Wall clock time and date at job start Mon Mar 30 2020 06:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46680 * 2 1 4 4 C 1.50707 * 109.46950 * 240.00635 * 2 1 3 5 5 H 1.07995 * 119.99346 * 239.99696 * 4 2 1 6 6 C 1.37871 * 120.00359 * 59.99668 * 4 2 1 7 7 N 1.31521 * 119.99841 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00282 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46944 * 359.97438 * 8 6 4 10 10 H 1.48491 * 109.47193 * 120.00022 * 8 6 4 11 11 H 1.48509 * 109.47104 * 240.00296 * 8 6 4 12 12 C 1.50698 * 109.47144 * 120.00559 * 2 1 3 13 13 N 1.31130 * 126.54646 * 239.99859 * 12 2 1 14 14 C 1.34492 * 105.61399 * 179.97438 * 13 12 2 15 15 C 1.50700 * 126.29104 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47086 * 269.98022 * 15 14 13 17 17 C 1.33641 * 126.04085 * 89.99742 * 16 15 14 18 18 N 1.31779 * 114.49910 * 180.02562 * 17 16 15 19 19 C 1.29032 * 117.12487 * 359.97438 * 18 17 16 20 20 S 1.70974 * 110.16811 * 359.72715 * 19 18 17 21 21 N 1.29954 * 107.42242 * 359.97438 * 14 13 12 22 22 O 1.21293 * 110.25286 * 0.02562 * 21 14 13 23 23 H 1.09000 * 109.47453 * 59.99793 * 1 2 3 24 24 H 1.09000 * 109.47028 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47204 * 299.99148 * 1 2 3 26 26 H 0.97000 * 119.99674 * 180.02562 * 7 6 4 27 27 H 1.09005 * 109.47013 * 29.97723 * 15 14 13 28 28 H 1.08996 * 109.47115 * 149.97626 * 15 14 13 29 29 H 1.07994 * 122.74743 * 359.97438 * 17 16 15 30 30 H 1.08003 * 124.91028 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5883 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8304 -2.6034 8 14 2.3212 -1.1201 -4.0081 9 1 3.1464 -2.2867 -3.6040 10 1 1.1660 -1.5863 -4.8161 11 1 3.1465 -0.1870 -4.8166 12 6 2.0323 -0.7105 1.2304 13 7 2.7893 -0.2008 2.1721 14 6 2.9810 -1.1933 3.0592 15 6 3.7873 -1.1107 4.3297 16 6 5.2164 -1.4938 4.0435 17 6 6.1958 -0.6610 3.6785 18 7 7.3630 -1.2414 3.4854 19 6 7.4229 -2.5174 3.6676 20 16 5.8930 -3.1180 4.1385 21 7 2.3423 -2.2364 2.6202 22 8 1.7908 -1.9801 1.5707 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 0.7088 1.1616 -3.4844 27 1 3.7547 -0.0915 4.7151 28 1 3.3696 -1.7927 5.0702 29 1 6.0429 0.4005 3.5515 30 1 8.3120 -3.1181 3.5453 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596597134.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:37 Heat of formation + Delta-G solvation = 103.144187 kcal Electronic energy + Delta-G solvation = -17102.335557 eV Core-core repulsion = 14220.795457 eV Total energy + Delta-G solvation = -2881.540101 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.82016 -39.66826 -35.67036 -35.02750 -32.92806 -31.52571 -29.70483 -27.66946 -25.41640 -24.76463 -23.49567 -22.45279 -20.50943 -19.70934 -18.23770 -17.34109 -16.78975 -16.05805 -15.65127 -15.05639 -14.76355 -14.04425 -13.86113 -13.63501 -13.43738 -12.93874 -12.75562 -11.91591 -11.73255 -11.28085 -11.24364 -11.06606 -10.83025 -10.66851 -10.45375 -10.33918 -10.11242 -9.75353 -9.52650 -9.36615 -9.03448 -8.91918 -8.60283 -6.24852 -4.34113 0.58404 1.25632 1.65957 1.92176 2.74711 2.92728 3.21127 3.29467 3.34809 3.77587 4.16208 4.27150 4.30028 4.56645 4.81163 5.07497 5.15230 5.23920 5.39203 5.70107 5.92029 6.09653 6.45468 6.53898 6.62158 6.79611 6.82935 7.34931 7.59286 7.61377 7.77231 7.97182 8.65259 8.89238 9.32461 10.81409 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.023904 B = 0.005164 C = 0.004663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.052611 B = 5420.840176 C = 6003.757806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.124 3.876 3 H 0.076 0.924 4 C -0.523 4.523 5 H 0.062 0.938 6 C 0.071 3.929 7 N -0.884 5.884 8 Si 0.903 3.097 9 H -0.272 1.272 10 H -0.280 1.280 11 H -0.281 1.281 12 C 0.247 3.753 13 N -0.511 5.511 14 C 0.155 3.845 15 C 0.058 3.942 16 C -0.215 4.215 17 C 0.049 3.951 18 N -0.470 5.470 19 C 0.014 3.986 20 S 0.129 5.871 21 N -0.404 5.404 22 O 0.072 5.928 23 H 0.101 0.899 24 H 0.039 0.961 25 H 0.017 0.983 26 H 0.266 0.734 27 H 0.114 0.886 28 H 0.099 0.901 29 H 0.180 0.820 30 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.288 -4.871 12.407 14.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.104 3.896 3 H 0.093 0.907 4 C -0.562 4.562 5 H 0.080 0.920 6 C -0.133 4.133 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.196 1.196 10 H -0.206 1.206 11 H -0.207 1.207 12 C 0.029 3.971 13 N -0.244 5.244 14 C -0.119 4.119 15 C 0.017 3.983 16 C -0.337 4.337 17 C -0.102 4.102 18 N -0.183 5.183 19 C -0.284 4.284 20 S 0.382 5.618 21 N -0.116 5.116 22 O 0.017 5.983 23 H 0.120 0.880 24 H 0.058 0.942 25 H 0.036 0.964 26 H 0.076 0.924 27 H 0.133 0.867 28 H 0.118 0.882 29 H 0.197 0.803 30 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 6.585 -5.916 12.982 15.713 hybrid contribution 0.245 0.451 -1.197 1.303 sum 6.829 -5.464 11.785 14.676 Atomic orbital electron populations 1.21856 0.95502 1.00677 1.01665 1.17852 0.93877 0.95296 0.82588 0.90655 1.20899 1.32892 1.13198 0.89186 0.91977 1.24868 0.94503 0.94826 0.99057 1.69861 1.35707 1.22344 1.24185 0.86342 0.78792 0.79685 0.82164 1.19598 1.20561 1.20673 1.30185 0.89452 0.80749 0.96750 1.71938 1.19205 1.29534 1.03750 1.25335 1.00337 0.86673 0.99575 1.18062 0.85448 1.04536 0.90238 1.25700 1.00689 0.95555 1.11743 1.21859 0.86279 1.02066 0.99974 1.66351 1.26279 1.08974 1.16727 1.28405 1.01962 0.94244 1.03751 1.84073 1.05003 1.10056 1.62690 1.74514 1.13822 1.23988 0.99229 1.85253 1.54200 1.30757 1.28130 0.88033 0.94168 0.96384 0.92356 0.86740 0.88225 0.80297 0.78476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.95 37.16 0.33 -2.77 16 2 C 0.12 3.00 2.77 -92.92 -0.26 2.74 16 3 H 0.08 1.92 8.14 -51.93 -0.42 1.50 16 4 C -0.52 -13.74 8.55 -34.44 -0.29 -14.03 16 5 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 7 N -0.88 -23.40 11.32 55.43 0.63 -22.77 16 8 Si 0.90 20.44 29.54 -169.99 -5.02 15.41 16 9 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 C 0.25 5.57 6.96 -13.06 -0.09 5.48 16 13 N -0.51 -10.83 11.55 -9.87 -0.11 -10.95 16 14 C 0.15 2.87 7.45 -156.37 -1.17 1.71 16 15 C 0.06 0.79 6.38 -29.04 -0.19 0.60 16 16 C -0.21 -2.94 5.83 -35.92 -0.21 -3.15 16 17 C 0.05 0.70 11.25 -19.19 -0.22 0.49 16 18 N -0.47 -6.76 10.54 -15.75 -0.17 -6.93 16 19 C 0.01 0.16 12.23 51.59 0.63 0.79 16 20 S 0.13 1.53 23.22 -107.50 -2.50 -0.97 16 21 N -0.40 -8.16 12.16 30.90 0.38 -7.78 16 22 O 0.07 1.59 11.31 18.11 0.20 1.80 16 23 H 0.10 2.45 6.07 -51.93 -0.32 2.13 16 24 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.27 6.68 8.31 -40.82 -0.34 6.35 16 27 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.18 2.34 8.06 -52.49 -0.42 1.92 16 30 H 0.20 1.56 8.06 -52.48 -0.42 1.13 16 LS Contribution 285.57 15.07 4.30 4.30 Total: -1.00 -28.90 285.57 -6.65 -35.55 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -2.82 Total: -1.27 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -1.55 Total: -6.40 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.72 Total: -48.43 kcal Atomic # 8 Polarization: 1.59 SS G_CDS: 0.20 Total: 1.80 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.50 Total: -0.97 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.90 -6.65 -35.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596597134.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.695 kcal (2) G-P(sol) polarization free energy of solvation -28.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds