786 -4.0625 0.0010 9 6 6.2496 -3.2624 0.0064 10 6 7.6921 -3.6985 0.0078 11 1 8.3373 -2.8200 0.0070 12 6 7.9723 -4.5382 -1.2401 13 6 7.9666 -4.5222 1.2396 14 1 7.1755 -4.7113 1.9501 15 6 9.2275 -5.0352 1.4589 16 7 10.1907 -4.8053 0.5934 17 14 9.5676 -6.0568 2.9854 18 1 8.6883 -7.2535 2.9862 19 1 10.9891 -6.4865 2.9868 20 1 9.2959 -5.2422 4.1969 21 7 5.8105 -2.0289 0.0045 22 7 2.2035 -1.1111 -0.0042 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5137 26 1 1.8134 2.1358 0.0005 27 1 7.7737 -3.9425 -2.1310 28 1 9.0157 -4.8533 -1.2394 29 1 7.3271 -5.4167 -1.2393 30 1 11.0778 -5.1659 0.7479 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596582110.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:43 Heat of formation + Delta-G solvation = 105.260965 kcal Electronic energy + Delta-G solvation = -16886.918628 eV Core-core repulsion = 14005.470317 eV Total energy + Delta-G solvation = -2881.448310 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.93362 -39.79861 -35.52278 -34.86646 -32.57440 -31.51900 -29.72788 -27.83329 -26.12110 -25.43155 -23.61993 -22.56960 -20.72595 -19.04440 -18.11918 -17.53243 -16.81045 -16.09004 -15.63400 -15.00165 -14.97277 -13.91235 -13.87745 -13.38130 -12.97677 -12.87265 -12.66818 -12.02235 -11.80593 -11.41605 -11.35272 -11.13339 -11.03905 -10.77315 -10.61414 -10.39528 -10.18891 -9.86003 -9.83031 -9.46973 -9.12373 -8.61280 -8.53480 -6.26015 -4.35998 0.24533 1.11132 1.61910 1.83889 2.43766 3.14257 3.24333 3.28472 3.30695 3.33389 3.66151 4.26824 4.44960 4.76998 4.94232 5.05039 5.08356 5.40517 5.42989 5.52120 5.73096 6.05744 6.27284 6.39663 6.56332 6.74421 6.79317 7.31636 7.56258 7.58048 7.74763 7.94452 8.62471 8.71849 9.30786 10.80109 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.037893 B = 0.004275 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.753080 B = 6548.637802 C = 6627.410286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.065 3.935 3 C -0.262 4.262 4 S 0.168 5.832 5 C 0.154 3.846 6 C 0.209 3.791 7 N -0.356 5.356 8 O 0.088 5.912 9 C 0.255 3.745 10 C 0.125 3.875 11 H 0.079 0.921 12 C -0.140 4.140 13 C -0.527 4.527 14 H 0.063 0.937 15 C 0.072 3.928 16 N -0.884 5.884 17 Si 0.905 3.095 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.275 1.275 21 N -0.501 5.501 22 N -0.443 5.443 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.182 0.818 27 H 0.018 0.982 28 H 0.103 0.897 29 H 0.041 0.959 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.885 9.887 -2.202 15.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.069 4.069 3 C -0.403 4.403 4 S 0.422 5.578 5 C -0.122 4.122 6 C -0.063 4.063 7 N -0.065 5.065 8 O 0.025 5.975 9 C 0.036 3.964 10 C 0.104 3.896 11 H 0.096 0.904 12 C -0.198 4.198 13 C -0.565 4.565 14 H 0.081 0.919 15 C -0.131 4.131 16 N -0.521 5.521 17 Si 0.732 3.268 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.200 1.200 21 N -0.235 5.235 22 N -0.160 5.160 23 H 0.094 0.906 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.200 0.800 27 H 0.037 0.963 28 H 0.121 0.879 29 H 0.060 0.940 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.724 10.073 -2.247 15.620 hybrid contribution -0.544 -0.516 0.830 1.119 sum -12.268 9.557 -1.417 15.615 Atomic orbital electron populations 1.20395 0.86899 1.03445 1.03045 1.20173 0.98494 0.86060 1.02173 1.27089 0.96126 1.03915 1.13134 1.85208 1.04853 1.01020 1.66712 1.23507 0.90310 0.93341 1.05061 1.22193 0.88872 0.89565 1.05682 1.75046 1.07789 1.04523 1.19135 1.85325 1.11231 1.35938 1.64976 1.30206 0.95748 0.82133 0.88264 1.17928 0.76112 0.98270 0.97242 0.90361 1.21877 1.05581 0.98443 0.93943 1.20825 0.96744 1.33567 1.05414 0.91861 1.24863 0.95527 0.95748 0.97006 1.69835 1.02464 1.44533 1.35218 0.86432 0.77383 0.80475 0.82542 1.19811 1.20943 1.20006 1.72091 1.04968 1.22428 1.23968 1.66247 1.03701 1.31228 1.14801 0.90569 0.90440 0.90622 0.80041 0.96282 0.87891 0.93997 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.28 36.00 0.37 -0.35 16 2 C 0.07 0.85 6.69 -84.42 -0.56 0.29 16 3 C -0.26 -2.93 11.09 29.21 0.32 -2.61 16 4 S 0.17 2.33 23.43 -107.50 -2.52 -0.19 16 5 C 0.15 2.78 7.54 -14.27 -0.11 2.67 16 6 C 0.21 4.39 8.12 -156.09 -1.27 3.12 16 7 N -0.36 -7.81 12.21 30.97 0.38 -7.44 16 8 O 0.09 1.96 11.29 17.98 0.20 2.16 16 9 C 0.25 5.73 6.94 -12.98 -0.09 5.64 16 10 C 0.12 2.95 2.77 -92.92 -0.26 2.70 16 11 H 0.08 1.94 8.14 -51.93 -0.42 1.52 16 12 C -0.14 -3.08 8.95 37.16 0.33 -2.75 16 13 C -0.53 -13.52 8.55 -34.44 -0.29 -13.82 16 14 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 15 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 16 N -0.88 -22.99 11.32 55.43 0.63 -22.36 16 17 Si 0.90 20.05 29.54 -169.99 -5.02 15.02 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 21 N -0.50 -10.93 11.58 -9.90 -0.11 -11.05 16 22 N -0.44 -7.59 10.54 -7.53 -0.08 -7.66 16 23 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 26 H 0.18 1.33 8.06 -52.49 -0.42 0.90 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.10 2.43 6.07 -51.93 -0.32 2.12 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.27 6.65 8.31 -40.82 -0.34 6.32 16 LS Contribution 286.46 15.07 4.32 4.32 Total: -1.00 -27.92 286.46 -6.67 -34.59 By element: Atomic # 1 Polarization: -1.22 SS G_CDS: -2.81 Total: -4.04 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -1.65 Total: -3.36 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.81 Total: -48.51 kcal Atomic # 8 Polarization: 1.96 SS G_CDS: 0.20 Total: 2.16 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -2.52 Total: -0.19 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.92 -6.67 -34.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596582110.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.850 kcal (2) G-P(sol) polarization free energy of solvation -27.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds