Wall clock time and date at job start Mon Mar 30 2020 06:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33895 * 122.08220 * 2 1 4 4 S 1.76258 * 108.17853 * 179.97438 * 3 2 1 5 5 C 1.76181 * 89.82329 * 359.97438 * 4 3 2 6 6 C 1.47949 * 125.46479 * 180.02562 * 5 4 3 7 7 N 1.30921 * 126.43149 * 179.97438 * 6 5 4 8 8 O 1.21294 * 110.06321 * 179.76404 * 7 6 5 9 9 C 1.33690 * 110.05759 * 0.42995 * 8 7 6 10 10 C 1.50701 * 126.41249 * 179.83643 * 9 8 7 11 11 H 1.09002 * 109.47060 * 179.68782 * 10 9 8 12 12 C 1.52997 * 109.47212 * 59.68727 * 10 9 8 13 13 C 1.50699 * 109.47269 * 299.68636 * 10 9 8 14 14 H 1.08000 * 119.99792 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99902 * 179.97438 * 13 10 9 16 16 N 1.31515 * 120.00126 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99745 * 180.02562 * 15 13 10 18 18 H 1.48496 * 109.47319 * 60.00570 * 17 15 13 19 19 H 1.48503 * 109.46734 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47266 * 300.00384 * 17 15 13 21 21 N 1.30931 * 107.16755 * 359.57661 * 9 8 7 22 22 N 1.30191 * 109.06486 * 0.26624 * 5 4 3 23 23 H 1.09006 * 109.47289 * 90.00155 * 1 2 3 24 24 H 1.08996 * 109.47132 * 209.99776 * 1 2 3 25 25 H 1.09001 * 109.47614 * 330.00548 * 1 2 3 26 26 H 1.07999 * 125.91093 * 0.03217 * 3 2 1 27 27 H 1.08998 * 109.47533 * 59.99628 * 12 10 9 28 28 H 1.08996 * 109.47853 * 179.97438 * 12 10 9 29 29 H 1.09002 * 109.47153 * 299.99998 * 12 10 9 30 30 H 0.96999 * 120.00073 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2181 1.1345 0.0000 4 16 3.9291 0.7109 0.0007 5 6 3.5005 -0.9979 0.0018 6 6 4.4604 -2.1237 0.0033 7 7 4.1634 -3.3988 0.0046 8 8 5.1786 -4.0625 0.0010 9 6 6.2496 -3.2624 0.0064 10 6 7.6921 -3.6985 0.0078 11 1 8.3373 -2.8200 0.0070 12 6 7.9723 -4.5382 -1.2401 13 6 7.9666 -4.5222 1.2396 14 1 7.1755 -4.7113 1.9501 15 6 9.2275 -5.0352 1.4589 16 7 10.1907 -4.8053 0.5934 17 14 9.5676 -6.0568 2.9854 18 1 8.6883 -7.2535 2.9862 19 1 10.9891 -6.4865 2.9868 20 1 9.2959 -5.2422 4.1969 21 7 5.8105 -2.0289 0.0045 22 7 2.2035 -1.1111 -0.0042 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5137 26 1 1.8134 2.1358 0.0005 27 1 7.7737 -3.9425 -2.1310 28 1 9.0157 -4.8533 -1.2394 29 1 7.3271 -5.4167 -1.2393 30 1 11.0778 -5.1659 0.7479 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596582110.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:43 Heat of formation + Delta-G solvation = 86.870888 kcal Electronic energy + Delta-G solvation = -16887.716081 eV Core-core repulsion = 14005.470317 eV Total energy + Delta-G solvation = -2882.245764 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -46.60092 -40.89190 -37.24354 -36.62277 -34.15232 -32.86810 -31.44868 -28.69488 -27.46120 -27.36284 -25.36471 -24.11905 -22.24269 -20.21424 -19.52692 -19.14403 -18.37417 -17.93925 -17.01437 -16.75925 -16.04458 -15.66625 -14.99095 -14.75207 -14.46238 -13.80328 -13.76451 -13.56524 -13.36073 -13.11959 -12.85627 -12.76079 -12.55599 -12.36589 -12.28072 -12.22358 -11.98012 -11.54143 -11.00802 -10.97062 -10.58156 -10.55547 -9.69844 -8.21397 -6.38042 -0.95729 -0.02252 0.21907 0.58616 1.04323 1.47959 1.48689 1.56604 1.81072 1.85854 2.03154 2.42437 3.02375 3.11057 3.42167 3.99160 4.14892 4.21792 4.53225 4.61093 4.74472 4.77087 4.80197 4.86271 4.91216 4.99474 5.29354 5.40944 5.65119 5.82931 6.03787 6.48438 6.63162 7.03375 7.31390 8.84144 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.037893 B = 0.004275 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.753080 B = 6548.637802 C = 6627.410286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.038 3.962 3 C -0.219 4.219 4 S 0.194 5.806 5 C 0.089 3.911 6 C 0.220 3.780 7 N -0.377 5.377 8 O 0.076 5.924 9 C 0.248 3.752 10 C 0.127 3.873 11 H 0.062 0.938 12 C -0.130 4.130 13 C -0.547 4.547 14 H 0.053 0.947 15 C 0.035 3.965 16 N -0.902 5.902 17 Si 0.961 3.039 18 H -0.270 1.270 19 H -0.276 1.276 20 H -0.275 1.275 21 N -0.506 5.506 22 N -0.460 5.460 23 H 0.088 0.912 24 H 0.066 0.934 25 H 0.109 0.891 26 H 0.232 0.768 27 H 0.037 0.963 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.308 11.782 -1.938 17.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.095 4.095 3 C -0.359 4.359 4 S 0.447 5.553 5 C -0.184 4.184 6 C -0.053 4.053 7 N -0.089 5.089 8 O 0.017 5.983 9 C 0.029 3.971 10 C 0.107 3.893 11 H 0.080 0.920 12 C -0.188 4.188 13 C -0.585 4.585 14 H 0.071 0.929 15 C -0.167 4.167 16 N -0.539 5.539 17 Si 0.786 3.214 18 H -0.195 1.195 19 H -0.200 1.200 20 H -0.200 1.200 21 N -0.240 5.240 22 N -0.179 5.179 23 H 0.106 0.894 24 H 0.085 0.915 25 H 0.127 0.873 26 H 0.248 0.752 27 H 0.056 0.944 28 H 0.106 0.894 29 H 0.062 0.938 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.129 11.932 -1.991 17.852 hybrid contribution -0.235 -0.885 0.728 1.170 sum -13.363 11.046 -1.263 17.384 Atomic orbital electron populations 1.20534 0.84091 1.04598 1.04205 1.20810 1.00226 0.85544 1.02966 1.27734 0.94160 1.05526 1.08451 1.85076 1.06928 0.97957 1.65325 1.23390 0.90577 0.94363 1.10103 1.22713 0.88997 0.90179 1.03407 1.75001 1.07539 1.05268 1.21096 1.85293 1.11227 1.36152 1.65588 1.29955 0.95567 0.82604 0.88933 1.17754 0.76636 0.97522 0.97402 0.92018 1.21731 1.04479 0.98537 0.94059 1.21008 0.96920 1.34431 1.06173 0.92866 1.25524 0.95228 0.96508 0.99433 1.69918 1.02735 1.44945 1.36332 0.85556 0.77522 0.79025 0.79305 1.19535 1.20039 1.20041 1.72064 1.05779 1.22061 1.24140 1.66223 1.03811 1.33886 1.13943 0.89363 0.91530 0.87268 0.75163 0.94403 0.89422 0.93790 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.28 71.24 0.73 -0.39 16 2 C 0.04 0.89 6.69 41.67 0.28 1.17 16 3 C -0.22 -3.96 11.09 66.83 0.74 -3.22 16 4 S 0.19 4.99 23.43 -56.49 -1.32 3.66 16 5 C 0.09 3.20 7.54 87.51 0.66 3.86 16 6 C 0.22 9.41 8.12 137.07 1.11 10.52 16 7 N -0.38 -17.07 12.21 -58.96 -0.72 -17.79 16 8 O 0.08 3.49 11.29 74.42 0.84 4.33 16 9 C 0.25 11.50 6.94 88.36 0.61 12.11 16 10 C 0.13 6.19 2.77 -12.29 -0.03 6.16 16 11 H 0.06 3.17 8.14 -2.39 -0.02 3.15 16 12 C -0.13 -5.80 8.95 71.98 0.64 -5.15 16 13 C -0.55 -28.68 8.55 25.60 0.22 -28.46 16 14 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 15 C 0.03 1.79 5.30 84.65 0.45 2.24 16 16 N -0.90 -47.26 11.32 21.45 0.24 -47.02 16 17 Si 0.96 41.09 29.54 68.60 2.03 43.12 16 18 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 19 H -0.28 -11.32 7.11 99.48 0.71 -10.62 16 20 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 21 N -0.51 -22.61 11.58 -302.43 -3.50 -26.12 16 22 N -0.46 -15.39 10.54 -177.73 -1.87 -17.26 16 23 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 24 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.11 0.88 8.11 -2.39 -0.02 0.86 16 26 H 0.23 1.81 8.06 -2.91 -0.02 1.79 16 27 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.09 4.21 6.07 -2.39 -0.01 4.20 16 29 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.27 13.46 8.31 -92.71 -0.77 12.69 16 Total: -1.00 -61.73 286.46 2.28 -59.45 By element: Atomic # 1 Polarization: -2.39 SS G_CDS: 1.17 Total: -1.22 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 5.42 Total: -1.16 kcal Atomic # 7 Polarization: -102.33 SS G_CDS: -5.85 Total: -108.18 kcal Atomic # 8 Polarization: 3.49 SS G_CDS: 0.84 Total: 4.33 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Atomic # 16 Polarization: 4.99 SS G_CDS: -1.32 Total: 3.66 kcal Total: -61.73 2.28 -59.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596582110.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.326 kcal (2) G-P(sol) polarization free energy of solvation -61.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds